Lsi03G003400 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G003400
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	17.8 kDa class I heat shock protein-like
Location	chr03: 4036394 .. 4036870 (-)
RNA-Seq Expression	Lsi03G003400
Synteny	Lsi03G003400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTGATTCCTAGTTTTTTGAGCGGCCGGCGTAGCAGCGTGTTCGATCCATTTTCTCTGGATATATGGGATCCATTAGAGGGGATGCAAATTCCAGGGACTCTGGCGAACGTTCCATCCTCGGGGGAAACAACGGCAATTGCAAACACTCGAATAGATTGGAGAGAGACGCCGGAGGCTCACATATTCAAGGCGGATCTGCCGGGGTTGAAGAAGGAGGAAGTGAAAGTGGAGGTTGAGGAAGGGAGAGTTCTGCAGATAAGTGGGGAGAGGAGCAAAGAAGAGGAGGAGAGGAATGAGAAATGGCACAGAGTGGAGCGGAGCATGGGGAAGTTCATGCGGCGGTTCCGGCTGCCGGAGAATGCAAAGATGGATGAGATTAAGGCGAATATGGAGAATGGAGTGCTGACTGTGATGGTACCTAAACAGGAGGAGAGGAGGCCACAAGTTAAGGCCATCGATATTGCGGGATAG

mRNA sequence

ATGTCGTTGATTCCTAGTTTTTTGAGCGGCCGGCGTAGCAGCGTGTTCGATCCATTTTCTCTGGATATATGGGATCCATTAGAGGGGATGCAAATTCCAGGGACTCTGGCGAACGTTCCATCCTCGGGGGAAACAACGGCAATTGCAAACACTCGAATAGATTGGAGAGAGACGCCGGAGGCTCACATATTCAAGGCGGATCTGCCGGGGTTGAAGAAGGAGGAAGTGAAAGTGGAGGTTGAGGAAGGGAGAGTTCTGCAGATAAGTGGGGAGAGGAGCAAAGAAGAGGAGGAGAGGAATGAGAAATGGCACAGAGTGGAGCGGAGCATGGGGAAGTTCATGCGGCGGTTCCGGCTGCCGGAGAATGCAAAGATGGATGAGATTAAGGCGAATATGGAGAATGGAGTGCTGACTGTGATGGTACCTAAACAGGAGGAGAGGAGGCCACAAGTTAAGGCCATCGATATTGCGGGATAG

Coding sequence (CDS)

ATGTCGTTGATTCCTAGTTTTTTGAGCGGCCGGCGTAGCAGCGTGTTCGATCCATTTTCTCTGGATATATGGGATCCATTAGAGGGGATGCAAATTCCAGGGACTCTGGCGAACGTTCCATCCTCGGGGGAAACAACGGCAATTGCAAACACTCGAATAGATTGGAGAGAGACGCCGGAGGCTCACATATTCAAGGCGGATCTGCCGGGGTTGAAGAAGGAGGAAGTGAAAGTGGAGGTTGAGGAAGGGAGAGTTCTGCAGATAAGTGGGGAGAGGAGCAAAGAAGAGGAGGAGAGGAATGAGAAATGGCACAGAGTGGAGCGGAGCATGGGGAAGTTCATGCGGCGGTTCCGGCTGCCGGAGAATGCAAAGATGGATGAGATTAAGGCGAATATGGAGAATGGAGTGCTGACTGTGATGGTACCTAAACAGGAGGAGAGGAGGCCACAAGTTAAGGCCATCGATATTGCGGGATAG

Protein sequence

MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGTLANVPSSGETTAIANTRIDWRETPEAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRLPENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG

Homology

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BLAST of Lsi03G003400 vs. ExPASy Swiss-Prot
Match: P19037 (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP18.1 PE=1 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-60
Identity = 114/159 (71.70%), Postives = 134/159 (84.28%), Query Frame = 0


Query: 1   MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGT-LANVPSSGETTAIANTRIDWRETP 60
           MSLIPS   GRRS+VFDPFS D+WDP EG   P + LAN  ++ +  A  N R+DW+ETP
Sbjct: 1   MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANASTARDVAAFTNARVDWKETP 60

Query: 61  EAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRL 120
           EAH+FKADLPGLKKEEVKVEVE+  VLQISGERSKE EE+N+KWHRVER+ GKFMRRFRL
Sbjct: 61  EAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRL 120

Query: 121 PENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           PENAKM+E+KA MENGVLTV+VPK  E++PQVK+IDI+G
Sbjct: 121 PENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159

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BLAST of Lsi03G003400 vs. ExPASy Swiss-Prot
Match: P13853 (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana OX=3702 GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 229.2 bits (583), Expect = 3.3e-59
Identity = 111/158 (70.25%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 1   MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGTLANVPSSGETTAIANTRIDWRETPE 60
           MSLIPS   GRR++VFDPFSLD++DP EG   P  LAN P+  +  A  N ++DWRETPE
Sbjct: 1   MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAM-DVAAFTNAKVDWRETPE 60

Query: 61  AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRLP 120
           AH+FKADLPGL+KEEVKVEVE+G +LQISGERS E EE+N+KWHRVERS GKF RRFRLP
Sbjct: 61  AHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLP 120

Query: 121 ENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           ENAKM+EIKA+MENGVL+V VPK  E++P+VK+IDI+G
Sbjct: 121 ENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157

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BLAST of Lsi03G003400 vs. ExPASy Swiss-Prot
Match: P19036 (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 228.0 bits (580), Expect = 7.3e-59
Identity = 108/158 (68.35%), Postives = 134/158 (84.81%), Query Frame = 0


Query: 1   MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGTLANVPSSGETTAIANTRIDWRETPE 60
           MSL+PSF  GRR++VFDPFSLD+WDP EG   PG L N P+  +  A  N ++DWRETPE
Sbjct: 1   MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPG-LTNAPAK-DVAAFTNAKVDWRETPE 60

Query: 61  AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRLP 120
           AH+FKAD+PGLKKEEVKVEVE+G +LQISGERS E EE+++ WHRVERS GKFMRRFRLP
Sbjct: 61  AHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLP 120

Query: 121 ENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           ENAK++E+KA+MENGVL+V VPK +E +P+VK++DI+G
Sbjct: 121 ENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156

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BLAST of Lsi03G003400 vs. ExPASy Swiss-Prot
Match: P27396 (17.8 kDa class I heat shock protein OS=Daucus carota OX=4039 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 6.2e-58
Identity = 110/158 (69.62%), Postives = 134/158 (84.81%), Query Frame = 0


Query: 1   MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGTLANVPSSGETTAIANTRIDWRETPE 60
           MS+IPSF  GRRS+VFDPFSLD+WDP +   +  + A+     ET A  NT IDW+ETP+
Sbjct: 1   MSIIPSFFGGRRSNVFDPFSLDVWDPFKDFPLVTSSAS-EFGKETAAFVNTHIDWKETPQ 60

Query: 61  AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRLP 120
           AH+FKADLPGLKKEEVKVE+EEG+VLQISGER+KE+EE+N+KWHRVERS GKF+RRFRLP
Sbjct: 61  AHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLP 120

Query: 121 ENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           ENAK+DE+KA M NGV+TV VPK E ++P+VKAIDI+G
Sbjct: 121 ENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157

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BLAST of Lsi03G003400 vs. ExPASy Swiss-Prot
Match: P02519 (17.3 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 6.2e-58
Identity = 107/158 (67.72%), Postives = 134/158 (84.81%), Query Frame = 0


Query: 1   MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGTLANVPSSGETTAIANTRIDWRETPE 60
           MSLIPSF  GRRSSVFDPFSLD+WDP +    P +L     S E +A  +TR+DW+ETPE
Sbjct: 1   MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSL-----SAENSAFVSTRVDWKETPE 60

Query: 61  AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRLP 120
           AH+FKAD+PGLKKEEVK+E+++GRVLQISGER+ E+E++N+ WHRVERS GK +RRFRLP
Sbjct: 61  AHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLP 120

Query: 121 ENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           ENAK+D++KA+MENGVLTV VPK+E ++P VKAIDI+G
Sbjct: 121 ENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153

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BLAST of Lsi03G003400 vs. ExPASy TrEMBL
Match: A0A6J1FFJ4 (17.4 kDa class I heat shock protein-like OS=Cucurbita moschata OX=3662 GN=LOC111445270 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.2e-74
Identity = 147/160 (91.88%), Postives = 152/160 (95.00%), Query Frame = 0


Query: 1   MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGTLANVPSS--GETTAIANTRIDWRET 60
           MSLIPSFLSGRR++VFDPFSLDIWDPLEGMQ PG+L  VPSS  GETTAIANTRIDWRET
Sbjct: 1   MSLIPSFLSGRRTNVFDPFSLDIWDPLEGMQFPGSLTKVPSSGAGETTAIANTRIDWRET 60

Query: 61  PEAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFR 120
           PEAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFR
Sbjct: 61  PEAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFR 120

Query: 121 LPENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           LPENAKMDEI A MENGVLTV VPKQEER+P+VKAIDIAG
Sbjct: 121 LPENAKMDEINAKMENGVLTVTVPKQEERKPEVKAIDIAG 160

[Close]

BLAST of Lsi03G003400 vs. ExPASy TrEMBL
Match: A0A6J1JZ77 (17.6 kDa class I heat shock protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111489198 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.9e-74
Identity = 146/160 (91.25%), Postives = 152/160 (95.00%), Query Frame = 0


Query: 1   MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGTLANVPS--SGETTAIANTRIDWRET 60
           MSLIPSF SGRR+ VFDPFSLDIWDPLEGMQ PG+LA VPS  +GETTAIANTRIDWRET
Sbjct: 1   MSLIPSFFSGRRTDVFDPFSLDIWDPLEGMQFPGSLAKVPSFGTGETTAIANTRIDWRET 60

Query: 61  PEAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFR 120
           PEAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKE+EERNEKWHRVERSMGKFMRRFR
Sbjct: 61  PEAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEDEERNEKWHRVERSMGKFMRRFR 120

Query: 121 LPENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           LPENAKMDEI A MENGVLTVMVPKQEER+P+VKAIDIAG
Sbjct: 121 LPENAKMDEINAKMENGVLTVMVPKQEERKPEVKAIDIAG 160

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BLAST of Lsi03G003400 vs. ExPASy TrEMBL
Match: A0A5D3DLG8 (17.8 kDa class I heat shock protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001440 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.7e-71
Identity = 142/158 (89.87%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 1   MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGTLANVPSSGETTAIANTRIDWRETPE 60
           MS+IPSF SGRRS+VFDPFSL++WDP EGMQ P      P+SGET+AIANTRIDWRETPE
Sbjct: 1   MSMIPSFFSGRRSNVFDPFSLELWDPSEGMQFP------PTSGETSAIANTRIDWRETPE 60

Query: 61  AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRLP 120
           AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRLP
Sbjct: 61  AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRLP 120

Query: 121 ENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           ENAKMDEIKANMENGVLTVMVPKQE RRPQVKAIDIAG
Sbjct: 121 ENAKMDEIKANMENGVLTVMVPKQEARRPQVKAIDIAG 152

[Close]

BLAST of Lsi03G003400 vs. ExPASy TrEMBL
Match: A0A1S3B456 (17.8 kDa class I heat shock protein-like OS=Cucumis melo OX=3656 GN=LOC103485543 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.7e-71
Identity = 142/158 (89.87%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 1   MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGTLANVPSSGETTAIANTRIDWRETPE 60
           MS+IPSF SGRRS+VFDPFSL++WDP EGMQ P      P+SGET+AIANTRIDWRETPE
Sbjct: 1   MSMIPSFFSGRRSNVFDPFSLELWDPSEGMQFP------PTSGETSAIANTRIDWRETPE 60

Query: 61  AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRLP 120
           AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRLP
Sbjct: 61  AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRLP 120

Query: 121 ENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           ENAKMDEIKANMENGVLTVMVPKQE RRPQVKAIDIAG
Sbjct: 121 ENAKMDEIKANMENGVLTVMVPKQEARRPQVKAIDIAG 152

[Close]

BLAST of Lsi03G003400 vs. ExPASy TrEMBL
Match: A0A0A0KD99 (SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G009400 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.3e-71
Identity = 143/158 (90.51%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGTLANVPSSGETTAIANTRIDWRETPE 60
           MSLIPSF SGRRS+VFDPFSL+IWDP+EGMQ P T      SGET AIANTRIDWRETPE
Sbjct: 1   MSLIPSFFSGRRSNVFDPFSLEIWDPIEGMQFPQT------SGETAAIANTRIDWRETPE 60

Query: 61  AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRLP 120
           AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEE+ERNEKWHRVERSMGKFMRRFRLP
Sbjct: 61  AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEDERNEKWHRVERSMGKFMRRFRLP 120

Query: 121 ENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           ENAKMDEIKANMENGVLTVMVPKQE RRPQVKAIDIAG
Sbjct: 121 ENAKMDEIKANMENGVLTVMVPKQEARRPQVKAIDIAG 152

[Close]

BLAST of Lsi03G003400 vs. NCBI nr
Match: XP_038886219.1 (17.3 kDa class I heat shock protein-like [Benincasa hispida])

HSP 1 Score: 291.6 bits (745), Expect = 4.1e-75
Identity = 147/158 (93.04%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 1   MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGTLANVPSSGETTAIANTRIDWRETPE 60
           MSLIPSF SGRRS+VFDP SLDIWDPLE MQ PGTLAN PSSGETTAIANTRIDW+ETPE
Sbjct: 1   MSLIPSFFSGRRSNVFDPLSLDIWDPLEMMQFPGTLANTPSSGETTAIANTRIDWKETPE 60

Query: 61  AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRLP 120
           AHI KADLPGLKKEEVKVEVEEGRV+QISGERSKEEEERNEKWHRVERSMGKFMRRFRLP
Sbjct: 61  AHILKADLPGLKKEEVKVEVEEGRVVQISGERSKEEEERNEKWHRVERSMGKFMRRFRLP 120

Query: 121 ENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           ENAKMDEIKANMENGVLTV VPKQEER+PQVKAIDIAG
Sbjct: 121 ENAKMDEIKANMENGVLTVTVPKQEERKPQVKAIDIAG 158

[Close]

BLAST of Lsi03G003400 vs. NCBI nr
Match: XP_023550896.1 (17.6 kDa class I heat shock protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 289.7 bits (740), Expect = 1.6e-74
Identity = 148/160 (92.50%), Postives = 153/160 (95.62%), Query Frame = 0


Query: 1   MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGTLANVPSS--GETTAIANTRIDWRET 60
           MSLIPSFLSGRR++VFDPFSLDIWDPLEGMQ PG+LA VPSS  GETTAIANTRIDWRET
Sbjct: 1   MSLIPSFLSGRRTNVFDPFSLDIWDPLEGMQFPGSLAKVPSSGAGETTAIANTRIDWRET 60

Query: 61  PEAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFR 120
           PEAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFR
Sbjct: 61  PEAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFR 120

Query: 121 LPENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           LPENAKMDEI A MENGVLTV VPKQEER+P+VKAIDIAG
Sbjct: 121 LPENAKMDEINAKMENGVLTVTVPKQEERKPEVKAIDIAG 160

[Close]

BLAST of Lsi03G003400 vs. NCBI nr
Match: XP_022939316.1 (17.4 kDa class I heat shock protein-like [Cucurbita moschata] >KAG6578434.1 17.6 kDa class I heat shock protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 288.1 bits (736), Expect = 4.6e-74
Identity = 147/160 (91.88%), Postives = 152/160 (95.00%), Query Frame = 0


Query: 1   MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGTLANVPSS--GETTAIANTRIDWRET 60
           MSLIPSFLSGRR++VFDPFSLDIWDPLEGMQ PG+L  VPSS  GETTAIANTRIDWRET
Sbjct: 1   MSLIPSFLSGRRTNVFDPFSLDIWDPLEGMQFPGSLTKVPSSGAGETTAIANTRIDWRET 60

Query: 61  PEAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFR 120
           PEAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFR
Sbjct: 61  PEAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFR 120

Query: 121 LPENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           LPENAKMDEI A MENGVLTV VPKQEER+P+VKAIDIAG
Sbjct: 121 LPENAKMDEINAKMENGVLTVTVPKQEERKPEVKAIDIAG 160

[Close]

BLAST of Lsi03G003400 vs. NCBI nr
Match: XP_022993074.1 (17.6 kDa class I heat shock protein 3-like [Cucurbita maxima])

HSP 1 Score: 287.7 bits (735), Expect = 6.0e-74
Identity = 146/160 (91.25%), Postives = 152/160 (95.00%), Query Frame = 0


Query: 1   MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGTLANVPS--SGETTAIANTRIDWRET 60
           MSLIPSF SGRR+ VFDPFSLDIWDPLEGMQ PG+LA VPS  +GETTAIANTRIDWRET
Sbjct: 1   MSLIPSFFSGRRTDVFDPFSLDIWDPLEGMQFPGSLAKVPSFGTGETTAIANTRIDWRET 60

Query: 61  PEAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFR 120
           PEAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKE+EERNEKWHRVERSMGKFMRRFR
Sbjct: 61  PEAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEDEERNEKWHRVERSMGKFMRRFR 120

Query: 121 LPENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           LPENAKMDEI A MENGVLTVMVPKQEER+P+VKAIDIAG
Sbjct: 121 LPENAKMDEINAKMENGVLTVMVPKQEERKPEVKAIDIAG 160

[Close]

BLAST of Lsi03G003400 vs. NCBI nr
Match: XP_008441421.1 (PREDICTED: 17.8 kDa class I heat shock protein-like [Cucumis melo] >KAA0041488.1 17.8 kDa class I heat shock protein-like [Cucumis melo var. makuwa] >TYK24362.1 17.8 kDa class I heat shock protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 278.5 bits (711), Expect = 3.6e-71
Identity = 142/158 (89.87%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 1   MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGTLANVPSSGETTAIANTRIDWRETPE 60
           MS+IPSF SGRRS+VFDPFSL++WDP EGMQ P      P+SGET+AIANTRIDWRETPE
Sbjct: 1   MSMIPSFFSGRRSNVFDPFSLELWDPSEGMQFP------PTSGETSAIANTRIDWRETPE 60

Query: 61  AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRLP 120
           AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRLP
Sbjct: 61  AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRLP 120

Query: 121 ENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           ENAKMDEIKANMENGVLTVMVPKQE RRPQVKAIDIAG
Sbjct: 121 ENAKMDEIKANMENGVLTVMVPKQEARRPQVKAIDIAG 152

[Close]

BLAST of Lsi03G003400 vs. TAIR 10
Match: AT5G59720.1 (heat shock protein 18.2 )

HSP 1 Score: 233.8 bits (595), Expect = 9.5e-62
Identity = 114/159 (71.70%), Postives = 134/159 (84.28%), Query Frame = 0


Query: 1   MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGT-LANVPSSGETTAIANTRIDWRETP 60
           MSLIPS   GRRS+VFDPFS D+WDP EG   P + LAN  ++ +  A  N R+DW+ETP
Sbjct: 1   MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANASTARDVAAFTNARVDWKETP 60

Query: 61  EAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRL 120
           EAH+FKADLPGLKKEEVKVEVE+  VLQISGERSKE EE+N+KWHRVER+ GKFMRRFRL
Sbjct: 61  EAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRL 120

Query: 121 PENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           PENAKM+E+KA MENGVLTV+VPK  E++PQVK+IDI+G
Sbjct: 121 PENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159

[Close]

BLAST of Lsi03G003400 vs. TAIR 10
Match: AT1G53540.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 229.2 bits (583), Expect = 2.3e-60
Identity = 111/158 (70.25%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 1   MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGTLANVPSSGETTAIANTRIDWRETPE 60
           MSLIPS   GRR++VFDPFSLD++DP EG   P  LAN P+  +  A  N ++DWRETPE
Sbjct: 1   MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAM-DVAAFTNAKVDWRETPE 60

Query: 61  AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRLP 120
           AH+FKADLPGL+KEEVKVEVE+G +LQISGERS E EE+N+KWHRVERS GKF RRFRLP
Sbjct: 61  AHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLP 120

Query: 121 ENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           ENAKM+EIKA+MENGVL+V VPK  E++P+VK+IDI+G
Sbjct: 121 ENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157

[Close]

BLAST of Lsi03G003400 vs. TAIR 10
Match: AT3G46230.1 (heat shock protein 17.4 )

HSP 1 Score: 228.0 bits (580), Expect = 5.2e-60
Identity = 108/158 (68.35%), Postives = 134/158 (84.81%), Query Frame = 0


Query: 1   MSLIPSFLSGRRSSVFDPFSLDIWDPLEGMQIPGTLANVPSSGETTAIANTRIDWRETPE 60
           MSL+PSF  GRR++VFDPFSLD+WDP EG   PG L N P+  +  A  N ++DWRETPE
Sbjct: 1   MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPG-LTNAPAK-DVAAFTNAKVDWRETPE 60

Query: 61  AHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRLP 120
           AH+FKAD+PGLKKEEVKVEVE+G +LQISGERS E EE+++ WHRVERS GKFMRRFRLP
Sbjct: 61  AHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLP 120

Query: 121 ENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           ENAK++E+KA+MENGVL+V VPK +E +P+VK++DI+G
Sbjct: 121 ENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156

[Close]

BLAST of Lsi03G003400 vs. TAIR 10
Match: AT1G07400.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 205.3 bits (521), Expect = 3.6e-53
Identity = 103/162 (63.58%), Postives = 130/162 (80.25%), Query Frame = 0


Query: 1   MSLIPSFLSGRR--SSVFDPFSLDIWDPLEGMQIPGTLANVPSSGETTAIANTRIDWRET 60
           MSLIPSF    R  +S+FDPFSLD+WDP + +Q P +L     SGET+AI N R+DW+ET
Sbjct: 1   MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKELQFPSSL-----SGETSAITNARVDWKET 60

Query: 61  PEAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFR 120
            EAH+FKADLPG+KKEEVKVE+E+  VL+ISGER  E+EE+ + WHRVERS G+F R+F+
Sbjct: 61  AEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFK 120

Query: 121 LPENAKMDEIKANMENGVLTVMVPKQEE--RRPQVKAIDIAG 159
           LPEN KMD++KA+MENGVLTV VPK EE  ++ QVK+IDI+G
Sbjct: 121 LPENVKMDQVKASMENGVLTVTVPKVEEAKKKAQVKSIDISG 157

[Close]

BLAST of Lsi03G003400 vs. TAIR 10
Match: AT2G29500.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 202.2 bits (513), Expect = 3.1e-52
Identity = 102/159 (64.15%), Postives = 125/159 (78.62%), Query Frame = 0


Query: 1   MSLIPSFL-SGRRSSVFDPFSLDIWDPLEGMQIPGTLANVPSSGETTAIANTRIDWRETP 60
           MS+IPSF  + RRS++FDPFSLD+WDP +       L +   S E +AI N R+DWRETP
Sbjct: 1   MSMIPSFFNNNRRSNIFDPFSLDVWDPFK------ELTSSSLSRENSAIVNARVDWRETP 60

Query: 61  EAHIFKADLPGLKKEEVKVEVEEGRVLQISGERSKEEEERNEKWHRVERSMGKFMRRFRL 120
           EAH+FKADLPGLKKEEVKVE+EE  VL+ISGER  E+E++N+ WHRVERS G+F RRFRL
Sbjct: 61  EAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRL 120

Query: 121 PENAKMDEIKANMENGVLTVMVPKQEERRPQVKAIDIAG 159
           PEN KMD++KA MENGVLTV VPK E ++  VK+I I+G
Sbjct: 121 PENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153

The following BLAST results are available for this feature:

BLAST of Lsi03G003400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19037	1.3e-60	71.70	18.1 kDa class I heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP18.1 P...	[more]
P13853	3.3e-59	70.25	17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana OX=3702 GN=HSP17.6...	[more]
P19036	7.3e-59	68.35	17.4 kDa class I heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP17.4A ...	[more]
P27396	6.2e-58	69.62	17.8 kDa class I heat shock protein OS=Daucus carota OX=4039 PE=3 SV=1	[more]
P02519	6.2e-58	67.72	17.3 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP17.3-B PE=3 SV=...	[more]

BLAST of Lsi03G003400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FFJ4	2.2e-74	91.88	17.4 kDa class I heat shock protein-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JZ77	2.9e-74	91.25	17.6 kDa class I heat shock protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A5D3DLG8	1.7e-71	89.87	17.8 kDa class I heat shock protein-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3B456	1.7e-71	89.87	17.8 kDa class I heat shock protein-like OS=Cucumis melo OX=3656 GN=LOC103485543...	[more]
A0A0A0KD99	2.3e-71	90.51	SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G009400 PE=3 S...	[more]

BLAST of Lsi03G003400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886219.1	4.1e-75	93.04	17.3 kDa class I heat shock protein-like [Benincasa hispida]	[more]
XP_023550896.1	1.6e-74	92.50	17.6 kDa class I heat shock protein 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022939316.1	4.6e-74	91.88	17.4 kDa class I heat shock protein-like [Cucurbita moschata] >KAG6578434.1 17.6...	[more]
XP_022993074.1	6.0e-74	91.25	17.6 kDa class I heat shock protein 3-like [Cucurbita maxima]	[more]
XP_008441421.1	3.6e-71	89.87	PREDICTED: 17.8 kDa class I heat shock protein-like [Cucumis melo] >KAA0041488.1...	[more]

BLAST of Lsi03G003400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59720.1	9.5e-62	71.70	heat shock protein 18.2	[more]
AT1G53540.1	2.3e-60	70.25	HSP20-like chaperones superfamily protein	[more]
AT3G46230.1	5.2e-60	68.35	heat shock protein 17.4	[more]
AT1G07400.1	3.6e-53	63.58	HSP20-like chaperones superfamily protein	[more]
AT2G29500.1	3.1e-52	64.15	HSP20-like chaperones superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 9..158 e-value: 1.6E-48 score: 166.2
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 38..157
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 54..156 e-value: 1.0E-30 score: 105.9
IPR002068	Alpha crystallin/Hsp20 domain	PROSITE	PS01031	SHSP	coord: 44..158 score: 31.168856
None	No IPR available	PANTHER	PTHR11527:SF325	17.8 KDA CLASS I HEAT SHOCK PROTEIN-LIKE	coord: 1..158
None	No IPR available	CDD	cd06472	ACD_ScHsp26_like	coord: 52..143 e-value: 3.59643E-47 score: 146.296
IPR031107	Small heat shock protein HSP20	PANTHER	PTHR11527	HEAT-SHOCK PROTEIN 20 FAMILY MEMBER	coord: 1..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G003400.1	Lsi03G003400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051259	protein complex oligomerization
biological_process	GO:0006457	protein folding
biological_process	GO:0009408	response to heat
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0009651	response to salt stress
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0043621	protein self-association
molecular_function	GO:0051082	unfolded protein binding