Lsi03G004050 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G004050
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein of unknown function (DUF 3339)
Location	chr03: 4643450 .. 4643659 (+)
RNA-Seq Expression	Lsi03G004050
Synteny	Lsi03G004050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATTGGGGCCCTGTTCTAATAGCCGTAATACTGTTCGTAATTCTGAGCCCCGGAGTTCTGTTTCAGTTGCCCAGCAAAAACAGAGTTGTGGAGTTCCTCAATATGCAGACCAGCGCCATCTCCATCTTCGTCCACACCATCATCTACTTTGGCCTCATCACTGTCTTTCTCATCGCCATTGGCGTTCACATTTCCAGTGGCTAA

mRNA sequence

ATGGGGGATTGGGGCCCTGTTCTAATAGCCGTAATACTGTTCGTAATTCTGAGCCCCGGAGTTCTGTTTCAGTTGCCCAGCAAAAACAGAGTTGTGGAGTTCCTCAATATGCAGACCAGCGCCATCTCCATCTTCGTCCACACCATCATCTACTTTGGCCTCATCACTGTCTTTCTCATCGCCATTGGCGTTCACATTTCCAGTGGCTAA

Coding sequence (CDS)

ATGGGGGATTGGGGCCCTGTTCTAATAGCCGTAATACTGTTCGTAATTCTGAGCCCCGGAGTTCTGTTTCAGTTGCCCAGCAAAAACAGAGTTGTGGAGTTCCTCAATATGCAGACCAGCGCCATCTCCATCTTCGTCCACACCATCATCTACTTTGGCCTCATCACTGTCTTTCTCATCGCCATTGGCGTTCACATTTCCAGTGGCTAA

Protein sequence

MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLIAIGVHISSG

Homology

[Close]

BLAST of Lsi03G004050 vs. ExPASy TrEMBL
Match: A0A1S3B351 (uncharacterized protein LOC103485470 OS=Cucumis melo OX=3656 GN=LOC103485470 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-23
Identity = 58/69 (84.06%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          MGDWGPVLIAVILFV+LSPGVLFQLP  +RVV+F+NMQTSAIS+FVH+II+FGLIT+F+I
Sbjct: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60

Query: 61 AIGVHISSG 70
          AIGVHISSG
Sbjct: 61 AIGVHISSG 69

[Close]

BLAST of Lsi03G004050 vs. ExPASy TrEMBL
Match: A0A6J1BXW3 (uncharacterized protein LOC111006581 OS=Momordica charantia OX=3673 GN=LOC111006581 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.5e-22
Identity = 55/69 (79.71%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          M DWGPVLIAV+LFV+LSPGVLFQLP K RVVEF+N++TSAIS+FVHT+I+FGLIT+FLI
Sbjct: 1  MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVVEFVNLKTSAISVFVHTLIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI++G
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of Lsi03G004050 vs. ExPASy TrEMBL
Match: A0A2C9U7J2 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G102200 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-21
Identity = 53/69 (76.81%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          M DWGPV++AV+LFV+LSPGVLFQLP K RVVEF NMQTS  S+FVHTII+FGLIT+FLI
Sbjct: 1  MADWGPVVVAVVLFVVLSPGVLFQLPGKGRVVEFANMQTSGASVFVHTIIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIG+HI++G
Sbjct: 61 AIGIHITTG 69

[Close]

BLAST of Lsi03G004050 vs. ExPASy TrEMBL
Match: B9RBG4 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1676560 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.1e-21
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          M DWGPV+IAV+LFV+LSPGVLFQLP  +RVVEF N+QTS +S+FVHTII+FGLIT+FLI
Sbjct: 1  MADWGPVVIAVVLFVVLSPGVLFQLPGNSRVVEFANLQTSGVSVFVHTIIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI++G
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of Lsi03G004050 vs. ExPASy TrEMBL
Match: A0A0A0LMX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406080 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.1e-21
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          MGDW PVLIAVILFV+LSPGVLFQLP  +RVV+F+NMQTSAIS+FVH+I +FGLIT+F+I
Sbjct: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60

Query: 61 AIGVHISSG 70
          AI VHISSG
Sbjct: 61 AIDVHISSG 69

[Close]

BLAST of Lsi03G004050 vs. NCBI nr
Match: XP_038886424.1 (uncharacterized protein LOC120076617 [Benincasa hispida])

HSP 1 Score: 117.9 bits (294), Expect = 3.6e-23
Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          MGDWGPV+IAV+LFVILSPGVLFQLP  NRVV+FLNMQTSAIS+FVHTII+FGLIT+F+I
Sbjct: 1  MGDWGPVVIAVVLFVILSPGVLFQLPGNNRVVQFLNMQTSAISVFVHTIIFFGLITIFVI 60

Query: 61 AIGVHISSG 70
          AI VHISSG
Sbjct: 61 AIDVHISSG 69

[Close]

BLAST of Lsi03G004050 vs. NCBI nr
Match: XP_008441320.1 (PREDICTED: uncharacterized protein LOC103485470 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 6.1e-23
Identity = 58/69 (84.06%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          MGDWGPVLIAVILFV+LSPGVLFQLP  +RVV+F+NMQTSAIS+FVH+II+FGLIT+F+I
Sbjct: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60

Query: 61 AIGVHISSG 70
          AIGVHISSG
Sbjct: 61 AIGVHISSG 69

[Close]

BLAST of Lsi03G004050 vs. NCBI nr
Match: XP_022134280.1 (uncharacterized protein LOC111006581 [Momordica charantia])

HSP 1 Score: 114.0 bits (284), Expect = 5.1e-22
Identity = 55/69 (79.71%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          M DWGPVLIAV+LFV+LSPGVLFQLP K RVVEF+N++TSAIS+FVHT+I+FGLIT+FLI
Sbjct: 1  MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVVEFVNLKTSAISVFVHTLIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI++G
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of Lsi03G004050 vs. NCBI nr
Match: XP_037491426.1 (uncharacterized protein LOC105632430 [Jatropha curcas])

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 54/69 (78.26%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          M DWGPV+IAV+LFV+LSPGVLFQLP K+RVVEF+NMQTS +S+ VHTII+FGLIT+FLI
Sbjct: 1  MADWGPVVIAVVLFVVLSPGVLFQLPGKSRVVEFVNMQTSGVSVLVHTIIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI++G
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of Lsi03G004050 vs. NCBI nr
Match: CAA2955096.1 (transmembrane [Olea europaea subsp. europaea])

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 54/69 (78.26%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          M DWGPV+IAV+LFV+L+PG+LFQLP K+R +EF+NMQTS ISIFVHTI++FGLIT+FLI
Sbjct: 1  MADWGPVVIAVVLFVLLTPGLLFQLPGKSRAIEFVNMQTSGISIFVHTILFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHISSG
Sbjct: 61 AIGVHISSG 69

[Close]

BLAST of Lsi03G004050 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 100.1 bits (248), Expect = 7.2e-22
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          M DWGPVLIAVILFV+LSPG+LFQ+P+  RVVEF NMQTS  SI VH II+FGLIT+F I
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AIGVHISSG 70
          AI VHI SG
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of Lsi03G004050 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 97.4 bits (241), Expect = 4.6e-21
Identity = 48/69 (69.57%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          M DWGPV++AVILFV+L+PG+LFQ+P++ RVVEF NMQTS  SI VHTII+FGLIT+F I
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AIGVHISSG 70
          AI +HI +G
Sbjct: 61 AIRLHIYTG 69

[Close]

BLAST of Lsi03G004050 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 88.6 bits (218), Expect = 2.2e-18
Identity = 41/69 (59.42%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          M DWGPVL+ VILFV+L+PG+LFQLP + + VEF N QTSA+S+ VH+++YF L+ VFL+
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AIGVHISSG 70
          A+ +HI  G
Sbjct: 61 ALKIHIYIG 69

[Close]

BLAST of Lsi03G004050 vs. TAIR 10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-17
Identity = 41/64 (64.06%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 3  DWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLIAI 62
          DWGPV++AV LF++LSPG+LFQLP++ RV+EF NM TS ISI VH IIYF ++T+ +IAI
Sbjct: 4  DWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIAI 63

Query: 63 GVHI 67
           +HI
Sbjct: 64 QIHI 67

[Close]

BLAST of Lsi03G004050 vs. TAIR 10
Match: AT3G27027.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 83.2 bits (204), Expect = 9.1e-17
Identity = 40/64 (62.50%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 3  DWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLIAI 62
          DWGPV++AV LF++LSPG+LFQLP++ RVVEF NM TS I+I VH  IYF ++T+ +IAI
Sbjct: 4  DWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILVIAI 63

Query: 63 GVHI 67
           +HI
Sbjct: 64 QIHI 67

The following BLAST results are available for this feature:

BLAST of Lsi03G004050 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G004050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B351	2.9e-23	84.06	uncharacterized protein LOC103485470 OS=Cucumis melo OX=3656 GN=LOC103485470 PE=...	[more]
A0A6J1BXW3	2.5e-22	79.71	uncharacterized protein LOC111006581 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A2C9U7J2	1.6e-21	76.81	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G102200 PE=4 SV=...	[more]
B9RBG4	2.1e-21	76.81	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1676560 PE=4 SV=1	[more]
A0A0A0LMX4	2.1e-21	79.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406080 PE=4 SV=1	[more]

BLAST of Lsi03G004050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886424.1	3.6e-23	85.51	uncharacterized protein LOC120076617 [Benincasa hispida]	[more]
XP_008441320.1	6.1e-23	84.06	PREDICTED: uncharacterized protein LOC103485470 [Cucumis melo]	[more]
XP_022134280.1	5.1e-22	79.71	uncharacterized protein LOC111006581 [Momordica charantia]	[more]
XP_037491426.1	1.5e-21	78.26	uncharacterized protein LOC105632430 [Jatropha curcas]	[more]
CAA2955096.1	1.5e-21	78.26	transmembrane [Olea europaea subsp. europaea]	[more]

BLAST of Lsi03G004050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63500.1	7.2e-22	75.36	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	4.6e-21	69.57	Protein of unknown function (DUF 3339)	[more]
AT5G08391.1	2.2e-18	59.42	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	1.4e-17	64.06	Protein of unknown function (DUF 3339)	[more]
AT3G27027.1	9.1e-17	62.50	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..66 e-value: 1.0E-33 score: 115.3
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..69
None	No IPR available	PANTHER	PTHR33128:SF69	SUBFAMILY NOT NAMED	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G004050.1	Lsi03G004050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane