Lsi03G003670 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G003670
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	E3 ubiquitin-protein ligase SDIR1
Location	chr03: 4314295 .. 4317810 (+)
RNA-Seq Expression	Lsi03G003670
Synteny	Lsi03G003670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACTTGAGTTTGAGTGCACTCATCTTACAGTCCTTTGGTTCCATTGGATGCGCAAATGATGGGAAAATGTCTGGTGTACTTCTGGATGTCTTTTCACTTGTCGGACAATGCAGTTCCTTTCCTTGAGGGTTTTCAGGATTAATATATTGTTGTCTGTGTTGTCTGAAGGAATCAGTTAATTTTAGTTATCTAATCTTTATGAAGCAGGTGATCAGATCACAAATTAGGTTTAGGCATTGAATTTGACAACTAAGGAATAATTAATTGGGAATTCTATGCTCTTCTTGTTGAATTGCACATGTACTGGATGTAGCGTATAGGAACATGTCAATACTTGCAAGAACTTCAAACTCGTTGAAATTATCTATGATTATATTTTTGTTATATGAGTGATTCATTGTTTAGCCATGGACATTACATCTGTGCATTTATATGGTTAAAGGAATGTCAAAGTTTAGGCTATTATGAGTCTTTGATTCTTTGAACTTCACTTCTTATGTTATTCATTCGTTGAACAATCCATCGGGGCTGAGAATGATTATGGGTTAGTGTAGTAAGGAGATACGGGAATTGTTTTATTTATACTGGAGCCTCTTTCTCTCTGAGTTATTTAGATTATTACCATAAGTTCATATGACTTTCATTCTGTAGATTCACATTACTCCGAAATCAACTAGCTGTTGCAACTATTGCAGACATGAGTTTTGTTTTCCGTGGAACGAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCCGAACGGCGTGCAATGGTATGCTCAATTTTTCGTACTCTTGACTTGATAATACTAATGCTTGGAAATTTGTAGATATTGCACTAGTTATGATCTAATTTAAAAAATATGTTTTTTTCTGCTCACAATCAGAGGGTTCATGCAGCACGTCCCGTTAACTCAAACTCACTTGCCTTTCTCGTCACAGGTACCATTTCACCTATGTGCAGGCTGATATCTGTTTCATGTGAGAATTTTGATCTACTGCATTGTTTTAATTCCTTGACTTTGTTGCAGTTCTTTTGTTATTCATGATATTAAATTCTCACCAGATGTCACCGAACTTTCTGGTGAGTTTCATGTTCCAAACTGTGAATGAGTAGTAGGTTGGTCTTACTCTCTCACCATTGGTGCGAATCTTTACATTTTCTTCCTTTGAACATGCATATTTAGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCTCAAGCCCAGGCTAGAGCTATGGCAGCCAGTGGCCTTCTTGGTCACACTGAATTGAGGTTACATATGCCTCCATCAGTAGCACTTGCAACTAGAGGGCGTTTACAAGGGTTAAGGCTTCAACTTGCTCTACTGGATCGGGAATTCGATGATCTAGGTATGGTTCAAATCTAAAAAGTGCAAGTTCGTAGCTTCAAACTTAGTCAAACGTGGCCACCATTCTTTTACATTATTCTAGTGTACCGCTTTCACCTACTTTCAGCAACATTTTTCAGTGGCACAAACTCTCTCATGTGTGTGTGCGTACGTGTGGGGGGAATTTGAGACTGAAATATCCACTTTGTGGCAAAATTTGGGGAAACTTTATCAATCGGATTTCTTTGACAATATTCTGAAGTGTAATCATTTTGATGTGGGTTTCTGAAAATGCAAGAAATTCACTCCTTTCATTGCCAAATTTGGGAAATTTTTTGTTGATCAGACTTCTTTGGCAAGGTTCTGACAGGATGATAAGCTTGCGGTAAGTGCATGAAGTCAAATAGGATAGAAGTGGTGCATTTCATGTTGTCAATTGTTGAAAAGAAGTACCCTGAACTTGCTTCTGACAGTATGGTTGGGATGGACAGTACCTCATGAAACTTTAAATTTGTTGGGTTTCTTTTTCTTATTTTAAACTTTTTTTTAAAGCTCATCATCATTGTCTTTTAAGTTTCATATGTATAATCAATGATGCGGTAATAAACATGTCGTTTATCTTCAGATTATGAAACTTTGAGAGCTTTGGATTCTGATAATGCTCCGACGACACCTTCTATGAGTGAGGAACAAATAAATGCTCTTCCCGTTCATAAGTACAAGGTTTCTGGTCCTCAAAGGTAATCAACCCCATATTAGTCTACATTCCAGAATGAATTAGGGTATCTGTTGCTTTACTTTGAGTTTTGATTGGAAGCCACATATTCTGCACTGAGATTTTTCAACGATGAAATATGCGTACTCCAGCTTGTCACACAAAAACTAAAATTAAGTTTTCATTAAATTATCTACAGTGACCCCTCTGTGAATCAGCAGGCTTCATCTTCAGAATCTAATGAGGTATCGATTAGGTTACCTTTTCCTTCCTTGTTTGATTCTTTTATTGCCTTAAACGGTGTGTACAAAATTACAAATACAATAATGACTCGTTTCAGAAGGAAATATAGTGCAGAGAAGGGACAGAAGGCCAAAATTTTCCTTTTTTTAGCTTATTATTTGTGTACCACACACTCTTTCTCATCATTTATCAATTTTCAAGAACGTACTGTTTTTTTTTAATTTTGATTGCAGAAGAGACAAGATTCAGTTAATGCAGTTGGCGGTACCAAGACCTCTGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTGCACCAGGTTAATCTCTTATCTCTTTGCGGCCTTTCCTTCCAAACAAATGGTTACTAAATATTTCATATTGAAAATTCAGAAATTTGGTTTTTTGTTATTATTATTACTTGTTGTGGTCGTTTTGTTTTGTTTGTCTTCTTCGAAGGCCTCTTGCACAGCCCCTCTTTCCTAAATTTTGATACACCTTCTAACTGCTGGCATTTCAACGGTTCTTTTAAATTGAATGTGGTTATACATGAATTCAATCTTGTAGTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGAACGTGCCCTGTTTGTAAATTCCGAGCGGTGTCCGGGTGGTCGGAACAGGGGCAAGGGGAAACCGATGCTTATATGGTTTAATTGGATGCAAAGCAAGTTATTGAACAACGCTTGCTTGACGCCTGATTAAAGGGCAGAGGATATGGACAGACGTGGTGTAATTAGGTTAAGGGTAGGCATTACAGGAATTGCAGTTGCCGTTCTGTATCTTTGAACTTCTGACGAGCCATTTAATTGTATTCTTGAAGTTCATCATTTGTGATATATAGTCTCTGACCATTGTGAGTGAGCAGAATTTTGGTTCTTTCACTGTCTTCAATGTATTATTCCAACCCTTACTAGCAAGTACTTGTTACCTCTAGAAATAAACACCACAATGAACATTTTCCACAATTCTCCATTGGCTTATTTGTAGTGTAGTATTGTAATAAGAAGACGGGAAAAAGGGTAATTTTATTCTAAGCTATCAGTGAAATTAAAAGTAAAATGCCAACTTAATATCCAGCAT

mRNA sequence

ATGCACTTGAGTTTGAGTGCACTCATCTTACAGTCCTTTGGTTCCATTGGATGCGCAAATGATGGGAAAATATTCACATTACTCCGAAATCAACTAGCTGTTGCAACTATTGCAGACATGAGTTTTGTTTTCCGTGGAACGAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCCGAACGGCGTGCAATGAGGGTTCATGCAGCACGTCCCGTTAACTCAAACTCACTTGCCTTTCTCGTCACAGTTCTTTTGTTATTCATGATATTAAATTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCTCAAGCCCAGGCTAGAGCTATGGCAGCCAGTGGCCTTCTTGGTCACACTGAATTGAGGTTACATATGCCTCCATCAGTAGCACTTGCAACTAGAGGGCGTTTACAAGGGTTAAGGCTTCAACTTGCTCTACTGGATCGGGAATTCGATGATCTAGATTATGAAACTTTGAGAGCTTTGGATTCTGATAATGCTCCGACGACACCTTCTATGAGTGAGGAACAAATAAATGCTCTTCCCGTTCATAAGTACAAGGTTTCTGGTCCTCAAAGTGACCCCTCTGTGAATCAGCAGGCTTCATCTTCAGAATCTAATGAGAAGAGACAAGATTCAGTTAATGCAGTTGGCGGTACCAAGACCTCTGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTGCACCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGAACGTGCCCTGTTTGTAAATTCCGAGCGGTGTCCGGGTGGTCGGAACAGGGGCAAGGGGAAACCGATGCTTATATGGTTTAATTGGATGCAAAGCAAGTTATTGAACAACGCTTGCTTGACGCCTGATTAAAGGGCAGAGGATATGGACAGACGTGGTGTAATTAGGTTAAGGGTAGGCATTACAGGAATTGCAGTTGCCGTTCTGTATCTTTGAACTTCTGACGAGCCATTTAATTGTATTCTTGAAGTTCATCATTTGTGATATATAGTCTCTGACCATTGTGAGTGAGCAGAATTTTGGTTCTTTCACTGTCTTCAATGTATTATTCCAACCCTTACTAGCAAGTACTTGTTACCTCTAGAAATAAACACCACAATGAACATTTTCCACAATTCTCCATTGGCTTATTTGTAGTGTAGTATTGTAATAAGAAGACGGGAAAAAGGGTAATTTTATTCTAAGCTATCAGTGAAATTAAAAGTAAAATGCCAACTTAATATCCAGCAT

Coding sequence (CDS)

ATGCACTTGAGTTTGAGTGCACTCATCTTACAGTCCTTTGGTTCCATTGGATGCGCAAATGATGGGAAAATATTCACATTACTCCGAAATCAACTAGCTGTTGCAACTATTGCAGACATGAGTTTTGTTTTCCGTGGAACGAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCCGAACGGCGTGCAATGAGGGTTCATGCAGCACGTCCCGTTAACTCAAACTCACTTGCCTTTCTCGTCACAGTTCTTTTGTTATTCATGATATTAAATTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCTCAAGCCCAGGCTAGAGCTATGGCAGCCAGTGGCCTTCTTGGTCACACTGAATTGAGGTTACATATGCCTCCATCAGTAGCACTTGCAACTAGAGGGCGTTTACAAGGGTTAAGGCTTCAACTTGCTCTACTGGATCGGGAATTCGATGATCTAGATTATGAAACTTTGAGAGCTTTGGATTCTGATAATGCTCCGACGACACCTTCTATGAGTGAGGAACAAATAAATGCTCTTCCCGTTCATAAGTACAAGGTTTCTGGTCCTCAAAGTGACCCCTCTGTGAATCAGCAGGCTTCATCTTCAGAATCTAATGAGAAGAGACAAGATTCAGTTAATGCAGTTGGCGGTACCAAGACCTCTGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTGCACCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGAACGTGCCCTGTTTGTAAATTCCGAGCGGTGTCCGGGTGGTCGGAACAGGGGCAAGGGGAAACCGATGCTTATATGGTTTAA

Protein sequence

MHLSLSALILQSFGSIGCANDGKIFTLLRNQLAVATIADMSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSVALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV

Homology

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BLAST of Lsi03G003670 vs. ExPASy Swiss-Prot
Match: Q9M2S6 (E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana OX=3702 GN=SDIR1 PE=1 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 2.7e-113
Identity = 218/273 (79.85%), Postives = 237/273 (86.81%), Query Frame = 0


Query: 40  MSFVFRGTRVPDIENGLS-GFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMS 99
           MSFVFRG+R  D+E+G S GF+PERRAMRVH ARPVNSNSLAFLVTVLLLFMILNSHQM 
Sbjct: 1   MSFVFRGSR-GDLESGFSGGFLPERRAMRVHGARPVNSNSLAFLVTVLLLFMILNSHQMP 60

Query: 100 PNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSVALATR 159
           PNFLLWLVLGVFLMATTLRMYATCQQLQA AQA+A AASGL  HTELRLH+PPS+ALATR
Sbjct: 61  PNFLLWLVLGVFLMATTLRMYATCQQLQAHAQAQAAAASGLFSHTELRLHVPPSIALATR 120

Query: 160 GRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSD 219
           GRLQGLRLQLALLDREFDDLDYETLRALDSDN  TT SMSEE+INALPVHKYKV  P++ 
Sbjct: 121 GRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTT-SMSEEEINALPVHKYKVLDPENG 180

Query: 220 PSVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHAN 279
            S+ +QAS+S S EK  DS N     K +EDELTCSVCLEQV VGE++R+LPCLHQFHA 
Sbjct: 181 CSLAKQASTSSSAEKMLDSANE--SKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAG 240

Query: 280 CIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDA 312
           CIDPWLRQQGTCPVCKFRA SGW EQ + + DA
Sbjct: 241 CIDPWLRQQGTCPVCKFRAHSGWQEQDEIDDDA 269

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BLAST of Lsi03G003670 vs. ExPASy Swiss-Prot
Match: Q68DV7 (E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens OX=9606 GN=RNF43 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-11
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 253 CSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWS-EQGQGETDA 312
           C++CLE+ + G+ +R + CLH+FH NC+DPWL Q  TCP+C F    G S  Q  G + +
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNITEGDSFSQSLGPSRS 331

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BLAST of Lsi03G003670 vs. ExPASy Swiss-Prot
Match: Q10R93 (Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.6e-11
Identity = 35/70 (50.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 244 TKTSEDELT---CSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGT-CPVCKFRAVS 303
           TK  ED  T   C++CLE  NVGE +R LPC H+FHA C+D WL    T CPVCK  A +
Sbjct: 224 TKVQEDNCTSSMCAICLEDYNVGEKLRVLPCRHKFHAACVDLWLTTWRTFCPVCKRDAST 283

Query: 304 GWSEQGQGET 310
           G  +    ET
Sbjct: 284 GIPDPPASET 293

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BLAST of Lsi03G003670 vs. ExPASy Swiss-Prot
Match: Q5NCP0 (E3 ubiquitin-protein ligase RNF43 OS=Mus musculus OX=10090 GN=Rnf43 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.6e-11
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 253 CSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSG 301
           C++CLE+ + G+ +R + CLH+FH  C+DPWL Q  TCP+C F  V G
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRTCVDPWLYQHRTCPLCMFNIVEG 319

[Close]

BLAST of Lsi03G003670 vs. ExPASy Swiss-Prot
Match: Q8NC42 (E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens OX=9606 GN=RNF149 PE=2 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-10
Identity = 29/60 (48.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 249 DELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCK---FRAVSGWSEQG 306
           D   C+VC+E   V ++IR LPC H FH  CIDPWL    TCP+CK    +A+  W E G
Sbjct: 265 DAENCAVCIENFKVKDIIRILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALGYWGEPG 324

[Close]

BLAST of Lsi03G003670 vs. ExPASy TrEMBL
Match: E5GC70 (Protein binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 533.5 bits (1373), Expect = 6.0e-148
Identity = 272/275 (98.91%), Postives = 273/275 (99.27%), Query Frame = 0


Query: 40  MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 99
           MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60

Query: 100 NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSVALATRG 159
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPS+ALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 160 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP 219
           RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSD 
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDS 180

Query: 220 SVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 279
           SVNQQASSSESNEKRQDSVNAVG TKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC
Sbjct: 181 SVNQQASSSESNEKRQDSVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 240

Query: 280 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 315
           IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV
Sbjct: 241 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 275

[Close]

BLAST of Lsi03G003670 vs. ExPASy TrEMBL
Match: A0A1S3B3A3 (E3 ubiquitin-protein ligase SDIR1 OS=Cucumis melo OX=3656 GN=LOC103485511 PE=4 SV=1)

HSP 1 Score: 533.5 bits (1373), Expect = 6.0e-148
Identity = 272/275 (98.91%), Postives = 273/275 (99.27%), Query Frame = 0


Query: 40  MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 99
           MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60

Query: 100 NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSVALATRG 159
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPS+ALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 160 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP 219
           RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSD 
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDS 180

Query: 220 SVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 279
           SVNQQASSSESNEKRQDSVNAVG TKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC
Sbjct: 181 SVNQQASSSESNEKRQDSVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 240

Query: 280 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 315
           IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV
Sbjct: 241 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 275

[Close]

BLAST of Lsi03G003670 vs. ExPASy TrEMBL
Match: A0A6J1FER7 (E3 ubiquitin-protein ligase SDIR1 OS=Cucurbita moschata OX=3662 GN=LOC111444825 PE=4 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 1.1e-146
Identity = 268/275 (97.45%), Postives = 271/275 (98.55%), Query Frame = 0


Query: 40  MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 99
           MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFM+LNSHQMSP
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMMLNSHQMSP 60

Query: 100 NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSVALATRG 159
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPS+ALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 160 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP 219
           RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP 180

Query: 220 SVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 279
           SVNQQASSSESNEKRQDS NAVG TK SEDELTCSVCLEQVNVGEL+RSLPCLHQFHANC
Sbjct: 181 SVNQQASSSESNEKRQDSANAVGSTKASEDELTCSVCLEQVNVGELVRSLPCLHQFHANC 240

Query: 280 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 315
           IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAY V
Sbjct: 241 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYSV 275

[Close]

BLAST of Lsi03G003670 vs. ExPASy TrEMBL
Match: A0A0A0KBF9 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G008630 PE=4 SV=1)

HSP 1 Score: 526.9 bits (1356), Expect = 5.6e-146
Identity = 270/275 (98.18%), Postives = 271/275 (98.55%), Query Frame = 0


Query: 40  MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 99
           MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP
Sbjct: 126 MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 185

Query: 100 NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSVALATRG 159
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPS+ALATRG
Sbjct: 186 NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 245

Query: 160 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP 219
           RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSD 
Sbjct: 246 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDS 305

Query: 220 SVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 279
           SVNQQASSSES EKRQDSVNAVG TKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC
Sbjct: 306 SVNQQASSSESIEKRQDSVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 365

Query: 280 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 315
           IDPWLRQQGTCPVCKFRAVSGWSEQ QGETDAYMV
Sbjct: 366 IDPWLRQQGTCPVCKFRAVSGWSEQEQGETDAYMV 400

[Close]

BLAST of Lsi03G003670 vs. ExPASy TrEMBL
Match: A0A6J1JZS1 (E3 ubiquitin-protein ligase SDIR1-like OS=Cucurbita maxima OX=3661 GN=LOC111488912 PE=4 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 9.6e-146
Identity = 266/275 (96.73%), Postives = 270/275 (98.18%), Query Frame = 0


Query: 40  MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 99
           MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSL FLVTVLLLFM+LNSHQMSP
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLVFLVTVLLLFMMLNSHQMSP 60

Query: 100 NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSVALATRG 159
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPS+ALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 160 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP 219
           RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP 180

Query: 220 SVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 279
           SVNQQASSSESNEKRQDS NAVG TK SEDELTCSVCLEQVNVGEL+RSLPCLHQFHANC
Sbjct: 181 SVNQQASSSESNEKRQDSANAVGSTKASEDELTCSVCLEQVNVGELVRSLPCLHQFHANC 240

Query: 280 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 315
           IDPWL+QQGTCPVCKFRAVSGWSEQGQGETDAY V
Sbjct: 241 IDPWLQQQGTCPVCKFRAVSGWSEQGQGETDAYSV 275

[Close]

BLAST of Lsi03G003670 vs. NCBI nr
Match: XP_008441380.1 (PREDICTED: E3 ubiquitin-protein ligase SDIR1 [Cucumis melo] >ADN34069.1 protein binding protein [Cucumis melo subsp. melo])

HSP 1 Score: 533.5 bits (1373), Expect = 1.2e-147
Identity = 272/275 (98.91%), Postives = 273/275 (99.27%), Query Frame = 0


Query: 40  MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 99
           MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60

Query: 100 NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSVALATRG 159
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPS+ALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 160 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP 219
           RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSD 
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDS 180

Query: 220 SVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 279
           SVNQQASSSESNEKRQDSVNAVG TKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC
Sbjct: 181 SVNQQASSSESNEKRQDSVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 240

Query: 280 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 315
           IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV
Sbjct: 241 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 275

[Close]

BLAST of Lsi03G003670 vs. NCBI nr
Match: XP_038885371.1 (E3 ubiquitin-protein ligase SDIR1 isoform X1 [Benincasa hispida] >XP_038885372.1 E3 ubiquitin-protein ligase SDIR1 isoform X1 [Benincasa hispida] >XP_038885373.1 E3 ubiquitin-protein ligase SDIR1 isoform X1 [Benincasa hispida] >XP_038885374.1 E3 ubiquitin-protein ligase SDIR1 isoform X1 [Benincasa hispida])

HSP 1 Score: 532.3 bits (1370), Expect = 2.8e-147
Identity = 271/275 (98.55%), Postives = 272/275 (98.91%), Query Frame = 0


Query: 40  MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 99
           MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60

Query: 100 NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSVALATRG 159
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPS+ALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 160 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP 219
           RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKV GPQSDP
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVPGPQSDP 180

Query: 220 SVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 279
           SVNQQASSSESNEKRQD VNAVG TKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC
Sbjct: 181 SVNQQASSSESNEKRQDLVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 240

Query: 280 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 315
           IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV
Sbjct: 241 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 275

[Close]

BLAST of Lsi03G003670 vs. NCBI nr
Match: XP_023551037.1 (E3 ubiquitin-protein ligase SDIR1 [Cucurbita pepo subsp. pepo] >XP_023551039.1 E3 ubiquitin-protein ligase SDIR1 [Cucurbita pepo subsp. pepo] >XP_023551040.1 E3 ubiquitin-protein ligase SDIR1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 531.2 bits (1367), Expect = 6.1e-147
Identity = 269/275 (97.82%), Postives = 272/275 (98.91%), Query Frame = 0


Query: 40  MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 99
           MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFM+LNSHQMSP
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMMLNSHQMSP 60

Query: 100 NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSVALATRG 159
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPS+ALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 160 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP 219
           RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP 180

Query: 220 SVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 279
           SVNQQASSSESNEKRQDS NAVG TKTSEDELTCSVCLEQVNVGEL+RSLPCLHQFHANC
Sbjct: 181 SVNQQASSSESNEKRQDSANAVGSTKTSEDELTCSVCLEQVNVGELVRSLPCLHQFHANC 240

Query: 280 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 315
           IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAY V
Sbjct: 241 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYSV 275

[Close]

BLAST of Lsi03G003670 vs. NCBI nr
Match: XP_022938667.1 (E3 ubiquitin-protein ligase SDIR1 [Cucurbita moschata] >XP_022938669.1 E3 ubiquitin-protein ligase SDIR1 [Cucurbita moschata] >XP_022938670.1 E3 ubiquitin-protein ligase SDIR1 [Cucurbita moschata] >KAG6578411.1 E3 ubiquitin-protein ligase SDIR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 529.3 bits (1362), Expect = 2.3e-146
Identity = 268/275 (97.45%), Postives = 271/275 (98.55%), Query Frame = 0


Query: 40  MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 99
           MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFM+LNSHQMSP
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMMLNSHQMSP 60

Query: 100 NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSVALATRG 159
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPS+ALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 160 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP 219
           RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP 180

Query: 220 SVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 279
           SVNQQASSSESNEKRQDS NAVG TK SEDELTCSVCLEQVNVGEL+RSLPCLHQFHANC
Sbjct: 181 SVNQQASSSESNEKRQDSANAVGSTKASEDELTCSVCLEQVNVGELVRSLPCLHQFHANC 240

Query: 280 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 315
           IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAY V
Sbjct: 241 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYSV 275

[Close]

BLAST of Lsi03G003670 vs. NCBI nr
Match: KAG7015976.1 (E3 ubiquitin-protein ligase SDIR1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 527.7 bits (1358), Expect = 6.8e-146
Identity = 267/273 (97.80%), Postives = 270/273 (98.90%), Query Frame = 0


Query: 40  MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 99
           MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFM+LNSHQMSP
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMMLNSHQMSP 60

Query: 100 NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSVALATRG 159
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPS+ALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 160 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP 219
           RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP 180

Query: 220 SVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 279
           SVNQQASSSESNEKRQDS NAVG TK SEDELTCSVCLEQVNVGEL+RSLPCLHQFHANC
Sbjct: 181 SVNQQASSSESNEKRQDSANAVGSTKASEDELTCSVCLEQVNVGELVRSLPCLHQFHANC 240

Query: 280 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAY 313
           IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAY
Sbjct: 241 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAY 273

[Close]

BLAST of Lsi03G003670 vs. TAIR 10
Match: AT3G55530.1 (RING/U-box superfamily protein )

HSP 1 Score: 409.8 bits (1052), Expect = 1.9e-114
Identity = 218/273 (79.85%), Postives = 237/273 (86.81%), Query Frame = 0


Query: 40  MSFVFRGTRVPDIENGLS-GFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMS 99
           MSFVFRG+R  D+E+G S GF+PERRAMRVH ARPVNSNSLAFLVTVLLLFMILNSHQM 
Sbjct: 1   MSFVFRGSR-GDLESGFSGGFLPERRAMRVHGARPVNSNSLAFLVTVLLLFMILNSHQMP 60

Query: 100 PNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSVALATR 159
           PNFLLWLVLGVFLMATTLRMYATCQQLQA AQA+A AASGL  HTELRLH+PPS+ALATR
Sbjct: 61  PNFLLWLVLGVFLMATTLRMYATCQQLQAHAQAQAAAASGLFSHTELRLHVPPSIALATR 120

Query: 160 GRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSD 219
           GRLQGLRLQLALLDREFDDLDYETLRALDSDN  TT SMSEE+INALPVHKYKV  P++ 
Sbjct: 121 GRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTT-SMSEEEINALPVHKYKVLDPENG 180

Query: 220 PSVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHAN 279
            S+ +QAS+S S EK  DS N     K +EDELTCSVCLEQV VGE++R+LPCLHQFHA 
Sbjct: 181 CSLAKQASTSSSAEKMLDSANE--SKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAG 240

Query: 280 CIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDA 312
           CIDPWLRQQGTCPVCKFRA SGW EQ + + DA
Sbjct: 241 CIDPWLRQQGTCPVCKFRAHSGWQEQDEIDDDA 269

[Close]

BLAST of Lsi03G003670 vs. TAIR 10
Match: AT1G04790.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 7.3e-13
Identity = 43/124 (34.68%), Postives = 60/124 (48.39%), Query Frame = 0


Query: 171 LDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSES 230
           +DR+F + DYE L ALD +N                 H++   G  S   +N    S+  
Sbjct: 542 MDRDFTEDDYELLLALDENN-----------------HRH---GGASANRINNLPESTVQ 601

Query: 231 NEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTC 290
            +  Q+               TC +CLE   +G+ IR LPCLH+FH +CIDPWL +  +C
Sbjct: 602 TDNFQE---------------TCVICLETPKIGDTIRHLPCLHKFHKDCIDPWLGRSKSC 630

Query: 291 PVCK 295
           PVCK
Sbjct: 662 PVCK 630

[Close]

BLAST of Lsi03G003670 vs. TAIR 10
Match: AT5G66070.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-11
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 236 DSVNAVGG---TKTSEDELTCSVCLEQVNVGELIRSLP-CLHQFHANCIDPWLRQQGTCP 295
           DS+N +     T TS + ++CSVCL+   VGE +RSLP C H FH  CID WLR+  +CP
Sbjct: 156 DSLNRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCP 215

[Close]

BLAST of Lsi03G003670 vs. TAIR 10
Match: AT5G66070.2 (RING/U-box superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-11
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 236 DSVNAVGG---TKTSEDELTCSVCLEQVNVGELIRSLP-CLHQFHANCIDPWLRQQGTCP 295
           DS+N +     T TS + ++CSVCL+   VGE +RSLP C H FH  CID WLR+  +CP
Sbjct: 180 DSLNRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCP 239

[Close]

BLAST of Lsi03G003670 vs. TAIR 10
Match: AT1G80400.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 3.1e-11
Identity = 35/109 (32.11%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 189 DNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSESNEKRQDSVNAVGGTK--- 248
           +N   T   + E INALPV+++K          ++  +  E +E+ +     +G  K   
Sbjct: 298 ENFSQTRGATAEAINALPVYRFK----------SKSRNDLEFSEEGEGGFLLLGSQKKRL 357

Query: 249 TSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCK 295
            S ++ +C +CL +    E +R LPC H FH +C+D WL+   TCP+CK
Sbjct: 358 ISGEDASCCICLTRYGDDEQVRELPCSHVFHVDCVDKWLKINATCPLCK 396

The following BLAST results are available for this feature:

BLAST of Lsi03G003670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2S6	2.7e-113	79.85	E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana OX=3702 GN=SDIR1 PE=1 ...	[more]
Q68DV7	1.0e-11	45.90	E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens OX=9606 GN=RNF43 PE=1 SV=1	[more]
Q10R93	6.6e-11	50.00	Receptor homology region, transmembrane domain- and RING domain-containing prote...	[more]
Q5NCP0	6.6e-11	50.00	E3 ubiquitin-protein ligase RNF43 OS=Mus musculus OX=10090 GN=Rnf43 PE=1 SV=1	[more]
Q8NC42	1.9e-10	48.33	E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens OX=9606 GN=RNF149 PE=2 SV=2	[more]

BLAST of Lsi03G003670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GC70	6.0e-148	98.91	Protein binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3B3A3	6.0e-148	98.91	E3 ubiquitin-protein ligase SDIR1 OS=Cucumis melo OX=3656 GN=LOC103485511 PE=4 S...	[more]
A0A6J1FER7	1.1e-146	97.45	E3 ubiquitin-protein ligase SDIR1 OS=Cucurbita moschata OX=3662 GN=LOC111444825 ...	[more]
A0A0A0KBF9	5.6e-146	98.18	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G008630 P...	[more]
A0A6J1JZS1	9.6e-146	96.73	E3 ubiquitin-protein ligase SDIR1-like OS=Cucurbita maxima OX=3661 GN=LOC1114889...	[more]

BLAST of Lsi03G003670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441380.1	1.2e-147	98.91	PREDICTED: E3 ubiquitin-protein ligase SDIR1 [Cucumis melo] >ADN34069.1 protein ...	[more]
XP_038885371.1	2.8e-147	98.55	E3 ubiquitin-protein ligase SDIR1 isoform X1 [Benincasa hispida] >XP_038885372.1...	[more]
XP_023551037.1	6.1e-147	97.82	E3 ubiquitin-protein ligase SDIR1 [Cucurbita pepo subsp. pepo] >XP_023551039.1 E...	[more]
XP_022938667.1	2.3e-146	97.45	E3 ubiquitin-protein ligase SDIR1 [Cucurbita moschata] >XP_022938669.1 E3 ubiqui...	[more]
KAG7015976.1	6.8e-146	97.80	E3 ubiquitin-protein ligase SDIR1, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lsi03G003670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55530.1	1.9e-114	79.85	RING/U-box superfamily protein	[more]
AT1G04790.1	7.3e-13	34.68	RING/U-box superfamily protein	[more]
AT5G66070.1	2.3e-11	49.21	RING/U-box superfamily protein	[more]
AT5G66070.2	2.3e-11	49.21	RING/U-box superfamily protein	[more]
AT1G80400.1	3.1e-11	32.11	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 253..293 e-value: 1.7E-8 score: 44.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 252..294 e-value: 3.7E-12 score: 46.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 253..294 score: 12.282736
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 214..298 e-value: 1.0E-19 score: 72.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 215..244
None	No IPR available	PANTHER	PTHR45977:SF4	E3 UBIQUITIN-PROTEIN LIGASE SDIR1	coord: 40..313
None	No IPR available	PANTHER	PTHR45977	TARGET OF ERK KINASE MPK-1	coord: 40..313
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 252..294 e-value: 3.28801E-24 score: 90.8241
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 247..300

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G003670.1	Lsi03G003670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009789	positive regulation of abscisic acid-activated signaling pathway
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0061630	ubiquitin protein ligase activity