Lsi03G002740 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G002740
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Histone H4
Location	chr03: 3369826 .. 3373123 (-)
RNA-Seq Expression	Lsi03G002740
Synteny	Lsi03G002740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGGCCGCGGAAAGGGAGGCAAGGGTTTGGGAAAAGGAGGAGCAAAGCGTCACAGGAAGGTCTTAAGAGATAACATTCAAGGCATCACAAAGCCTGCAATTCGCCGTTTGGCTCGTCGTGGAGGTGTTAAGCGAATCAGCGGTTTGATTTATGAAGAAACCAGAGGCGTTTTGAAGATCTTTCTTGAGAATGTGATTCGCGATGCTGTGACCTACACAGAGCACGCCAGGAGAAAGACGGTGACCGCCATGGATGTGGTTTATGCCTTGAAAAGGCAGGGAAGGACTTTGTACGGTTTCGGAGGTTAGGTTATAGATTAATCGCATGAAGGATTGTAGATCTTGCCTTTAGATCTGGTTTCTTTCTTAGCGTCGGTAATTTTTTGTTCTCTTTTTTTTTTTAGGAGTTTCTGTAACCTAGACTCTGTTTATTCAGAAATTGAAATATTACTTGGTTGAAGAATTATGAAAACCACTTTAGGTTGTTCTACACTAATTATACCAACTTCTGGCAACTTATAACAACTAATATATGGTACTGTGTGAACACGAATCCGCATTGAACTAAACATTCCCGGTTTACGAGTTGAAAATTTCTGATCGATCAATTTTTATTTACGTTTAGTTCATATTTAGGATCTATAGCCATGGTGTCAAAGGCGGTGAACTGCACTGTTTATGATATCTTTCTAAATTTGAGCAAGGACTTGTAAATTGCCTAACCCATTGATTGTATCCAGAGAATTGTGGGGAAATTTTGATAGAATAACAATTGCTGGAGACTTGTAAATTGCCTAACCCATTGATTCATCAAGTTGAGTTTTTAATACACTGAAAAAAGCCCTTTCTCAAAGAAAGAAATCCTGAAAAGCCATTGAAATATAAATAGAAGGTTATAGAGTATATTTCATTGAAGAACTATATGAAACTCATTATTTGGTTGAAGAATTATGGTAGGATTAAATGTAGATAGAATTTGGTGTCTTATAATTGTGTGATTCAAAATGAGCTTGACAATCCGTCTTATTTTGCTCGTCTATCTAATAACAAATTTAATCCACTCGACTAATGTAGATTACACTTTCATCAATACACATGTTTAAAAAATTCAAAATTATAGGCCATATATAATAATAGGATATATCAGGAACTTTGGACTTGGAACAAATATTCATAATTGTTACATTTGGCTTTCAAAACAAAATCAAGTCAAGTGGGAAGAATGTTGAAGTTAAAATTAAAAATGAGTAAAAATAACTTTTTGGTCCATATAGATTTAAAAAGTTTTTGTATTAAATTTCAGTTTGCTACATTAACAAAGTAAAATTTTATTACAGTTTACTGATGATATGGAAGTTTAAAATGTAAAAATTAATAAGCATAATAATAAAAAACAAAAATCCCTCTCTCCCTTCTTCAGATAGCTCTTTAACTTTGGAGATGGTGAGGAACAAAGTGATAGTTATTTGCAATATATTTGGCATGTTCATGGAAAATCATGTTGTGAGCAGCCCTGAGGAACATCCATATGTTGAGAAGTTAGTATCAGTAAAAGCACGATATTCAGATTCAATACAAAGAAATTTTTTCAAGTAGACCCAACAACCTATGGTGCTCATGAAGTTGGAATAAGACAAAACAAATACAACCAAAGACTTTCAGGTAAAAGTAAAGTAAGATAGATGAAATTTACATATATACGTTTAGCCTATTTACTATCGAATAACGATAATAATATTTCTTATAACTTTTTTAAAAGGTTAAATGTATTGATGCAAGTGTTAAAAGTTTATAGGTATTTTTGAATTGAAGCGATGGTTTTCATATATTAGGGGTGTAAGCCATAAACGAAAAAAACTACTCAAACAAATCAAAAGCAACAACGATTTCGTGTCGACTTGGTTGCACTTTGTCAAGTTTGGAAGCCGATCAAATGGTCAACTTTGATTTATGAGGTGGCACGCCGGTAGTTTGAAACTCTAACTGATCAAATCACTATGTTATTTTTCAATTTTTAATTTCTAAGTTCCTAGTTTCAACTTTAACATTCCTGTACCAGCTCCAACTTGTTTGATTATTTCACGGCGTGTGTAGTGTATAGGTGTACTGTGTATGTATGATCAGTTCATATACTAAGTTCAAGTTTATAATAAAACTTTTAAATGTCTATAAATACTTTTTAAATAAAGTATTAACAGTTTTTGTCTATATTCTAATAATAAGGATATTGTATAATTTTTTTTTAAAAAATTCATAGGTTGTTTGAGTTGATAAGTTGAGTTACAAAAGATGAAGTTAATAGGTGGTCGTTAGAGGATGCCTCCAACAATTTTGAAGGTTCTCGTTGTTGGTGGTTAACGACAGGATTGATTCTTTGAAAATATTGGAACGAGGGAGAGAGAGAGAAAAAGATAGAATTCTTTGATAAATATGCAAACTTCAATTATGAACATTTTTTAATTTAGTGAAGTTGAGTTATTTAATATTAATTTTTAAAGTTGGTAAGCTAAACATTGAATCGAGTGAAAATCTCAACTCAACTCCCCTTAGTTAATGTCCCAAACATCCGAAGATATTCATGAAAATTTTGAAAGTTTAGTGGCATGTGTTAAATTAAGTATAAAGTTAAAATATAAATTCGAAATTTTGATTCGTAGATTAGCCGCTCATAATATGATTGTGTTTTTCGTTTCCCTCCCCACTACTCGGCGGTTACAATAAAAATTTCACATTTACCCGCGGAGAAATTGAAAAGGCAATTTCAAAAGCACAATCCGCGAACTTTTCACGCGAATCGAGTTTCTCGACCGTCGGATGAACCCAACATCCAACGAACGATATAACTCCCCGCGCAAACAATTTCCTCACGGGATTCCGAATTTACACATATAAATAAAATCCCCCAATCATATTACTCTCAGCACCAATTTCAAATCCCTTCCTCAAAAATTACTCTCTCTAATCTCTCGATTAAGCTTCGATAATGTCAGGCCGTGGAAAAGGAGGCAAAGGATTGGGAAAAGGAGGAGCAAAGCGTCATAGGAAGGTTTTGAGGGATAACATCCAGGGAATTACGAAGCCAGCAATTCGCCGATTGGCTCGTAGAGGCGGTGTGAAGCGAATTAGTGGTTTGATCTATGAGGAAACCAGAGGCGTTTTGAAGATCTTTCTTGAGAATGTGATTCGCGATGCTGTGACCTACACAGAGCACGCCAGGAGGAAGACGGTGACCGCCATGGATGTGGTTTATGCGCTGAAAAGGCAGGGAAGGACCTTGTACGGTTTCGGTGGTTAG

mRNA sequence

ATGTCCGGCCGCGGAAAGGGAGGCAAGGGTTTGGGAAAAGGAGGAGCAAAGCGTCACAGGAAGGTCTTAAGAGATAACATTCAAGGCATCACAAAGCCTGCAATTCGCCGTTTGGCTCGTCGTGGAGGTGTTAAGCGAATCAGCGGTTTGATTTATGAAGAAACCAGAGGCGTTTTGAAGATCTTTCTTGAGAATGTGATTCGCGATGCTGTGACCTACACAGAGCACGCCAGGAGAAAGACGGTGACCGCCATGGATGTGGTTTATGCCTTGAAAAGGCAGGGAAGGACTTTGTACGGTTTCGGAGGCCGTGGAAAAGGAGGCAAAGGATTGGGAAAAGGAGGAGCAAAGCGTCATAGGAAGGTTTTGAGGGATAACATCCAGGGAATTACGAAGCCAGCAATTCGCCGATTGGCTCGTAGAGGCGGTGTGAAGCGAATTAGTGGTTTGATCTATGAGGAAACCAGAGGCGTTTTGAAGATCTTTCTTGAGAATGTGATTCGCGATGCTGTGACCTACACAGAGCACGCCAGGAGGAAGACGGTGACCGCCATGGATGTGGTTTATGCGCTGAAAAGGCAGGGAAGGACCTTGTACGGTTTCGGTGGTTAG

Coding sequence (CDS)

ATGTCCGGCCGCGGAAAGGGAGGCAAGGGTTTGGGAAAAGGAGGAGCAAAGCGTCACAGGAAGGTCTTAAGAGATAACATTCAAGGCATCACAAAGCCTGCAATTCGCCGTTTGGCTCGTCGTGGAGGTGTTAAGCGAATCAGCGGTTTGATTTATGAAGAAACCAGAGGCGTTTTGAAGATCTTTCTTGAGAATGTGATTCGCGATGCTGTGACCTACACAGAGCACGCCAGGAGAAAGACGGTGACCGCCATGGATGTGGTTTATGCCTTGAAAAGGCAGGGAAGGACTTTGTACGGTTTCGGAGGCCGTGGAAAAGGAGGCAAAGGATTGGGAAAAGGAGGAGCAAAGCGTCATAGGAAGGTTTTGAGGGATAACATCCAGGGAATTACGAAGCCAGCAATTCGCCGATTGGCTCGTAGAGGCGGTGTGAAGCGAATTAGTGGTTTGATCTATGAGGAAACCAGAGGCGTTTTGAAGATCTTTCTTGAGAATGTGATTCGCGATGCTGTGACCTACACAGAGCACGCCAGGAGGAAGACGGTGACCGCCATGGATGTGGTTTATGCGCTGAAAAGGCAGGGAAGGACCTTGTACGGTTTCGGTGGTTAG

Protein sequence

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG

Homology

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BLAST of Lsi03G002740 vs. ExPASy Swiss-Prot
Match: P62785 (Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2)

HSP 1 Score: 198.7 bits (504), Expect = 6.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Lsi03G002740 vs. ExPASy Swiss-Prot
Match: P59259 (Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 198.7 bits (504), Expect = 6.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Lsi03G002740 vs. ExPASy Swiss-Prot
Match: Q6PMI5 (Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3)

HSP 1 Score: 198.7 bits (504), Expect = 6.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Lsi03G002740 vs. ExPASy Swiss-Prot
Match: Q6WZ83 (Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3)

HSP 1 Score: 198.7 bits (504), Expect = 6.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Lsi03G002740 vs. ExPASy Swiss-Prot
Match: Q6LAF3 (Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3)

HSP 1 Score: 198.7 bits (504), Expect = 6.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Lsi03G002740 vs. ExPASy TrEMBL
Match: A0A251UR62 (Histone H4 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0148881 PE=3 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.2e-104
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGRGKGGKGLGKGGAKRHR 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGRGKGGKGLGKGGAKRHR
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGRGKGGKGLGKGGAKRHR 120

Query: 121 KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 180
           KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK
Sbjct: 121 KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 180

Query: 181 TVTAMDVVYALKRQGRTLYGFGG 204
           TVTAMDVVYALKRQGRTLYGFGG
Sbjct: 181 TVTAMDVVYALKRQGRTLYGFGG 203

[Close]

BLAST of Lsi03G002740 vs. ExPASy TrEMBL
Match: A0A7J6GPD4 (Histone H4 OS=Cannabis sativa OX=3483 GN=G4B88_016392 PE=3 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.7e-103
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 3   GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIF 62
           GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIF
Sbjct: 100 GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIF 159

Query: 63  LENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGRGKGGKGLGKGGAKRHRKV 122
           LENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGRGKGGKGLGKGGAKRHRKV
Sbjct: 160 LENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGRGKGGKGLGKGGAKRHRKV 219

Query: 123 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTV 182
           LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTV
Sbjct: 220 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTV 279

Query: 183 TAMDVVYALKRQGRTLYGFGG 204
           TAMDVVYALKRQGRTLYGFGG
Sbjct: 280 TAMDVVYALKRQGRTLYGFGG 300

[Close]

BLAST of Lsi03G002740 vs. ExPASy TrEMBL
Match: A0A1S4BDS0 (Histone H4 OS=Nicotiana tabacum OX=4097 GN=LOC107807147 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.4e-102
Identity = 203/210 (96.67%), Postives = 203/210 (96.67%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG-------GRGKGGKGLGK 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG       GRGKGGKGLGK
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGNRLKMSGRGKGGKGLGK 120

Query: 121 GGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTY 180
           GGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTY
Sbjct: 121 GGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTY 180

Query: 181 TEHARRKTVTAMDVVYALKRQGRTLYGFGG 204
           TEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 181 TEHARRKTVTAMDVVYALKRQGRTLYGFGG 210

[Close]

BLAST of Lsi03G002740 vs. ExPASy TrEMBL
Match: A0A6G0JAQ8 (Histone H4 OS=Larimichthys crocea OX=215358 GN=D5F01_LYC00834 PE=3 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 5.5e-102
Identity = 199/207 (96.14%), Postives = 203/207 (98.07%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG----GRGKGGKGLGKGGA 120
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG    GRGKGGKGLGKGGA
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGVKMSGRGKGGKGLGKGGA 120

Query: 121 KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEH 180
           KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEH
Sbjct: 121 KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEH 180

Query: 181 ARRKTVTAMDVVYALKRQGRTLYGFGG 204
           A+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 181 AKRKTVTAMDVVYALKRQGRTLYGFGG 207

[Close]

BLAST of Lsi03G002740 vs. ExPASy TrEMBL
Match: A0A6J2U679 (Histone H4 OS=Drosophila lebanonensis OX=7225 GN=LOC115630268 PE=3 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 9.4e-102
Identity = 198/206 (96.12%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           M+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG---GRGKGGKGLGKGGAK 120
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG   GRGKGGKGLGKGGAK
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGEMTGRGKGGKGLGKGGAK 120

Query: 121 RHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA 180
           RHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA
Sbjct: 121 RHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 180

Query: 181 RRKTVTAMDVVYALKRQGRTLYGFGG 204
           +RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 181 KRKTVTAMDVVYALKRQGRTLYGFGG 206

[Close]

BLAST of Lsi03G002740 vs. NCBI nr
Match: KAF4383959.1 (hypothetical protein G4B88_016392 [Cannabis sativa])

HSP 1 Score: 385.2 bits (988), Expect = 3.5e-103
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 3   GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIF 62
           GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIF
Sbjct: 100 GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIF 159

Query: 63  LENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGRGKGGKGLGKGGAKRHRKV 122
           LENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGRGKGGKGLGKGGAKRHRKV
Sbjct: 160 LENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGRGKGGKGLGKGGAKRHRKV 219

Query: 123 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTV 182
           LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTV
Sbjct: 220 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTV 279

Query: 183 TAMDVVYALKRQGRTLYGFGG 204
           TAMDVVYALKRQGRTLYGFGG
Sbjct: 280 TAMDVVYALKRQGRTLYGFGG 300

[Close]

BLAST of Lsi03G002740 vs. NCBI nr
Match: XP_012064943.2 (uncharacterized protein LOC105628185 [Jatropha curcas])

HSP 1 Score: 383.3 bits (983), Expect = 1.3e-102
Identity = 203/207 (98.07%), Postives = 203/207 (98.07%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG----GRGKGGKGLGKGGA 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG    GRGKGGKGLGKGGA
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGKMSGRGKGGKGLGKGGA 120

Query: 121 KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEH 180
           KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEH
Sbjct: 121 KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEH 180

Query: 181 ARRKTVTAMDVVYALKRQGRTLYGFGG 204
           ARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 181 ARRKTVTAMDVVYALKRQGRTLYGFGG 207

[Close]

BLAST of Lsi03G002740 vs. NCBI nr
Match: XP_004143094.2 (LOW QUALITY PROTEIN: uncharacterized protein LOC101218464 [Cucumis sativus])

HSP 1 Score: 382.9 bits (982), Expect = 1.7e-102
Identity = 203/208 (97.60%), Postives = 203/208 (97.60%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG-----GRGKGGKGLGKGG 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG     GRGKGGKGLGKGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGXNMSGRGKGGKGLGKGG 120

Query: 121 AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 180
           AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE
Sbjct: 121 AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 180

Query: 181 HARRKTVTAMDVVYALKRQGRTLYGFGG 204
           HARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 181 HARRKTVTAMDVVYALKRQGRTLYGFGG 208

[Close]

BLAST of Lsi03G002740 vs. NCBI nr
Match: XP_021864639.1 (uncharacterized protein LOC110803439 [Spinacia oleracea])

HSP 1 Score: 382.5 bits (981), Expect = 2.3e-102
Identity = 203/209 (97.13%), Postives = 203/209 (97.13%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG------GRGKGGKGLGKG 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG      GRGKGGKGLGKG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGREKMSGRGKGGKGLGKG 120

Query: 121 GAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYT 180
           GAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYT
Sbjct: 121 GAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYT 180

Query: 181 EHARRKTVTAMDVVYALKRQGRTLYGFGG 204
           EHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 181 EHARRKTVTAMDVVYALKRQGRTLYGFGG 209

[Close]

BLAST of Lsi03G002740 vs. NCBI nr
Match: XP_033509709.1 (uncharacterized protein LOC104087621 [Nicotiana tomentosiformis])

HSP 1 Score: 382.5 bits (981), Expect = 2.3e-102
Identity = 203/209 (97.13%), Postives = 203/209 (97.13%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG------GRGKGGKGLGKG 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG      GRGKGGKGLGKG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGRLKMSGRGKGGKGLGKG 120

Query: 121 GAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYT 180
           GAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYT
Sbjct: 121 GAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYT 180

Query: 181 EHARRKTVTAMDVVYALKRQGRTLYGFGG 204
           EHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 181 EHARRKTVTAMDVVYALKRQGRTLYGFGG 209

[Close]

BLAST of Lsi03G002740 vs. TAIR 10
Match: AT1G07660.1 (Histone superfamily protein )

HSP 1 Score: 198.7 bits (504), Expect = 4.4e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Lsi03G002740 vs. TAIR 10
Match: AT1G07820.1 (Histone superfamily protein )

HSP 1 Score: 198.7 bits (504), Expect = 4.4e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Lsi03G002740 vs. TAIR 10
Match: AT1G07820.2 (Histone superfamily protein )

HSP 1 Score: 198.7 bits (504), Expect = 4.4e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Lsi03G002740 vs. TAIR 10
Match: AT2G28740.1 (histone H4 )

HSP 1 Score: 198.7 bits (504), Expect = 4.4e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Lsi03G002740 vs. TAIR 10
Match: AT3G45930.1 (Histone superfamily protein )

HSP 1 Score: 198.7 bits (504), Expect = 4.4e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

The following BLAST results are available for this feature:

BLAST of Lsi03G002740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62785	6.1e-50	100.00	Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2	[more]
P59259	6.1e-50	100.00	Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2	[more]
Q6PMI5	6.1e-50	100.00	Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3	[more]
Q6WZ83	6.1e-50	100.00	Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3	[more]
Q6LAF3	6.1e-50	100.00	Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3	[more]

BLAST of Lsi03G002740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A251UR62	1.2e-104	100.00	Histone H4 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0148881 PE=3 SV=1	[more]
A0A7J6GPD4	1.7e-103	100.00	Histone H4 OS=Cannabis sativa OX=3483 GN=G4B88_016392 PE=3 SV=1	[more]
A0A1S4BDS0	1.4e-102	96.67	Histone H4 OS=Nicotiana tabacum OX=4097 GN=LOC107807147 PE=3 SV=1	[more]
A0A6G0JAQ8	5.5e-102	96.14	Histone H4 OS=Larimichthys crocea OX=215358 GN=D5F01_LYC00834 PE=3 SV=1	[more]
A0A6J2U679	9.4e-102	96.12	Histone H4 OS=Drosophila lebanonensis OX=7225 GN=LOC115630268 PE=3 SV=1	[more]

BLAST of Lsi03G002740 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4383959.1	3.5e-103	100.00	hypothetical protein G4B88_016392 [Cannabis sativa]	[more]
XP_012064943.2	1.3e-102	98.07	uncharacterized protein LOC105628185 [Jatropha curcas]	[more]
XP_004143094.2	1.7e-102	97.60	LOW QUALITY PROTEIN: uncharacterized protein LOC101218464 [Cucumis sativus]	[more]
XP_021864639.1	2.3e-102	97.13	uncharacterized protein LOC110803439 [Spinacia oleracea]	[more]
XP_033509709.1	2.3e-102	97.13	uncharacterized protein LOC104087621 [Nicotiana tomentosiformis]	[more]

BLAST of Lsi03G002740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07660.1	4.4e-51	100.00	Histone superfamily protein	[more]
AT1G07820.1	4.4e-51	100.00	Histone superfamily protein	[more]
AT1G07820.2	4.4e-51	100.00	Histone superfamily protein	[more]
AT2G28740.1	4.4e-51	100.00	histone H4	[more]
AT3G45930.1	4.4e-51	100.00	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001951	Histone H4	PRINTS	PR00623	HISTONEH4	coord: 5..16 score: 95.59 coord: 89..100 score: 97.79 coord: 77..89 score: 90.05 coord: 62..76 score: 95.1 coord: 20..39 score: 93.38 coord: 40..60 score: 93.56
IPR001951	Histone H4	SMART	SM00417	h44	coord: 116..190 e-value: 2.0E-29 score: 113.7 coord: 16..90 e-value: 2.0E-29 score: 113.7
IPR001951	Histone H4	CDD	cd00076	H4	coord: 18..99 e-value: 7.9772E-39 score: 126.847
IPR001951	Histone H4	CDD	cd00076	H4	coord: 118..201 e-value: 2.95091E-40 score: 130.314
IPR004823	TATA box binding protein associated factor (TAF)	SMART	SM00803	TAF_cls	coord: 28..93 e-value: 0.011 score: 15.9 coord: 128..193 e-value: 0.011 score: 15.9
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 103..203 e-value: 1.6E-57 score: 193.9 coord: 2..102 e-value: 4.6E-58 score: 195.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 103..202
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 3..102
IPR035425	CENP-T/Histone H4, histone fold	PFAM	PF15511	CENP-T_C	coord: 139..196 e-value: 1.0E-7 score: 32.0 coord: 39..96 e-value: 1.0E-7 score: 32.0
None	No IPR available	PANTHER	PTHR10484:SF185	HISTONE H4	coord: 103..203
None	No IPR available	PANTHER	PTHR10484	HISTONE H4	coord: 1..103 coord: 103..203
None	No IPR available	PANTHER	PTHR10484:SF185	HISTONE H4	coord: 1..103
IPR019809	Histone H4, conserved site	PROSITE	PS00047	HISTONE_H4	coord: 115..119
IPR019809	Histone H4, conserved site	PROSITE	PS00047	HISTONE_H4	coord: 15..19

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G002740.1	Lsi03G002740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity