Lsi03G004040 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G004040
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein of unknown function (DUF 3339)
Location	chr03: 4634804 .. 4635013 (+)
RNA-Seq Expression	Lsi03G004040
Synteny	Lsi03G004040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGATTGGGCACCGGTGGTGATCGGAGTTGTACTGTTCGTACTGCTCTCTCCGGGGCTTCTGTTCCAGTTTCCGGGAAATAATCGGCAGTTTGAGTTCGGGAGCATGAAGACCAACGGCAAGGCTGTCGCTATACACACGCTCATCTTCTTCATCCTCTATGCCGTCTTCATTCTCGCTCTCCATATCCACATCTACACTGGCTGA

mRNA sequence

ATGTCGGATTGGGCACCGGTGGTGATCGGAGTTGTACTGTTCGTACTGCTCTCTCCGGGGCTTCTGTTCCAGTTTCCGGGAAATAATCGGCAGTTTGAGTTCGGGAGCATGAAGACCAACGGCAAGGCTGTCGCTATACACACGCTCATCTTCTTCATCCTCTATGCCGTCTTCATTCTCGCTCTCCATATCCACATCTACACTGGCTGA

Coding sequence (CDS)

ATGTCGGATTGGGCACCGGTGGTGATCGGAGTTGTACTGTTCGTACTGCTCTCTCCGGGGCTTCTGTTCCAGTTTCCGGGAAATAATCGGCAGTTTGAGTTCGGGAGCATGAAGACCAACGGCAAGGCTGTCGCTATACACACGCTCATCTTCTTCATCCTCTATGCCGTCTTCATTCTCGCTCTCCATATCCACATCTACACTGGCTGA

Protein sequence

MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFILALHIHIYTG

Homology

[Close]

BLAST of Lsi03G004040 vs. ExPASy TrEMBL
Match: A0A0A0LMK8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406095 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-29
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFF+LYAVFIL
Sbjct: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFVLYAVFIL 60

Query: 61 ALHIHIYTG 70
          ALHIHIYTG
Sbjct: 61 ALHIHIYTG 69

[Close]

BLAST of Lsi03G004040 vs. ExPASy TrEMBL
Match: A0A1S3B3X3 (uncharacterized protein LOC103485472 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485472 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-29
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFF+LYAVFIL
Sbjct: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFVLYAVFIL 60

Query: 61 ALHIHIYTG 70
          ALHIHIYTG
Sbjct: 61 ALHIHIYTG 69

[Close]

BLAST of Lsi03G004040 vs. ExPASy TrEMBL
Match: A0A1S3B371 (uncharacterized protein LOC103485472 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485472 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-29
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFF+LYAVFIL
Sbjct: 74  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFVLYAVFIL 133

Query: 61  ALHIHIYTG 70
           ALHIHIYTG
Sbjct: 134 ALHIHIYTG 142

[Close]

BLAST of Lsi03G004040 vs. ExPASy TrEMBL
Match: A0A6J1K207 (uncharacterized protein LOC111489412 OS=Cucurbita maxima OX=3661 GN=LOC111489412 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-28
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKA+AIHTLIFFILYAVFIL
Sbjct: 126 MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 185

Query: 61  ALHIHIYTG 70
           AL IHIYTG
Sbjct: 186 ALRIHIYTG 194

[Close]

BLAST of Lsi03G004040 vs. ExPASy TrEMBL
Match: A0A6J1FLS0 (uncharacterized protein LOC111445120 OS=Cucurbita moschata OX=3662 GN=LOC111445120 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-28
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKA+AIHTLIFFILYAVFIL
Sbjct: 123 MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 182

Query: 61  ALHIHIYTG 70
           AL IHIYTG
Sbjct: 183 ALRIHIYTG 191

[Close]

BLAST of Lsi03G004040 vs. NCBI nr
Match: XP_011649954.2 (uncharacterized protein LOC101211888 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 3.3e-29
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFF+LYAVFIL
Sbjct: 74  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFVLYAVFIL 133

Query: 61  ALHIHIYTG 70
           ALHIHIYTG
Sbjct: 134 ALHIHIYTG 142

[Close]

BLAST of Lsi03G004040 vs. NCBI nr
Match: XP_008441322.1 (PREDICTED: uncharacterized protein LOC103485472 isoform X1 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 3.3e-29
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFF+LYAVFIL
Sbjct: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFVLYAVFIL 60

Query: 61 ALHIHIYTG 70
          ALHIHIYTG
Sbjct: 61 ALHIHIYTG 69

[Close]

BLAST of Lsi03G004040 vs. NCBI nr
Match: XP_008441325.2 (PREDICTED: uncharacterized protein LOC103485472 isoform X2 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 3.3e-29
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFF+LYAVFIL
Sbjct: 74  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFVLYAVFIL 133

Query: 61  ALHIHIYTG 70
           ALHIHIYTG
Sbjct: 134 ALHIHIYTG 142

[Close]

BLAST of Lsi03G004040 vs. NCBI nr
Match: XP_038884726.1 (uncharacterized protein LOC120075418 [Benincasa hispida])

HSP 1 Score: 136.7 bits (343), Expect = 7.4e-29
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILY+VFIL
Sbjct: 77  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYSVFIL 136

Query: 61  ALHIHIYTG 70
           ALH+HIYTG
Sbjct: 137 ALHVHIYTG 145

[Close]

BLAST of Lsi03G004040 vs. NCBI nr
Match: XP_023551540.1 (uncharacterized protein LOC111809330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.8 bits (338), Expect = 2.8e-28
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKA+AIHTLIFFILYAVFIL
Sbjct: 155 MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 214

Query: 61  ALHIHIYTG 70
           AL IHIYTG
Sbjct: 215 ALRIHIYTG 223

[Close]

BLAST of Lsi03G004040 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.5 bits (275), Expect = 5.3e-25
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
           M+DWAPV++GVVLFV+LSPGLLF  PGNNR  +FG +KTNGKA+A+HTLIFF +Y + IL
Sbjct: 74  MADWAPVLVGVVLFVILSPGLLFSLPGNNRTVDFGGLKTNGKAIAVHTLIFFAIYTILIL 133

Query: 61  ALHIHIYTG 70
           AL++HIYTG
Sbjct: 134 ALNLHIYTG 142

[Close]

BLAST of Lsi03G004040 vs. TAIR 10
Match: AT5G40970.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 100.5 bits (249), Expect = 5.5e-22
Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          M+DWAPV++GVVLFV+LSPGLLF  PG++   +FG MKTNGKA+A+HTLIFF  Y + IL
Sbjct: 1  MADWAPVLVGVVLFVILSPGLLFSLPGHHHTLQFGGMKTNGKAIAVHTLIFFAAYTILIL 60

Query: 61 ALHIHIYTG 70
          A+++HI TG
Sbjct: 61 AVNLHITTG 69

[Close]

BLAST of Lsi03G004040 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 89.7 bits (221), Expect = 9.7e-19
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          M+DW PVV+ V+LFVLL+PGLLFQ P   R  EFG+M+T+G ++ +HT+IFF L  +F +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 ALHIHIYTG 70
          A+ +HIYTG
Sbjct: 61 AIRLHIYTG 69

[Close]

BLAST of Lsi03G004040 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-17
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          M+DW PV+I V+LFV+LSPGLLFQ P   R  EFG+M+T+G ++ +H +IFF L  +F +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 ALHIHIYTG 70
          A+++HIY+G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of Lsi03G004040 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 84.7 bits (208), Expect = 3.1e-17
Identity = 38/69 (55.07%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          MSDW PV++ V+LFV+L+PGLLFQ PG  +  EFG+ +T+  +V +H+L++F L  VF+L
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 ALHIHIYTG 70
          AL IHIY G
Sbjct: 61 ALKIHIYIG 69

The following BLAST results are available for this feature:

BLAST of Lsi03G004040 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G004040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMK8	1.6e-29	98.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406095 PE=4 SV=1	[more]
A0A1S3B3X3	1.6e-29	98.55	uncharacterized protein LOC103485472 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3B371	1.6e-29	98.55	uncharacterized protein LOC103485472 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1K207	1.4e-28	97.10	uncharacterized protein LOC111489412 OS=Cucurbita maxima OX=3661 GN=LOC111489412...	[more]
A0A6J1FLS0	1.4e-28	97.10	uncharacterized protein LOC111445120 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]

BLAST of Lsi03G004040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649954.2	3.3e-29	98.55	uncharacterized protein LOC101211888 [Cucumis sativus]	[more]
XP_008441322.1	3.3e-29	98.55	PREDICTED: uncharacterized protein LOC103485472 isoform X1 [Cucumis melo]	[more]
XP_008441325.2	3.3e-29	98.55	PREDICTED: uncharacterized protein LOC103485472 isoform X2 [Cucumis melo]	[more]
XP_038884726.1	7.4e-29	97.10	uncharacterized protein LOC120075418 [Benincasa hispida]	[more]
XP_023551540.1	2.8e-28	97.10	uncharacterized protein LOC111809330 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi03G004040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27030.1	5.3e-25	71.01	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G40970.1	5.5e-22	65.22	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	9.7e-19	56.52	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	1.1e-17	53.62	Protein of unknown function (DUF 3339)	[more]
AT5G08391.1	3.1e-17	55.07	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 e-value: 2.5E-33 score: 114.0
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..69
None	No IPR available	PANTHER	PTHR33128:SF6	TRANSMEMBRANE PROTEIN	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G004040.1	Lsi03G004040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane