Lsi03G002800 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G002800
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Transcription factor bHLH61 isoform 1
Location	chr03: 3418724 .. 3420148 (-)
RNA-Seq Expression	Lsi03G002800
Synteny	Lsi03G002800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGAAGCTAGCAAACAGAAAAGATCATATAGATTTGAGGGCTCATCATACCCTTATAAAACACACCTCTAAGTTTTTTTCTTTTTTGCAGAGATATTACAAAAGAAAAAAAAAAAAAAAAAAAAAAAAGATATAAAGAGAAAGAAAGAAAAAGAGTTGAATCCATGGTTTCTAGAGAGCACAAGAACGCAGCTCTGCATGAGAAGCTTCAATTACTTCGCTCTATTACCAACTCTCATGCTGTAAATTCTCCTCTCTAATTTTTCTTAATTTTCTTCTTCTTTTTTTTAATTTTATTTTTAATAATCCCCTCTGCCTTTTGCATTCTCAATTCAAATCAATTTTCTTCTAATTTTTTTTGTGTGTAAACTATCATTTTGGAATTTGATATCAATTGAGAATTGGGATGATTAAAGAATTTTGAAATATCATTAAATAAGAAAAAAGGGAAGAACCAATGATTTTCTAACACAAAAGATTTGGTTTTTTGTGTGTGTGTAGCAGCTAAACAAGGCCTCGATTATAGTGGATGCATCAAAATATATCGAGGAGCTAAAACAGAAAGTAGAAAGATTGAATCAAGATATATCAACCGTTCAAAATTCAATCCACCAAAATCCAATTTCTCATCATTCTCCCATGGTATATAATTTTTATTTCAATCAATAATAACAATAATAAAAATTTCTAAATTAATCAACAATTTTCTTAGCTTTTTCCATTTTTTTTTTTTTTAGAGAGAAAAAGAAAAAAAAAAACTTACCCATTTTGATTTGTGTGTTATAGCAGGTTACAGTGGAAAGGCTAGTAAAGGGATTTTCTATAAATGTATTTTCAGAAAAGAGTTGTCAAGGGCTTCTTGTCTCCATATTAGAAGTGTTTGAAGAGCTGGGGCTTAATGTCATTGAAGCTAGGGTTTCCTGTACTGATAGTTTCCAATTACAAGCTATTGGAGAAGTAAGATATTCCAATCACTCTTCTTTCTATATATATATTATCATCATTATTCATCAATTTTAAATATATCTTTTTTATTAATTAATTCTCTCTCACAACCTTATACTACTTATCATCATTAATTCCTTCATGCATAATTAAGTCAAATCAATCATTACTTTTAACAAAAGAATATTTACACTTCAAATTAAATGTTGGGTTTTATTTATATAATTGAAACATTAAATTTAATTAAATGGGTTTTTTTTTTGTTTGAAAAATTTTGTAGATTGAAGAAGAAGGAGAAGAAGCCATTGATGCTCAAGCTGTGAAAGAAGCAGTAGTTCAAGCTATAAAGAGCTGGAGCCAAAGCGGTGAACAAGATTAATAATAATCAACTCTCTAGAAGGAGAATTATTATTATTCAAAAAAAAAAAATCCTTAATTTCTCCAACTTATTCCCATCGCGGCGTTTCCTCCCCCCCCCCC

mRNA sequence

TGGGAAGCTAGCAAACAGAAAAGATCATATAGATTTGAGGGCTCATCATACCCTTATAAAACACACCTCTAAGTTTTTTTCTTTTTTGCAGAGATATTACAAAAGAAAAAAAAAAAAAAAAAAAAAAAAGATATAAAGAGAAAGAAAGAAAAAGAGTTGAATCCATGGTTTCTAGAGAGCACAAGAACGCAGCTCTGCATGAGAAGCTTCAATTACTTCGCTCTATTACCAACTCTCATGCTCTAAACAAGGCCTCGATTATAGTGGATGCATCAAAATATATCGAGGAGCTAAAACAGAAAGTAGAAAGATTGAATCAAGATATATCAACCGTTCAAAATTCAATCCACCAAAATCCAATTTCTCATCATTCTCCCATGGTTACAGTGGAAAGGCTAGTAAAGGGATTTTCTATAAATGTATTTTCAGAAAAGAGTTGTCAAGGGCTTCTTGTCTCCATATTAGAAGTGTTTGAAGAGCTGGGGCTTAATGTCATTGAAGCTAGGGTTTCCTGTACTGATAGTTTCCAATTACAAGCTATTGGAGAAATTGAAGAAGAAGGAGAAGAAGCCATTGATGCTCAAGCTGTGAAAGAAGCAGTAGTTCAAGCTATAAAGAGCTGGAGCCAAAGCGGTGAACAAGATTAATAATAATCAACTCTCTAGAAGGAGAATTATTATTATTCAAAAAAAAAAAATCCTTAATTTCTCCAACTTATTCCCATCGCGGCGTTTCCTCCCCCCCCCCC

Coding sequence (CDS)

ATGGTTTCTAGAGAGCACAAGAACGCAGCTCTGCATGAGAAGCTTCAATTACTTCGCTCTATTACCAACTCTCATGCTCTAAACAAGGCCTCGATTATAGTGGATGCATCAAAATATATCGAGGAGCTAAAACAGAAAGTAGAAAGATTGAATCAAGATATATCAACCGTTCAAAATTCAATCCACCAAAATCCAATTTCTCATCATTCTCCCATGGTTACAGTGGAAAGGCTAGTAAAGGGATTTTCTATAAATGTATTTTCAGAAAAGAGTTGTCAAGGGCTTCTTGTCTCCATATTAGAAGTGTTTGAAGAGCTGGGGCTTAATGTCATTGAAGCTAGGGTTTCCTGTACTGATAGTTTCCAATTACAAGCTATTGGAGAAATTGAAGAAGAAGGAGAAGAAGCCATTGATGCTCAAGCTGTGAAAGAAGCAGTAGTTCAAGCTATAAAGAGCTGGAGCCAAAGCGGTGAACAAGATTAA

Protein sequence

MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD

Homology

[Close]

BLAST of Lsi03G002800 vs. ExPASy Swiss-Prot
Match: Q9LXA9 (Transcription factor bHLH61 OS=Arabidopsis thaliana OX=3702 GN=BHLH61 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.5e-06
Identity = 41/154 (26.62%), Postives = 80/154 (51.95%), Query Frame = 0


Query: 1   MVSREHKNAALHEKLQLLRSIT-NSHALNKASIIVDASKYIEELKQKVERLNQDISTVQN 60
           +++   +   L+++L LLRSI      +++ SI+ DA  Y++EL  K+ +L +D   + +
Sbjct: 153 LMAERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLDKINKLQEDEQELGS 212

Query: 61  SIHQNPISHHSPMV--TVERLVKGFSINVFSEKSC---QGLLVSILEVFEELGLNVIEAR 120
           + H + +  +  MV  +++  V    +N   +  C    GL+VS +   E LGL + +  
Sbjct: 213 NSHLSTLITNESMVRNSLKFEVDQREVNTHIDICCPTKPGLVVSTVSTLETLGLEIEQCV 272

Query: 121 VSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQ 149
           +SC   F LQA      E    + ++A K+A+++
Sbjct: 273 ISCFSDFSLQASCFEVGEQRYMVTSEATKQALIR 306

[Close]

BLAST of Lsi03G002800 vs. ExPASy Swiss-Prot
Match: Q9LSL1 (Transcription factor bHLH93 OS=Arabidopsis thaliana OX=3702 GN=BHLH93 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.6e-06
Identity = 41/162 (25.31%), Postives = 78/162 (48.15%), Query Frame = 0


Query: 1   MVSREHKNAALHEKLQLLRSIT-NSHALNKASIIVDASKYIEELKQKVERL---NQDIST 60
           +++   +   L+++L +LRSI      +++ SI+ DA  Y++EL  K+ +L    Q++  
Sbjct: 180 LMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKLQDEEQELGN 239

Query: 61  VQNSIH------------QNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFE 120
             NS H              P+  +SP   ++R  +   +++       GLL+S +   E
Sbjct: 240 SNNSHHSKLFGDLKDLNANEPLVRNSPKFEIDRRDEDTRVDICCSPK-PGLLLSTVNTLE 299

Query: 121 ELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAV 147
            LGL + +  +SC   F LQA      E  + I ++ +K+A+
Sbjct: 300 TLGLEIEQCVISCFSDFSLQASCSEGAEQRDFITSEDIKQAL 340

[Close]

BLAST of Lsi03G002800 vs. ExPASy TrEMBL
Match: A0A6J1JTS8 (uncharacterized protein LOC111487778 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487778 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.5e-65
Identity = 140/160 (87.50%), Postives = 147/160 (91.88%), Query Frame = 0


Query: 1   MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNS 60
           MVSREHK AALHEKLQLLRSITNSHALNK SIIVDASKYIEELKQKVERLNQDI+TVQNS
Sbjct: 1   MVSREHKKAALHEKLQLLRSITNSHALNKGSIIVDASKYIEELKQKVERLNQDIATVQNS 60

Query: 61  IHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTDS 120
           IH N      PMVTVE LVKGFSINVFSEKSCQGLLVSILE FEELGLNV+EARVSCTD+
Sbjct: 61  IHPN-----HPMVTVEALVKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDT 120

Query: 121 FQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD 161
           FQLQA  EIEE+GEEA+DAQAVKEAVV+AIKSWSQ+GEQD
Sbjct: 121 FQLQAFAEIEEQGEEAMDAQAVKEAVVEAIKSWSQNGEQD 155

[Close]

BLAST of Lsi03G002800 vs. ExPASy TrEMBL
Match: A0A6J1HJR0 (uncharacterized protein LOC111464709 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464709 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.5e-65
Identity = 140/160 (87.50%), Postives = 147/160 (91.88%), Query Frame = 0


Query: 1   MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNS 60
           MVSREHK AALHEKLQLLRSITNSHALNK SIIVDASKYIEELKQKVERLNQDI+TVQNS
Sbjct: 1   MVSREHKKAALHEKLQLLRSITNSHALNKGSIIVDASKYIEELKQKVERLNQDIATVQNS 60

Query: 61  IHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTDS 120
           IH N      PMVTVE LVKGFSINVFSEKSCQGLLVSILE FEELGLNV+EARVSCTD+
Sbjct: 61  IHPN-----HPMVTVEALVKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDT 120

Query: 121 FQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD 161
           FQLQA  EIEE+GEEA+DAQAVKEAVV+AIKSWSQ+GEQD
Sbjct: 121 FQLQAFAEIEEQGEEAMDAQAVKEAVVEAIKSWSQNGEQD 155

[Close]

BLAST of Lsi03G002800 vs. ExPASy TrEMBL
Match: A0A6J1JV46 (uncharacterized protein LOC111487778 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487778 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.5e-65
Identity = 139/160 (86.88%), Postives = 146/160 (91.25%), Query Frame = 0


Query: 1   MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNS 60
           MVSREHK AALHEKLQLLRSITNSHALNK SIIVDASKYIEELKQKVERLNQDI+TVQNS
Sbjct: 1   MVSREHKKAALHEKLQLLRSITNSHALNKGSIIVDASKYIEELKQKVERLNQDIATVQNS 60

Query: 61  IHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTDS 120
           IH N    H   VTVE LVKGFSINVFSEKSCQGLLVSILE FEELGLNV+EARVSCTD+
Sbjct: 61  IHPN----HPMQVTVEALVKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDT 120

Query: 121 FQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD 161
           FQLQA  EIEE+GEEA+DAQAVKEAVV+AIKSWSQ+GEQD
Sbjct: 121 FQLQAFAEIEEQGEEAMDAQAVKEAVVEAIKSWSQNGEQD 156

[Close]

BLAST of Lsi03G002800 vs. ExPASy TrEMBL
Match: A0A6J1JUG1 (uncharacterized protein LOC111489817 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111489817 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.5e-65
Identity = 142/160 (88.75%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 1   MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNS 60
           MVSREH NAALH  LQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQ S
Sbjct: 1   MVSREHNNAALHHNLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQTS 60

Query: 61  IHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTDS 120
           IH        PMVTVE L KGFSINVFSEKSCQGLLVSILE FEELGLNV+EARVSCTDS
Sbjct: 61  IH--------PMVTVESLAKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDS 120

Query: 121 FQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD 161
           FQLQAI EIEEEGEEAIDAQAVKEAVVQAIK WSQSGEQD
Sbjct: 121 FQLQAIAEIEEEGEEAIDAQAVKEAVVQAIKIWSQSGEQD 152

[Close]

BLAST of Lsi03G002800 vs. ExPASy TrEMBL
Match: A0A6J1HIH6 (uncharacterized protein LOC111464709 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464709 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.5e-65
Identity = 139/160 (86.88%), Postives = 146/160 (91.25%), Query Frame = 0


Query: 1   MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNS 60
           MVSREHK AALHEKLQLLRSITNSHALNK SIIVDASKYIEELKQKVERLNQDI+TVQNS
Sbjct: 1   MVSREHKKAALHEKLQLLRSITNSHALNKGSIIVDASKYIEELKQKVERLNQDIATVQNS 60

Query: 61  IHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTDS 120
           IH N    H   VTVE LVKGFSINVFSEKSCQGLLVSILE FEELGLNV+EARVSCTD+
Sbjct: 61  IHPN----HPMQVTVEALVKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDT 120

Query: 121 FQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD 161
           FQLQA  EIEE+GEEA+DAQAVKEAVV+AIKSWSQ+GEQD
Sbjct: 121 FQLQAFAEIEEQGEEAMDAQAVKEAVVEAIKSWSQNGEQD 156

[Close]

BLAST of Lsi03G002800 vs. NCBI nr
Match: XP_038884499.1 (uncharacterized protein LOC120075304 isoform X4 [Benincasa hispida])

HSP 1 Score: 281.2 bits (718), Expect = 5.6e-72
Identity = 152/161 (94.41%), Postives = 155/161 (96.27%), Query Frame = 0


Query: 1   MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNS 60
           MVSREHK A LHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNS
Sbjct: 1   MVSREHKKAVLHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNS 60

Query: 61  IHQNPISH-HSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTD 120
           IH NP+SH +SPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTD
Sbjct: 61  IHPNPLSHQYSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTD 120

Query: 121 SFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD 161
           +FQLQAI EIEEEGEEAIDAQAVKEAVVQAIKSW QSGEQD
Sbjct: 121 TFQLQAIAEIEEEGEEAIDAQAVKEAVVQAIKSWGQSGEQD 161

[Close]

BLAST of Lsi03G002800 vs. NCBI nr
Match: XP_038884498.1 (uncharacterized protein LOC120075304 isoform X3 [Benincasa hispida])

HSP 1 Score: 276.6 bits (706), Expect = 1.4e-70
Identity = 152/162 (93.83%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MVSREHKNAALHEKLQLLRSITNSHA-LNKASIIVDASKYIEELKQKVERLNQDISTVQN 60
           MVSREHK A LHEKLQLLRSITNSHA LNKASIIVDASKYIEELKQKVERLNQDISTVQN
Sbjct: 1   MVSREHKKAVLHEKLQLLRSITNSHAQLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60

Query: 61  SIHQNPISH-HSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCT 120
           SIH NP+SH +SPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCT
Sbjct: 61  SIHPNPLSHQYSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCT 120

Query: 121 DSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD 161
           D+FQLQAI EIEEEGEEAIDAQAVKEAVVQAIKSW QSGEQD
Sbjct: 121 DTFQLQAIAEIEEEGEEAIDAQAVKEAVVQAIKSWGQSGEQD 162

[Close]

BLAST of Lsi03G002800 vs. NCBI nr
Match: XP_038884497.1 (uncharacterized protein LOC120075304 isoform X2 [Benincasa hispida])

HSP 1 Score: 276.6 bits (706), Expect = 1.4e-70
Identity = 152/162 (93.83%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNS 60
           MVSREHK A LHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNS
Sbjct: 1   MVSREHKKAVLHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNS 60

Query: 61  IHQNPISH-HSPM-VTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCT 120
           IH NP+SH +SPM VTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCT
Sbjct: 61  IHPNPLSHQYSPMQVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCT 120

Query: 121 DSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD 161
           D+FQLQAI EIEEEGEEAIDAQAVKEAVVQAIKSW QSGEQD
Sbjct: 121 DTFQLQAIAEIEEEGEEAIDAQAVKEAVVQAIKSWGQSGEQD 162

[Close]

BLAST of Lsi03G002800 vs. NCBI nr
Match: XP_038884496.1 (uncharacterized protein LOC120075304 isoform X1 [Benincasa hispida])

HSP 1 Score: 271.9 bits (694), Expect = 3.4e-69
Identity = 152/163 (93.25%), Postives = 155/163 (95.09%), Query Frame = 0


Query: 1   MVSREHKNAALHEKLQLLRSITNSHA-LNKASIIVDASKYIEELKQKVERLNQDISTVQN 60
           MVSREHK A LHEKLQLLRSITNSHA LNKASIIVDASKYIEELKQKVERLNQDISTVQN
Sbjct: 1   MVSREHKKAVLHEKLQLLRSITNSHAQLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60

Query: 61  SIHQNPISH-HSPM-VTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSC 120
           SIH NP+SH +SPM VTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSC
Sbjct: 61  SIHPNPLSHQYSPMQVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSC 120

Query: 121 TDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD 161
           TD+FQLQAI EIEEEGEEAIDAQAVKEAVVQAIKSW QSGEQD
Sbjct: 121 TDTFQLQAIAEIEEEGEEAIDAQAVKEAVVQAIKSWGQSGEQD 163

[Close]

BLAST of Lsi03G002800 vs. NCBI nr
Match: XP_004138402.1 (uncharacterized protein LOC101218918 isoform X2 [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 1.0e-65
Identity = 145/162 (89.51%), Postives = 152/162 (93.83%), Query Frame = 0


Query: 1   MVSREHKN-AALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQN 60
           MVSREHK  AALH+ LQLLRSITNSH+LNKASIIVDASKYIEELKQKVERLNQDISTVQN
Sbjct: 1   MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60

Query: 61  SIHQNPISH-HSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCT 120
           S   NP+SH +SPMVTVER+VKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCT
Sbjct: 61  S---NPLSHQYSPMVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCT 120

Query: 121 DSFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQSGEQD 161
            +FQLQAIGEIEEEGEE IDAQ VKEAVVQAIKSWSQ+GEQD
Sbjct: 121 HTFQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQNGEQD 159

[Close]

BLAST of Lsi03G002800 vs. TAIR 10
Match: AT2G40435.1 (BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 173.3 bits (438), Expect = 1.5e-43
Identity = 97/155 (62.58%), Postives = 117/155 (75.48%), Query Frame = 0


Query: 1   MVSREHKNAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNS 60
           MVSRE K  +L EK QLLRSITNSHA N  SII+DASKYI++LKQKVER NQD +  Q+S
Sbjct: 1   MVSREQKRGSLQEKFQLLRSITNSHAENDTSIIMDASKYIQKLKQKVERFNQDPTAEQSS 60

Query: 61  IHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTDS 120
               P    +PMVTVE L KGF INVFS K+  G+LVS+LE FE++GLNV+EAR SCTDS
Sbjct: 61  --SEPTDPKTPMVTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIGLNVLEARASCTDS 120

Query: 121 FQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQ 156
           F L A+G +E E  E +DA+AVK+AV  AI+SW +
Sbjct: 121 FSLHAMG-LENEDGENMDAEAVKQAVTDAIRSWGE 152

[Close]

BLAST of Lsi03G002800 vs. TAIR 10
Match: AT3G56220.1 (transcription regulators )

HSP 1 Score: 157.9 bits (398), Expect = 6.7e-39
Identity = 90/157 (57.32%), Postives = 119/157 (75.80%), Query Frame = 0


Query: 1   MVSREHK-NAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQN 60
           MVSREHK  ++L EK  LLRSIT+SHA ++ SIIVDASKYI++LKQKVE++N + +T + 
Sbjct: 1   MVSREHKRGSSLREKFHLLRSITDSHAESETSIIVDASKYIKKLKQKVEKIN-NATTSEQ 60

Query: 61  SIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTD 120
           S  ++  S  +PMVTVE L KGF I V S K+  G+LV +LE FE+LGL+V+EARVSCTD
Sbjct: 61  SFRES--SDPNPMVTVETLEKGFMIKVMSRKNEAGMLVCVLETFEDLGLDVVEARVSCTD 120

Query: 121 SFQLQAIGEIEEEGEEAIDAQAVKEAVVQAIKSWSQS 157
           +F L AIG    +  + IDA+AVK+AV +AI++WS S
Sbjct: 121 TFSLHAIGSSNNDDGDCIDAEAVKQAVAEAIRTWSDS 154

[Close]

BLAST of Lsi03G002800 vs. TAIR 10
Match: AT1G29270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 98 Blast hits to 98 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 7.7e-11
Identity = 44/128 (34.38%), Postives = 76/128 (59.38%), Query Frame = 0


Query: 1   MVSREHKNAALHEKLQLLRSITN-SHALNKASIIV-DASKYIEELKQKVERLNQDISTVQ 60
           MV+ E K  A   K   L+++T+   ++++ S+++ +A  YI  LK ++E L ++   ++
Sbjct: 1   MVASEQKKRASQGKPHFLKNLTHFKFSIHEQSMVIREALLYIAMLKLEIEALQREYEDLK 60

Query: 61  NSIHQNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCT 120
             I +    H    V VE++ + F + + S +  +  LV+ILE FEE+GLNV +AR SC 
Sbjct: 61  --ITKKESLHQFQEVKVEKIGEMFQVKIKSPRG-ENNLVNILEAFEEMGLNVAQARASCL 120

Query: 121 DSFQLQAI 127
           DSF ++AI
Sbjct: 121 DSFAMEAI 125

[Close]

BLAST of Lsi03G002800 vs. TAIR 10
Match: AT5G10570.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-07
Identity = 41/154 (26.62%), Postives = 80/154 (51.95%), Query Frame = 0


Query: 1   MVSREHKNAALHEKLQLLRSIT-NSHALNKASIIVDASKYIEELKQKVERLNQDISTVQN 60
           +++   +   L+++L LLRSI      +++ SI+ DA  Y++EL  K+ +L +D   + +
Sbjct: 153 LMAERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLDKINKLQEDEQELGS 212

Query: 61  SIHQNPISHHSPMV--TVERLVKGFSINVFSEKSC---QGLLVSILEVFEELGLNVIEAR 120
           + H + +  +  MV  +++  V    +N   +  C    GL+VS +   E LGL + +  
Sbjct: 213 NSHLSTLITNESMVRNSLKFEVDQREVNTHIDICCPTKPGLVVSTVSTLETLGLEIEQCV 272

Query: 121 VSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAVVQ 149
           +SC   F LQA      E    + ++A K+A+++
Sbjct: 273 ISCFSDFSLQASCFEVGEQRYMVTSEATKQALIR 306

[Close]

BLAST of Lsi03G002800 vs. TAIR 10
Match: AT5G65640.1 (beta HLH protein 93 )

HSP 1 Score: 52.4 bits (124), Expect = 4.0e-07
Identity = 41/162 (25.31%), Postives = 78/162 (48.15%), Query Frame = 0


Query: 1   MVSREHKNAALHEKLQLLRSIT-NSHALNKASIIVDASKYIEELKQKVERL---NQDIST 60
           +++   +   L+++L +LRSI      +++ SI+ DA  Y++EL  K+ +L    Q++  
Sbjct: 180 LMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKLQDEEQELGN 239

Query: 61  VQNSIH------------QNPISHHSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFE 120
             NS H              P+  +SP   ++R  +   +++       GLL+S +   E
Sbjct: 240 SNNSHHSKLFGDLKDLNANEPLVRNSPKFEIDRRDEDTRVDICCSPK-PGLLLSTVNTLE 299

Query: 121 ELGLNVIEARVSCTDSFQLQAIGEIEEEGEEAIDAQAVKEAV 147
            LGL + +  +SC   F LQA      E  + I ++ +K+A+
Sbjct: 300 TLGLEIEQCVISCFSDFSLQASCSEGAEQRDFITSEDIKQAL 340

The following BLAST results are available for this feature:

BLAST of Lsi03G002800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXA9	2.5e-06	26.62	Transcription factor bHLH61 OS=Arabidopsis thaliana OX=3702 GN=BHLH61 PE=2 SV=1	[more]
Q9LSL1	5.6e-06	25.31	Transcription factor bHLH93 OS=Arabidopsis thaliana OX=3702 GN=BHLH93 PE=1 SV=1	[more]

BLAST of Lsi03G002800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTS8	1.5e-65	87.50	uncharacterized protein LOC111487778 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HJR0	1.5e-65	87.50	uncharacterized protein LOC111464709 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JV46	5.5e-65	86.88	uncharacterized protein LOC111487778 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JUG1	5.5e-65	88.75	uncharacterized protein LOC111489817 isoform X4 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HIH6	5.5e-65	86.88	uncharacterized protein LOC111464709 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Lsi03G002800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884499.1	5.6e-72	94.41	uncharacterized protein LOC120075304 isoform X4 [Benincasa hispida]	[more]
XP_038884498.1	1.4e-70	93.83	uncharacterized protein LOC120075304 isoform X3 [Benincasa hispida]	[more]
XP_038884497.1	1.4e-70	93.83	uncharacterized protein LOC120075304 isoform X2 [Benincasa hispida]	[more]
XP_038884496.1	3.4e-69	93.25	uncharacterized protein LOC120075304 isoform X1 [Benincasa hispida]	[more]
XP_004138402.1	1.0e-65	89.51	uncharacterized protein LOC101218918 isoform X2 [Cucumis sativus]	[more]

BLAST of Lsi03G002800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40435.1	1.5e-43	62.58	BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G5...	[more]
AT3G56220.1	6.7e-39	57.32	transcription regulators	[more]
AT1G29270.1	7.7e-11	34.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G10570.1	1.8e-07	26.62	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G65640.1	4.0e-07	25.31	beta HLH protein 93	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 33..60
None	No IPR available	PANTHER	PTHR31945:SF5	TRANSCRIPTION FACTOR SCREAM-LIKE PROTEIN	coord: 1..158
None	No IPR available	PANTHER	PTHR31945	TRANSCRIPTION FACTOR SCREAM2-RELATED	coord: 1..158
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 3..68 e-value: 2.8E-5 score: 26.2
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 11..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G002800.1	Lsi03G002800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding