Lsi03G003280 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G003280
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	GATA type zinc finger transcription factor family protein
Location	chr03: 3943772 .. 3946125 (+)
RNA-Seq Expression	Lsi03G003280
Synteny	Lsi03G003280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGGACACAATTCTTGCTAACCTGATCTTTATCTTTTTTGTTCTTTCTTTTCTTTTCCATTTTAATTATGTCTAATGCGTTGTAATCAGATACATTAATCAATAAAATCCTTTCTTTAATTTTTCTCTTTATTATTACCCCAAATTCGAACATAAAACTCCCACTACGCTGCGCCAAAAGGGGGTCCAATCCAATCCTTCTTCTTGTTTTTCTCTTCTTCCCACGATTTTTCTTCCCTTTTCCCCTCGACCCTTTTCCCCATCTCGAATATCTCTGACGATTTCGCTTTTGGGTTCTTTGTTTTGCTACTTTTGGTTTACAGATCCACCGTTTTTCCAATCTCTAATCTCAGGTATGTGATTTTAACTCGATTTTCTTTCACATTTCCCAGATCACGATTGATTTTTGCGTCTTTAAGATCTTTGTTGCCTATTTCTATTGTTAAACAGTCTTGATTCTGGGTTTATTGGCTTCAGGTTCATGTTTGTTTGTTGTAATTTTATAATCTAGTCTTGAATGGGTTCGGGAGTTTGAAGTTAATCTCTCTGTGTTGAAAATATTTTTGCATTTTCTTCTACACGAAACAGAAATGGATTTGAGGAGCATATGTAATCAGTTTGATTAATGTAATGCTTATGATTTTGATCTAACAAAACAGAGAAGGGAAGTTAACTTTGAGAGTTGGGGATTGCCTGTCATCTTGGTTGGTTGGGTGAAAAAGGCTCAGATCTAACTCCAAGGGCTTAGCTATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTGGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAGTCCTGCTTTAAATGCAGCCACTGCAAAGGGACTCTAAAGGTATTGCACTGTGTTTTTTGGGCTGGATTCGCATCTTTAATATACCTAAATCGTCTCTGAACCAAAGGGTTAGGATATATTTATTCTTTCATATGTGTTTTGGAAGCTCTGGTACTATGCTAATTGACATGACAACTAAATTTAAAAGCTTAAGTTGATTGGTTATAGATATATTCTTTTACATGTATTCGTAATAAGGCTTTCTACTCAGTATTGGGGAATCTAAGCATCTTGCCAAACTATTTTCTAAAGGATATCTAAATGTGGCATCAACTTCTGCCTCAAGTATCCATCTGTTGATGTATCTATCACAAGTAAACACAACCTAGATATCAAAGCTTTCCAAGTATGGTTAGAATTGGGTAAATGGCGTTTAACTATTTAGTATGATGACTCCTGATATTGACTCGAGCGATAACAAGAGATTTTCTAGAAGGATTGGAAGGTGGTTTATGTTTTTTAAGAATTGGAACTCTATCTTACTGTTAATAACCTTGATCTTTGCTTGCCTTCAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAACTTCCAGAAGAACTTCCAATCACGTACGCTCTGATTTCTTTCAGATAACTTTATGTTTCACTTCCCAAAAATTTTGCTTTCACATATTTAATTGTTTTTGAGTTTTATTTTCTACAGCTGCCAAGTCAACTGAGAAGTTAACACCAGAGCTGGTAATTTCCTGTTGTAATCAATTGTAATCTGATATTGGGAAGCTTTTTCTCCAAGGAGATAAAATTATGTTGTGTATTGCAACTGATTCTTGTAACCACTAACTGGTTTCAGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGTAAAACTGTCTATCCATTAGAGAAGGTAACCCACCTACTGAGATCTTGACAAATAATTCATTATCCCCTCCCCCTTCAACAAAAGGAAGAGTGAATATTTGTTGGAGCATCCAATCTATGATGCATTAATGCATGAATGAACATCTGTTGGAGCAGACTAATTAGTTTTGGTTCAAGTTTTGAAATAAAGCTGTGAAGATACAAAATTTGAACAGTGCCATTGGGGATTAGTGGATGTTCTTAGTTGCATAGATTAAAATATTCATCACATTGTTAGTATATTTCAATTGATAGTTTTGTAGAGGATTTTATGAATTTGTTATTACAAATACTTGCAGGTAACAGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTATATCCCCATCAAATTATGCAGCATTAGAAGGTATTCTATATTGCAAACATCACTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGGTCCGCTGCTCCCATTCCTGAAGCTTAA

mRNA sequence

GTGGGACACAATTCTTGCTAACCTGATCTTTATCTTTTTTGTTCTTTCTTTTCTTTTCCATTTTAATTATGTCTAATGCGTTGTAATCAGATACATTAATCAATAAAATCCTTTCTTTAATTTTTCTCTTTATTATTACCCCAAATTCGAACATAAAACTCCCACTACGCTGCGCCAAAAGGGGGTCCAATCCAATCCTTCTTCTTGTTTTTCTCTTCTTCCCACGATTTTTCTTCCCTTTTCCCCTCGACCCTTTTCCCCATCTCGAATATCTCTGACGATTTCGCTTTTGGGTTCTTTGTTTTGCTACTTTTGGTTTACAGATCCACCGTTTTTCCAATCTCTAATCTCAGAGAAGGGAAGTTAACTTTGAGAGTTGGGGATTGCCTGTCATCTTGGTTGGTTGGGTGAAAAAGGCTCAGATCTAACTCCAAGGGCTTAGCTATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTGGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAGTCCTGCTTTAAATGCAGCCACTGCAAAGGGACTCTAAAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAACTTCCAGAAGAACTTCCAATCACCTGCCAAGTCAACTGAGAAGTTAACACCAGAGCTGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGTAAAACTGTCTATCCATTAGAGAAGGTAACAGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTATATCCCCATCAAATTATGCAGCATTAGAAGGTATTCTATATTGCAAACATCACTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGGTCCGCTGCTCCCATTCCTGAAGCTTAA

Coding sequence (CDS)

ATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTGGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAGTCCTGCTTTAAATGCAGCCACTGCAAAGGGACTCTAAAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAACTTCCAGAAGAACTTCCAATCACCTGCCAAGTCAACTGAGAAGTTAACACCAGAGCTGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGTAAAACTGTCTATCCATTAGAGAAGGTAACAGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTATATCCCCATCAAATTATGCAGCATTAGAAGGTATTCTATATTGCAAACATCACTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGGTCCGCTGCTCCCATTCCTGAAGCTTAA

Protein sequence

MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPIPEA

Homology

[Close]

BLAST of Lsi03G003280 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.2e-92
Identity = 158/184 (85.87%), Postives = 171/184 (92.93%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+F KNFQSPAKS +K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RSAA 185
           RSAA
Sbjct: 181 RSAA 184

[Close]

BLAST of Lsi03G003280 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 3.9e-91
Identity = 156/185 (84.32%), Postives = 171/185 (92.43%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKC+ACEKTVYPVE LSADG+SYHK+CFKCSHCK  L+LSNYSSMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKETGNFQKNFQSPAKS-TEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLE 120
           HFEQLFKE+G+F KNFQSPAK  T+K TPEL R+PS+ AGMFSGTQDKCATC KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASM 180
           KVTVESQ YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KRSAA 185
           KR+ A
Sbjct: 181 KRATA 185

[Close]

BLAST of Lsi03G003280 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.6e-71
Identity = 122/184 (66.30%), Postives = 152/184 (82.61%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KCKAC+KTVY ++ L+ +G +YHKSCF+C+HCKGTL +SNYSSM+GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GN+ KNFQ  A  TEK    LTR+PSK +  FSGTQDKCATC KTVYPLEK
Sbjct: 61  HFEQLFKESGNYSKNFQ--AGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VT+E +SYHK+CF+C+H GC ++ S+YA+L G+LYCK HF+QLF EKGSYNH+ ++A+  
Sbjct: 121 VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANH 180

Query: 181 RSAA 185
           R +A
Sbjct: 181 RRSA 182

[Close]

BLAST of Lsi03G003280 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 8.5e-70
Identity = 117/184 (63.59%), Postives = 154/184 (83.70%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KC  C+KTVY V+ LS +G+ YHKSCF+C+HCKGTL++SNYSSM+GVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNF KNFQ P K TEK  PELTR+PSK + +F GTQDKCA C KTVYPLEK
Sbjct: 61  HFEQLFKESGNFSKNFQ-PGK-TEK--PELTRTPSKISSIFCGTQDKCAACEKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           + +E + +HK+CF+C+HGGC ++ S+YA+L+ +LYC+HHF+QLF EKG+Y H++++A+ +
Sbjct: 121 IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHR 180

Query: 181 RSAA 185
           R+A+
Sbjct: 181 RTAS 180

[Close]

BLAST of Lsi03G003280 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.1e-69
Identity = 124/189 (65.61%), Postives = 147/189 (77.78%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQ KC AC+KTV+ ++ L+ADGV YHK+CFKCSHCKG L + +YSSM+GVLYCK 
Sbjct: 1   MSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETG+F K F    +ST+K   EL R+PSK    FSGTQDKCA C KTVYPLEK
Sbjct: 61  HFEQLFKETGSFSKKFAPGCRSTDK---ELARAPSKICSAFSGTQDKCAACQKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHL-IKSASM 180
           +T+E +SYHKSCFKCSHGGC ++ S+YAAL G+LYCK HF QLF EKGSYNH+  KS S 
Sbjct: 121 LTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHMKKKSESQ 180

Query: 181 KRSAAPIPE 189
           +     +PE
Sbjct: 181 EVLPEVVPE 186

[Close]

BLAST of Lsi03G003280 vs. ExPASy TrEMBL
Match: A0A1S3B3E4 (LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.7e-105
Identity = 185/189 (97.88%), Postives = 187/189 (98.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNF KNFQSPAKS EKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCA+SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPIPEA 190
           RSAAP+PEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of Lsi03G003280 vs. ExPASy TrEMBL
Match: A0A0A0KAA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.7e-105
Identity = 185/189 (97.88%), Postives = 187/189 (98.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNF KNFQSPAKS EKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCA+SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPIPEA 190
           RSAAP+PEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of Lsi03G003280 vs. ExPASy TrEMBL
Match: A0A6J1K140 (LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111489197 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 6.0e-103
Identity = 181/189 (95.77%), Postives = 184/189 (97.35%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNF KNFQSPAKS EKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC+ISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPIPEA 190
           R AA +PEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Lsi03G003280 vs. ExPASy TrEMBL
Match: A0A6J1FFI9 (LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC111445264 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 6.0e-103
Identity = 181/189 (95.77%), Postives = 184/189 (97.35%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNF KNFQSPAKS EKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC+ISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPIPEA 190
           R AA +PEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Lsi03G003280 vs. ExPASy TrEMBL
Match: A0A059BIA9 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G03023 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 6.2e-100
Identity = 176/189 (93.12%), Postives = 181/189 (95.77%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQ KCKACEKTVYPVEQLSADGV+YHKSCFKCSHCKGTLKLS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQVKCKACEKTVYPVEQLSADGVAYHKSCFKCSHCKGTLKLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNF KNFQSPAKS +KLTPEL RSPSKAAGMFSGTQDKCATCGKT YPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSADKLTPELARSPSKAAGMFSGTQDKCATCGKTAYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC I+PSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPIPEA 190
           R+AA IPEA
Sbjct: 181 RAAASIPEA 189

[Close]

BLAST of Lsi03G003280 vs. NCBI nr
Match: XP_004138434.1 (LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_008441431.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_011656401.1 LIM domain-containing protein WLIM2b [Cucumis sativus] >KGN45769.1 hypothetical protein Csa_005194 [Cucumis sativus])

HSP 1 Score: 391.7 bits (1005), Expect = 3.5e-105
Identity = 185/189 (97.88%), Postives = 187/189 (98.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNF KNFQSPAKS EKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCA+SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPIPEA 190
           RSAAP+PEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of Lsi03G003280 vs. NCBI nr
Match: XP_038884117.1 (LIM domain-containing protein WLIM2b [Benincasa hispida] >XP_038884118.1 LIM domain-containing protein WLIM2b [Benincasa hispida])

HSP 1 Score: 390.2 bits (1001), Expect = 1.0e-104
Identity = 184/189 (97.35%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYPVEQLSADG+SYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPVEQLSADGISYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNF KNFQSPAKS EKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPIPEA 190
           RSAAP+PEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of Lsi03G003280 vs. NCBI nr
Match: XP_022939310.1 (LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939312.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022993072.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022993073.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >KAG7015999.1 LIM domain-containing protein WLIM2b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 383.3 bits (983), Expect = 1.2e-102
Identity = 181/189 (95.77%), Postives = 184/189 (97.35%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNF KNFQSPAKS EKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC+ISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPIPEA 190
           R AA +PEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Lsi03G003280 vs. NCBI nr
Match: KAG6578438.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 382.1 bits (980), Expect = 2.8e-102
Identity = 180/189 (95.24%), Postives = 184/189 (97.35%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCK+CEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKSCEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNF KNFQSPAKS EKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC+ISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPIPEA 190
           R AA +PEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Lsi03G003280 vs. NCBI nr
Match: XP_023550254.1 (LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382.1 bits (980), Expect = 2.8e-102
Identity = 180/189 (95.24%), Postives = 184/189 (97.35%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNF KNFQSPAKS EKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC+ISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPIPEA 190
           R AA +PEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Lsi03G003280 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 340.5 bits (872), Expect = 8.6e-94
Identity = 158/184 (85.87%), Postives = 171/184 (92.93%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+F KNFQSPAKS +K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RSAA 185
           RSAA
Sbjct: 181 RSAA 184

[Close]

BLAST of Lsi03G003280 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 340.5 bits (872), Expect = 8.6e-94
Identity = 158/184 (85.87%), Postives = 171/184 (92.93%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+F KNFQSPAKS +K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RSAA 185
           RSAA
Sbjct: 181 RSAA 184

[Close]

BLAST of Lsi03G003280 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 340.5 bits (872), Expect = 8.6e-94
Identity = 158/184 (85.87%), Postives = 171/184 (92.93%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+F KNFQSPAKS +K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RSAA 185
           RSAA
Sbjct: 181 RSAA 184

[Close]

BLAST of Lsi03G003280 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 340.5 bits (872), Expect = 8.6e-94
Identity = 158/184 (85.87%), Postives = 171/184 (92.93%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+F KNFQSPAKS +K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RSAA 185
           RSAA
Sbjct: 181 RSAA 184

[Close]

BLAST of Lsi03G003280 vs. TAIR 10
Match: AT3G55770.5 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 340.5 bits (872), Expect = 8.6e-94
Identity = 158/184 (85.87%), Postives = 171/184 (92.93%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFQKNFQSPAKSTEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+F KNFQSPAKS +K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RSAA 185
           RSAA
Sbjct: 181 RSAA 184

The following BLAST results are available for this feature:

BLAST of Lsi03G003280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M047	1.2e-92	85.87	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O04193	3.9e-91	84.32	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
O80839	2.6e-71	66.30	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]
Q1ECF5	8.5e-70	63.59	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]
Q7F9R9	1.1e-69	65.61	LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of Lsi03G003280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B3E4	1.7e-105	97.88	LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=...	[more]
A0A0A0KAA4	1.7e-105	97.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1	[more]
A0A6J1K140	6.0e-103	95.77	LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111489197...	[more]
A0A6J1FFI9	6.0e-103	95.77	LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC1114452...	[more]
A0A059BIA9	6.2e-100	93.12	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G03023 PE=4 SV...	[more]

BLAST of Lsi03G003280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138434.1	3.5e-105	97.88	LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED...	[more]
XP_038884117.1	1.0e-104	97.35	LIM domain-containing protein WLIM2b [Benincasa hispida] >XP_038884118.1 LIM dom...	[more]
XP_022939310.1	1.2e-102	95.77	LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM do...	[more]
KAG6578438.1	2.8e-102	95.24	LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_023550254.1	2.8e-102	95.24	LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi03G003280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55770.1	8.6e-94	85.87	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	8.6e-94	85.87	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	8.6e-94	85.87	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.4	8.6e-94	85.87	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.5	8.6e-94	85.87	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 107..159 e-value: 9.8E-13 score: 58.3 coord: 9..61 e-value: 8.0E-14 score: 61.9
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 10..65 e-value: 2.4E-12 score: 46.9 coord: 108..163 e-value: 7.4E-11 score: 42.1
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.672
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 106..166 score: 12.5137
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 4..74 e-value: 4.6E-21 score: 76.8 coord: 102..172 e-value: 6.1E-20 score: 73.2
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..189
None	No IPR available	PANTHER	PTHR24206:SF94	LIM DOMAIN-CONTAINING PROTEIN WLIM2B	coord: 1..189
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 108..168 e-value: 4.51587E-37 score: 121.038
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 4.99639E-42 score: 133.744
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 100..133
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 134..173
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G003280.1	Lsi03G003280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding