Lsi03G003190 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G003190
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	WUSCHEL-related homeobox 5
Location	chr03: 3862588 .. 3863436 (+)
RNA-Seq Expression	Lsi03G003190
Synteny	Lsi03G003190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATGGGGTTTGTTCTAGAATATATGTAAAAGGGGGAGGGGGATGCGGCGGAGAGAGCGGTGGCGGGGGAGGCGGAAAAGGGAGTGGAAGTAGCAAATGTGGGAGATGGAATCCAACAGCAGAACAAGTAAAAGTGCTGACAGAGTTGTTCAGGTCAGGGCTTAGAACTCCGAGTAGTGATCAGATTCAGAAAATCTCTCATCATCTCAGCTTTTACGGCAAGATCGAGAGCAAGAATGTGTTTTACTGGTTTCAGAATCATAAAGCTCGTGAGCGACAAAAGCGTCGTAAACTTTCTCTTCCTCAACAACAACAACAACAACATTTCATTCTTCCACCTTCTTCTAACCACCAACGTAGGTTTCTTTTAATCACTTTCTATTAATCACTTTTTAAGTGCTTAAAAACACGAATTTAGGAGATATCTTCTTTTATAAACACTTGAAAAAGTCTTTCCAAACTGACTGACTCATAAAATCACGATCTAAGTACTTATAAACATGAATCTAGGAGATATCTTCTCTTATAAATACTTGAAAAGTCATTTCCAAACTGACTGACTCGGAGTGTTTTTAATTGTTTCATGGTTTTGTGTTTTGGGGTTTGAGCAGATTTTGCAGATCAGTCTAAGGGAATAATGGAGTTGGAGCCAGAAAGAATGATGAGAACGCTTCAACTTTTTCCATTAAACTCTTCCATTGATGAAACACAAGGATTACCAGAGGATCATCATCATCAGTTTAGAGTAAATGGAATGCAGTACGAGGATGCCACAGCTTTCACCTACAAAATAGAGACAAAAATGGATCATCCACCATTGGATCTTCGTTTAAGCTTTCTGTAG

mRNA sequence

ATGGAGGATGGGGTTTGTTCTAGAATATATGTAAAAGGGGGAGGGGGATGCGGCGGAGAGAGCGGTGGCGGGGGAGGCGGAAAAGGGAGTGGAAGTAGCAAATGTGGGAGATGGAATCCAACAGCAGAACAAGTAAAAGTGCTGACAGAGTTGTTCAGGTCAGGGCTTAGAACTCCGAGTAGTGATCAGATTCAGAAAATCTCTCATCATCTCAGCTTTTACGGCAAGATCGAGAGCAAGAATGTGTTTTACTGGTTTCAGAATCATAAAGCTCGTGAGCGACAAAAGCGTCGTAAACTTTCTCTTCCTCAACAACAACAACAACAACATTTCATTCTTCCACCTTCTTCTAACCACCAACATTTTGCAGATCAGTCTAAGGGAATAATGGAGTTGGAGCCAGAAAGAATGATGAGAACGCTTCAACTTTTTCCATTAAACTCTTCCATTGATGAAACACAAGGATTACCAGAGGATCATCATCATCAGTTTAGAGTAAATGGAATGCAGTACGAGGATGCCACAGCTTTCACCTACAAAATAGAGACAAAAATGGATCATCCACCATTGGATCTTCGTTTAAGCTTTCTGTAG

Coding sequence (CDS)

ATGGAGGATGGGGTTTGTTCTAGAATATATGTAAAAGGGGGAGGGGGATGCGGCGGAGAGAGCGGTGGCGGGGGAGGCGGAAAAGGGAGTGGAAGTAGCAAATGTGGGAGATGGAATCCAACAGCAGAACAAGTAAAAGTGCTGACAGAGTTGTTCAGGTCAGGGCTTAGAACTCCGAGTAGTGATCAGATTCAGAAAATCTCTCATCATCTCAGCTTTTACGGCAAGATCGAGAGCAAGAATGTGTTTTACTGGTTTCAGAATCATAAAGCTCGTGAGCGACAAAAGCGTCGTAAACTTTCTCTTCCTCAACAACAACAACAACAACATTTCATTCTTCCACCTTCTTCTAACCACCAACATTTTGCAGATCAGTCTAAGGGAATAATGGAGTTGGAGCCAGAAAGAATGATGAGAACGCTTCAACTTTTTCCATTAAACTCTTCCATTGATGAAACACAAGGATTACCAGAGGATCATCATCATCAGTTTAGAGTAAATGGAATGCAGTACGAGGATGCCACAGCTTTCACCTACAAAATAGAGACAAAAATGGATCATCCACCATTGGATCTTCGTTTAAGCTTTCTGTAG

Protein sequence

MEDGVCSRIYVKGGGGCGGESGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQQQQHFILPPSSNHQHFADQSKGIMELEPERMMRTLQLFPLNSSIDETQGLPEDHHHQFRVNGMQYEDATAFTYKIETKMDHPPLDLRLSFL

Homology

[Close]

BLAST of Lsi03G003190 vs. ExPASy Swiss-Prot
Match: Q8H1D2 (WUSCHEL-related homeobox 5 OS=Arabidopsis thaliana OX=3702 GN=WOX5 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 9.2e-35
Identity = 95/199 (47.74%), Postives = 125/199 (62.81%), Query Frame = 0


Query: 11  VKGGGGCGGESGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHH 70
           VKG    G  +GG G       +KCGRWNPT EQ+K+LT+LFR+GLRTP++DQIQKIS  
Sbjct: 5   VKGRSLRGNNNGGTG-------TKCGRWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTE 64

Query: 71  LSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQQQQHFILPPSSNHQHFADQSKGIM 130
           LSFYGKIESKNVFYWFQNHKARERQKRRK+S+               +H H    ++ + 
Sbjct: 65  LSFYGKIESKNVFYWFQNHKARERQKRRKISI-------------DFDHHHHQPSTRDVF 124

Query: 131 EL------EPERMMRTLQLFPLNSSIDETQGLPEDH---HHQFRVNGMQYEDATAFT--Y 190
           E+      E E+++ TLQLFP+NS  D    + +     ++Q+R   ++    T+F+   
Sbjct: 125 EISEEDCQEEEKVIETLQLFPVNSFEDSNSKVDKMRARGNNQYR-EYIRETTTTSFSPYS 182

Query: 191 KIETKMDH-PPLDLRLSFL 198
               +M+H PPLDLRLSFL
Sbjct: 185 SCGAEMEHPPPLDLRLSFL 182

[Close]

BLAST of Lsi03G003190 vs. ExPASy Swiss-Prot
Match: Q9FFK0 (WUSCHEL-related homeobox 7 OS=Arabidopsis thaliana OX=3702 GN=WOX7 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-26
Identity = 67/99 (67.68%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 11  VKGGGGCGGESGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHH 70
           +K  G C   +GGGG G     +KCGRWNPT EQVK+LT+LF++GLRTPS+DQIQKIS  
Sbjct: 8   IKARGLCNNNNGGGGTG-----AKCGRWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISME 67

Query: 71  LSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQQQQ 110
           LSFYGKIESKNVFYWFQNHKARERQK RK+S  +   +Q
Sbjct: 68  LSFYGKIESKNVFYWFQNHKARERQKCRKISTVKFDHRQ 101

[Close]

BLAST of Lsi03G003190 vs. ExPASy Swiss-Prot
Match: Q8W0F1 (WUSCHEL-related homeobox 9 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX9 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-26
Identity = 84/192 (43.75%), Postives = 105/192 (54.69%), Query Frame = 0


Query: 34  KCGRWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHHLSFYGKIESKNVFYWFQNHKARE 93
           KCGRWNPTAEQVKVLTELFR+GLRTPS++QIQ+IS HLS +GK+ESKNVFYWFQNHKARE
Sbjct: 11  KCGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQNHKARE 70

Query: 94  R----QKRRKLSLPQQQQQQH-------------FILPPSS---------NHQHFADQSK 153
           R    ++RR  S P                     + PP S         +H+      +
Sbjct: 71  RHHHKKRRRGASSPDSGSNDDDGRAAAHEGDADLVLQPPESKREARSYGHHHRLMTCYVR 130

Query: 154 GIMELE-----PERMMRTLQLFPLNSSIDETQGLPEDHHHQFRVNGMQYEDATAFTYKIE 195
            ++E E     P R + TL+LFPL S       L  D     R  G +     +F + + 
Sbjct: 131 DVVETEAMWERPTREVETLELFPLKS-----YDLEVDKVRYVRGGGGEQCREISF-FDVA 190

[Close]

BLAST of Lsi03G003190 vs. ExPASy Swiss-Prot
Match: Q9SIB4 (WUSCHEL-related homeobox 3 OS=Arabidopsis thaliana OX=3702 GN=WOX3 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.0e-22
Identity = 58/141 (41.13%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 37  RWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQK 96
           RW PT EQ+ +L E++RSG+RTP++ QIQ+I+ HL+FYG+IE KNVFYWFQNHKAR+RQK
Sbjct: 8   RWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQK 67

Query: 97  RRKLSLPQQQQQQHFILPPSSNHQHFADQSKGIMELEPERMMRTLQLFPLNSSIDETQGL 156
            RK    Q  QQQH +                + +++P+ +   +   P+N +I +    
Sbjct: 68  LRKKLAKQLHQQQHQL-------------QLQLQQIKPKPISSMISQ-PVNKNIIDHHNP 127

Query: 157 PEDHHHQFRVNGMQYEDATAF 178
              HHH    N  +  D  +F
Sbjct: 128 YHHHHHNHHHNHHRPYDHMSF 134

[Close]

BLAST of Lsi03G003190 vs. ExPASy Swiss-Prot
Match: Q25AM2 (WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. indica OX=39946 GN=WOX4 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-19
Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = 0


Query: 37  RWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQK 96
           RWNP+AEQ+KVL  L+R G+RTP+S QI++I+  L  YG+IE KNVFYWFQNHKARERQK
Sbjct: 92  RWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQK 151

Query: 97  RRKLSLPQQQQQQHFILPPSSNHQHFADQSK 128
           +++ +L         +LP ++N    A + K
Sbjct: 152 QKRAALLTLSTLDPSLLPATANETKEAPEKK 182

[Close]

BLAST of Lsi03G003190 vs. ExPASy TrEMBL
Match: A0A5A7UN53 (WUSCHEL-related homeobox 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002150 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.5e-92
Identity = 184/201 (91.54%), Postives = 189/201 (94.03%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCGGESGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60
           MEDGVCSRIYVKGGGGC GES GGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS
Sbjct: 1   MEDGVCSRIYVKGGGGCSGES-GGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60

Query: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQQQQHFILPPSSNHQ 120
           SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLP   QQQHFILPPSSN Q
Sbjct: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLP---QQQHFILPPSSNLQ 120

Query: 121 HFADQS---KGIM-ELEPERMMRTLQLFPLNSSIDETQGLPEDHHHQFRVNGMQYEDATA 180
           HFADQS   KGIM +LEPERMM+TLQLFPLNS+IDETQGLPED+HH +RVNG QYEDATA
Sbjct: 121 HFADQSTTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPEDNHH-YRVNGKQYEDATA 180

Query: 181 FTYKIETKMDHPPLDLRLSFL 198
           FTYKIETKMDHPPLDLRLSFL
Sbjct: 181 FTYKIETKMDHPPLDLRLSFL 196

[Close]

BLAST of Lsi03G003190 vs. ExPASy TrEMBL
Match: A0A1S3B2Z9 (WUSCHEL-related homeobox 5 OS=Cucumis melo OX=3656 GN=LOC103485558 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.5e-92
Identity = 184/201 (91.54%), Postives = 189/201 (94.03%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCGGESGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60
           MEDGVCSRIYVKGGGGC GES GGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS
Sbjct: 1   MEDGVCSRIYVKGGGGCSGES-GGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60

Query: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQQQQHFILPPSSNHQ 120
           SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLP   QQQHFILPPSSN Q
Sbjct: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLP---QQQHFILPPSSNLQ 120

Query: 121 HFADQS---KGIM-ELEPERMMRTLQLFPLNSSIDETQGLPEDHHHQFRVNGMQYEDATA 180
           HFADQS   KGIM +LEPERMM+TLQLFPLNS+IDETQGLPED+HH +RVNG QYEDATA
Sbjct: 121 HFADQSTTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPEDNHH-YRVNGKQYEDATA 180

Query: 181 FTYKIETKMDHPPLDLRLSFL 198
           FTYKIETKMDHPPLDLRLSFL
Sbjct: 181 FTYKIETKMDHPPLDLRLSFL 196

[Close]

BLAST of Lsi03G003190 vs. ExPASy TrEMBL
Match: A0A6J1FH52 (WUSCHEL-related homeobox 5-like OS=Cucurbita moschata OX=3662 GN=LOC111445643 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.4e-80
Identity = 173/218 (79.36%), Postives = 180/218 (82.57%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCGGESGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60
           MEDGVCSRIYVK GGGC GE GGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS
Sbjct: 8   MEDGVCSRIYVK-GGGCSGEGGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 67

Query: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRK--LSLPQQQQQQHF------- 120
           SDQIQKISH LSFYGKIESKNVFYWFQNHKARERQKRRK  LSL    QQQHF       
Sbjct: 68  SDQIQKISHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSLSLDHSHQQQHFLHPLHLS 127

Query: 121 ---------ILPPSSNHQHFADQS---KGIMELEPERMMRTLQLFPLNSSIDETQGLPED 180
                    I+PPS+   HFADQS   KGIMELEPERMM+TLQLFPLN SIDETQG   D
Sbjct: 128 NDHNNNNNNIIPPSN---HFADQSSTNKGIMELEPERMMKTLQLFPLN-SIDETQG--SD 187

Query: 181 HHHQFRVNGMQYEDATAFTYKIETKMDHPPLDLRLSFL 198
            +HQFRV+G Q+EDAT+FTYKIETKMDHPPLDLRLSFL
Sbjct: 188 DYHQFRVDGKQFEDATSFTYKIETKMDHPPLDLRLSFL 218

[Close]

BLAST of Lsi03G003190 vs. ExPASy TrEMBL
Match: A0A6J1JWK4 (WUSCHEL-related homeobox 5-like OS=Cucurbita maxima OX=3661 GN=LOC111489507 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.2e-79
Identity = 172/215 (80.00%), Postives = 179/215 (83.26%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCGGESGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60
           MEDGVCSRIYVK GGGCGGE GGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS
Sbjct: 1   MEDGVCSRIYVK-GGGCGGEGGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60

Query: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRK--LSLPQQQQQQHFILP--PS 120
           SDQIQKISH LSFYGKIESKNVFYWFQNHKARERQKRRK  LSL    Q QHF+ P   S
Sbjct: 61  SDQIQKISHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSLSLDHSHQHQHFLHPLHLS 120

Query: 121 SNH-----------QHFADQS---KGIMELEPERMMRTLQLFPLNSSIDETQGLPEDHHH 180
           ++H            HFADQS   KGIMELEPERMM+TLQLFPLN SIDETQG   D +H
Sbjct: 121 NDHHHNNNNIIPPTNHFADQSSPNKGIMELEPERMMKTLQLFPLN-SIDETQG--SDDYH 180

Query: 181 QFRVNGMQYEDATAFTYKIETKMDHPPLDLRLSFL 198
           QFRV+G QYE AT+FTYKIETKMDHPPLDLRLSFL
Sbjct: 181 QFRVDGKQYEGATSFTYKIETKMDHPPLDLRLSFL 211

[Close]

BLAST of Lsi03G003190 vs. ExPASy TrEMBL
Match: A0A6J1GMY2 (WUSCHEL-related homeobox 5-like OS=Cucurbita moschata OX=3662 GN=LOC111455970 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 3.1e-70
Identity = 156/210 (74.29%), Postives = 167/210 (79.52%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCGGESGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60
           M++G+ SR YVK  G  GG  GGG  GKGS SSKCGRWNPTAEQVKVLTELFRSGLRTPS
Sbjct: 7   MDEGISSRFYVKPAG--GGGDGGGVAGKGSMSSKCGRWNPTAEQVKVLTELFRSGLRTPS 66

Query: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLP--------QQQQQQHFI 120
           SDQIQKISH LSFYGKIESKNVFYWFQNHKARERQKRRK+S+           QQQQHFI
Sbjct: 67  SDQIQKISHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSISLDHTHHHHHHQQQQHFI 126

Query: 121 LPPSSNHQHFADQSK-----GIMELEPERMMRTLQLFPLNSSIDETQGLPEDHHHQFRVN 180
           LPP SN  +FAD        G MELEPERMM+TLQLFPLN SI ET+G   D+ HQFRVN
Sbjct: 127 LPPCSN--YFADDQSTTNKGGTMELEPERMMKTLQLFPLN-SIGETEG---DNDHQFRVN 186

Query: 181 GMQYEDATAFTYKIETKMDHPPLDLRLSFL 198
           G QYE+ATAFTYKI TKM+HPPLDLRLSFL
Sbjct: 187 GKQYEEATAFTYKIGTKMEHPPLDLRLSFL 208

[Close]

BLAST of Lsi03G003190 vs. NCBI nr
Match: KAE8646563.1 (hypothetical protein Csa_005730 [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 3.5e-92
Identity = 185/201 (92.04%), Postives = 189/201 (94.03%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCGGESGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60
           MEDGVCSRIYVKGGGGC GES GGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS
Sbjct: 1   MEDGVCSRIYVKGGGGCSGES-GGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60

Query: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQQQQHFILPPSSNHQ 120
           SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLP   QQQHFILPPSSN Q
Sbjct: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLP---QQQHFILPPSSNLQ 120

Query: 121 HFADQS---KGIM-ELEPERMMRTLQLFPLNSSIDETQGLPEDHHHQFRVNGMQYEDATA 180
           HFADQS   KGIM +LEPERMM+TLQLFPLNS+IDETQGLPED HHQ+RVNG QYEDATA
Sbjct: 121 HFADQSMTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPED-HHQYRVNGKQYEDATA 180

Query: 181 FTYKIETKMDHPPLDLRLSFL 198
           FTYKIETKMDHPPLDLRLSFL
Sbjct: 181 FTYKIETKMDHPPLDLRLSFL 196

[Close]

BLAST of Lsi03G003190 vs. NCBI nr
Match: XP_008441440.1 (PREDICTED: WUSCHEL-related homeobox 5 [Cucumis melo] >KAA0055065.1 WUSCHEL-related homeobox 5 [Cucumis melo var. makuwa] >TYK24420.1 WUSCHEL-related homeobox 5 [Cucumis melo var. makuwa])

HSP 1 Score: 346.7 bits (888), Expect = 1.3e-91
Identity = 184/201 (91.54%), Postives = 189/201 (94.03%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCGGESGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60
           MEDGVCSRIYVKGGGGC GES GGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS
Sbjct: 1   MEDGVCSRIYVKGGGGCSGES-GGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60

Query: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQQQQHFILPPSSNHQ 120
           SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLP   QQQHFILPPSSN Q
Sbjct: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLP---QQQHFILPPSSNLQ 120

Query: 121 HFADQS---KGIM-ELEPERMMRTLQLFPLNSSIDETQGLPEDHHHQFRVNGMQYEDATA 180
           HFADQS   KGIM +LEPERMM+TLQLFPLNS+IDETQGLPED+HH +RVNG QYEDATA
Sbjct: 121 HFADQSTTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPEDNHH-YRVNGKQYEDATA 180

Query: 181 FTYKIETKMDHPPLDLRLSFL 198
           FTYKIETKMDHPPLDLRLSFL
Sbjct: 181 FTYKIETKMDHPPLDLRLSFL 196

[Close]

BLAST of Lsi03G003190 vs. NCBI nr
Match: KAG6578442.1 (WUSCHEL-related homeobox 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 311.2 bits (796), Expect = 6.3e-81
Identity = 174/217 (80.18%), Postives = 182/217 (83.87%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCGGESGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60
           MEDGVCSRIYVK GGGCGGE GGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS
Sbjct: 8   MEDGVCSRIYVK-GGGCGGEGGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 67

Query: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRK--LSLPQQQQQQHFI------ 120
           SDQIQKISH LSFYGKIESKNVFYWFQNHKARERQKRRK  LSL   QQQQHF+      
Sbjct: 68  SDQIQKISHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSLSLDHSQQQQHFLHSLHLS 127

Query: 121 ---------LPPSSNHQHFADQS---KGIMELEPERMMRTLQLFPLNSSIDETQGLPEDH 180
                    +PPS+   HFADQS   KGIMELEPERMM+TLQLFPLN SIDETQG   D 
Sbjct: 128 NDHNNNNNNIPPSN---HFADQSSTNKGIMELEPERMMKTLQLFPLN-SIDETQG--SDD 187

Query: 181 HHQFRVNGMQYEDATAFTYKIETKMDHPPLDLRLSFL 198
           +HQFRV+G Q+EDAT+FTYKIETKMDHPPLDLRLSFL
Sbjct: 188 YHQFRVDGKQFEDATSFTYKIETKMDHPPLDLRLSFL 217

[Close]

BLAST of Lsi03G003190 vs. NCBI nr
Match: XP_022939921.1 (WUSCHEL-related homeobox 5-like [Cucurbita moschata])

HSP 1 Score: 307.4 bits (786), Expect = 9.1e-80
Identity = 173/218 (79.36%), Postives = 180/218 (82.57%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCGGESGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60
           MEDGVCSRIYVK GGGC GE GGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS
Sbjct: 8   MEDGVCSRIYVK-GGGCSGEGGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 67

Query: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRK--LSLPQQQQQQHF------- 120
           SDQIQKISH LSFYGKIESKNVFYWFQNHKARERQKRRK  LSL    QQQHF       
Sbjct: 68  SDQIQKISHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSLSLDHSHQQQHFLHPLHLS 127

Query: 121 ---------ILPPSSNHQHFADQS---KGIMELEPERMMRTLQLFPLNSSIDETQGLPED 180
                    I+PPS+   HFADQS   KGIMELEPERMM+TLQLFPLN SIDETQG   D
Sbjct: 128 NDHNNNNNNIIPPSN---HFADQSSTNKGIMELEPERMMKTLQLFPLN-SIDETQG--SD 187

Query: 181 HHHQFRVNGMQYEDATAFTYKIETKMDHPPLDLRLSFL 198
            +HQFRV+G Q+EDAT+FTYKIETKMDHPPLDLRLSFL
Sbjct: 188 DYHQFRVDGKQFEDATSFTYKIETKMDHPPLDLRLSFL 218

[Close]

BLAST of Lsi03G003190 vs. NCBI nr
Match: XP_023549507.1 (WUSCHEL-related homeobox 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.0 bits (785), Expect = 1.2e-79
Identity = 173/217 (79.72%), Postives = 180/217 (82.95%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCGGESGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60
           MEDGVCSRIYVK GGGCGGE GGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS
Sbjct: 8   MEDGVCSRIYVK-GGGCGGEGGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 67

Query: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRK--LSLPQQQQQQHFILP--PS 120
           SDQIQKISH LSFYGKIESKNVFYWFQNHKARERQKRRK  LSL    QQQHF+ P   S
Sbjct: 68  SDQIQKISHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSLSLDHSHQQQHFLHPLHLS 127

Query: 121 SNH-------------QHFADQS---KGIMELEPERMMRTLQLFPLNSSIDETQGLPEDH 180
           ++H              HFADQS   KGIMELEPERMM+TLQLFPLN SIDETQG   D 
Sbjct: 128 NDHNNNNNNNNIIPPTNHFADQSSTNKGIMELEPERMMKTLQLFPLN-SIDETQG--SDD 187

Query: 181 HHQFRVNGMQYEDATAFTYKIETKMDHPPLDLRLSFL 198
           +HQFRV+G  YEDAT+FTYKIETKMDHPPLDLRLSFL
Sbjct: 188 YHQFRVDGKHYEDATSFTYKIETKMDHPPLDLRLSFL 220

[Close]

BLAST of Lsi03G003190 vs. TAIR 10
Match: AT3G11260.1 (WUSCHEL related homeobox 5 )

HSP 1 Score: 148.3 bits (373), Expect = 6.6e-36
Identity = 95/199 (47.74%), Postives = 125/199 (62.81%), Query Frame = 0


Query: 11  VKGGGGCGGESGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHH 70
           VKG    G  +GG G       +KCGRWNPT EQ+K+LT+LFR+GLRTP++DQIQKIS  
Sbjct: 5   VKGRSLRGNNNGGTG-------TKCGRWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTE 64

Query: 71  LSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQQQQHFILPPSSNHQHFADQSKGIM 130
           LSFYGKIESKNVFYWFQNHKARERQKRRK+S+               +H H    ++ + 
Sbjct: 65  LSFYGKIESKNVFYWFQNHKARERQKRRKISI-------------DFDHHHHQPSTRDVF 124

Query: 131 EL------EPERMMRTLQLFPLNSSIDETQGLPEDH---HHQFRVNGMQYEDATAFT--Y 190
           E+      E E+++ TLQLFP+NS  D    + +     ++Q+R   ++    T+F+   
Sbjct: 125 EISEEDCQEEEKVIETLQLFPVNSFEDSNSKVDKMRARGNNQYR-EYIRETTTTSFSPYS 182

Query: 191 KIETKMDH-PPLDLRLSFL 198
               +M+H PPLDLRLSFL
Sbjct: 185 SCGAEMEHPPPLDLRLSFL 182

[Close]

BLAST of Lsi03G003190 vs. TAIR 10
Match: AT5G05770.1 (WUSCHEL related homeobox 7 )

HSP 1 Score: 121.3 bits (303), Expect = 8.6e-28
Identity = 67/99 (67.68%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 11  VKGGGGCGGESGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHH 70
           +K  G C   +GGGG G     +KCGRWNPT EQVK+LT+LF++GLRTPS+DQIQKIS  
Sbjct: 8   IKARGLCNNNNGGGGTG-----AKCGRWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISME 67

Query: 71  LSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQQQQ 110
           LSFYGKIESKNVFYWFQNHKARERQK RK+S  +   +Q
Sbjct: 68  LSFYGKIESKNVFYWFQNHKARERQKCRKISTVKFDHRQ 101

[Close]

BLAST of Lsi03G003190 vs. TAIR 10
Match: AT2G28610.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 105.1 bits (261), Expect = 6.4e-23
Identity = 58/141 (41.13%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 37  RWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQK 96
           RW PT EQ+ +L E++RSG+RTP++ QIQ+I+ HL+FYG+IE KNVFYWFQNHKAR+RQK
Sbjct: 8   RWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQK 67

Query: 97  RRKLSLPQQQQQQHFILPPSSNHQHFADQSKGIMELEPERMMRTLQLFPLNSSIDETQGL 156
            RK    Q  QQQH +                + +++P+ +   +   P+N +I +    
Sbjct: 68  LRKKLAKQLHQQQHQL-------------QLQLQQIKPKPISSMISQ-PVNKNIIDHHNP 127

Query: 157 PEDHHHQFRVNGMQYEDATAF 178
              HHH    N  +  D  +F
Sbjct: 128 YHHHHHNHHHNHHRPYDHMSF 134

[Close]

BLAST of Lsi03G003190 vs. TAIR 10
Match: AT3G18010.1 (WUSCHEL related homeobox 1 )

HSP 1 Score: 98.2 bits (243), Expect = 7.8e-21
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 37  RWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQK 96
           RWNPT +Q++VL EL+R G RTPS+D IQ+I+  L  YGKIE KNVFYWFQNHKARERQK
Sbjct: 76  RWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQK 135

Query: 97  RRK 100
           RR+
Sbjct: 136 RRR 138

[Close]

BLAST of Lsi03G003190 vs. TAIR 10
Match: AT2G01500.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 92.4 bits (228), Expect = 4.3e-19
Identity = 50/91 (54.95%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 37  RWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQK 96
           RWNPT EQ+  L EL+RSG RTP+++QIQ+I+  L  YG+IE KNVFYWFQNHKARER K
Sbjct: 61  RWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQNHKARERLK 120

Query: 97  RRKLSLPQQQQQQHFILPPSSNHQHFADQSK 128
           RR+        + H  +  SS+  H  DQ+K
Sbjct: 121 RRRRE-GGAIIKPHKDVKDSSSGGHRVDQTK 150

The following BLAST results are available for this feature:

BLAST of Lsi03G003190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H1D2	9.2e-35	47.74	WUSCHEL-related homeobox 5 OS=Arabidopsis thaliana OX=3702 GN=WOX5 PE=2 SV=1	[more]
Q9FFK0	1.2e-26	67.68	WUSCHEL-related homeobox 7 OS=Arabidopsis thaliana OX=3702 GN=WOX7 PE=2 SV=1	[more]
Q8W0F1	1.6e-26	43.75	WUSCHEL-related homeobox 9 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX9 PE=2...	[more]
Q9SIB4	9.0e-22	41.13	WUSCHEL-related homeobox 3 OS=Arabidopsis thaliana OX=3702 GN=WOX3 PE=1 SV=1	[more]
Q25AM2	1.1e-19	52.75	WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. indica OX=39946 GN=WOX4 PE=3 S...	[more]

BLAST of Lsi03G003190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UN53	6.5e-92	91.54	WUSCHEL-related homeobox 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3B2Z9	6.5e-92	91.54	WUSCHEL-related homeobox 5 OS=Cucumis melo OX=3656 GN=LOC103485558 PE=3 SV=1	[more]
A0A6J1FH52	4.4e-80	79.36	WUSCHEL-related homeobox 5-like OS=Cucurbita moschata OX=3662 GN=LOC111445643 PE...	[more]
A0A6J1JWK4	2.2e-79	80.00	WUSCHEL-related homeobox 5-like OS=Cucurbita maxima OX=3661 GN=LOC111489507 PE=3...	[more]
A0A6J1GMY2	3.1e-70	74.29	WUSCHEL-related homeobox 5-like OS=Cucurbita moschata OX=3662 GN=LOC111455970 PE...	[more]

BLAST of Lsi03G003190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646563.1	3.5e-92	92.04	hypothetical protein Csa_005730 [Cucumis sativus]	[more]
XP_008441440.1	1.3e-91	91.54	PREDICTED: WUSCHEL-related homeobox 5 [Cucumis melo] >KAA0055065.1 WUSCHEL-relat...	[more]
KAG6578442.1	6.3e-81	80.18	WUSCHEL-related homeobox 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022939921.1	9.1e-80	79.36	WUSCHEL-related homeobox 5-like [Cucurbita moschata]	[more]
XP_023549507.1	1.2e-79	79.72	WUSCHEL-related homeobox 5-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi03G003190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11260.1	6.6e-36	47.74	WUSCHEL related homeobox 5	[more]
AT5G05770.1	8.6e-28	67.68	WUSCHEL related homeobox 7	[more]
AT2G28610.1	6.4e-23	41.13	Homeodomain-like superfamily protein	[more]
AT3G18010.1	7.8e-21	71.43	WUSCHEL related homeobox 1	[more]
AT2G01500.1	4.3e-19	54.95	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 33..100 e-value: 3.4E-4 score: 28.6
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 35..95 e-value: 2.8E-18 score: 65.5
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 31..96 score: 11.158985
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 37..97 e-value: 2.39661E-4 score: 36.0673
None	No IPR available	GENE3D	1.10.10.60		coord: 34..102 e-value: 7.1E-10 score: 40.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..36
None	No IPR available	PANTHER	PTHR45940:SF3	WUSCHEL-RELATED HOMEOBOX 7	coord: 21..183
IPR044555	Protein WUSCHEL-like	PANTHER	PTHR45940	WUSCHEL-RELATED HOMEOBOX 1-RELATED	coord: 21..183
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 32..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G003190.1	Lsi03G003190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0099402	plant organ development
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity