Lsi03G002670 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G002670
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Reticulon-like protein
Location	chr03: 3292678 .. 3294565 (-)
RNA-Seq Expression	Lsi03G002670
Synteny	Lsi03G002670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGCTAGATTCGTCCATATTCTATTCATTTATATGTGTTCCCTTTTTTGCATTTGAATACGGCTTTGACCGGTTGAAACTTGAAGTTTTTGTTACCTTTTGCTTTGGGAATCGGATTCTACATTGGCTATTTTTCCAGTTTATTACAAATTTCTTCAGTAGTTTTCAGGTTTCTTCTTTCTGTCTTAGAAGGAAAATTTTTGGAAAAAAAATGATGATATTCCCTTTCTGGTTTGATAATCAGGAATTTTGACCCTTTCTTCTTTTGCATAGCGGCTGATATTCTTCTGTGGAAACAGTGGCATGTTTCTTTCGGCATTGTTGTTGTTGCTACGGTATTTTGGCTTCTAATTGAGCACTCTGGATTGCCATTGTTGACAACATGTTCGGATGTCTTGCTGATTTTGGTTGTCCTATTGTTTCTTCGTGCCAACTTTGCTGCATTCCGAAACAAGTATGGCTATGGCTGACTTATGTTTTGATTCACTGTGAAGTTCTTGCATATCAGAATCTTTGACAGGATACTTTTTTGTTCTTTCCAGCAGATAATGTGTTTTCCCTGTTAGCTTTTCTTCATTCTCTCTCTGTATGCAGGCAACTTCAAACATTACCGCAGCTGGTACTGTCGGAGGAGTTTGTCAATAATGTAGCGGCATCGCTCCGGGCGAAAATCAATAACACTTTACTTATGGCTCATGAAATCACACTTGGCAATGATTTCAAACTCTTTTTCAGGGTTAGTATTTGAAGTACCATTGAAGACTTGAATTATCATACATGTGATTTACACTGTGACTTCTACTCCTAATATCCCATATTATTGGAACTTGAATTATGGGCAAAACTGAAAAGTAGTTATTGGTTTTAAGTGCTTCTCCTCTAGATCAATATATTGAATATAATATGCGCCATCGATGACGCCATTTGGATGTGGCAACCGTGAGTTGCTCAAGCCTGAGGCAGTGAATGTTTACAGGACAGTTTAAAGAATGCATAAACTTATTCACTTCAAGAGCATAATGTTGGCTTGCTACTTCTTTGTTTTTGGCTGCAATAATATGAGTAACCTTGCAAACACCTCTTGCAGATTGTGATCTGTTTGTGGATTTTATCCGTCCTTGGTAGCTACGTTTCTTTCTTCACCTTTGCATATATCGGTATGTATGAACATCCTAAAACACCTACAATGACATATCTTTAGTTCATATATGTTTCATCTGTTGCTTAATTACAGCAATCAACCACTTTACTTCATTTTGATCCTCATTGATGACTAAACATTCATAGAATTTTGTTTGTTTGGCCCATTCACCATTTTCTTTCATATTTCCTGCACACAAGAAATGAACACTGTCTAAAATTTCCTTTTCCGAGTATACTTTCTCATTGCCATGACCATCATTTTCATGGTTTTTACTCAGTTTACTGATCTAGGAAATATAATTGGCCCCCCTTTGTAATCGAGTCTTTTTAACCTGTGATGTTGATTTTTGCCTTTTAACTAACTCGATGACAGGAACAATCATCTCGATAACCGTCCCTGCCTTGTACAGCAAATACGATAAACAAGTTGACAGATACTGCGGAATGATCCGCCAACAATTTAGAAAGCATTATAGAGTGATGGATGAGAGTGTTTTCAGCAGACTCCCTGGTAGTTTATCCAAGGATAAAGACCAGTGAAAAATCCTGCCTTGTACTAAACCACGGGAAAATTGTAATATTGTTTCATCTCAAATGAATGTAACTGGATTCTTGAAGGTTATTGCTTGGCCATGTATTGCATACCTAGGTTTAATGATTTCAACCATTCTAGATCAGAGATTACAGTTTCTTTTTTTAAATTGCTAGAAAACAAAAAATATGAAAAAAGTACAGGGTTG

mRNA sequence

ATGGCGGCTGATATTCTTCTGTGGAAACAGTGGCATGTTTCTTTCGGCATTGTTGTTGTTGCTACGGTATTTTGGCTTCTAATTGAGCACTCTGGATTGCCATTGTTGACAACATGTTCGGATGTCTTGCTGATTTTGGTTGTCCTATTGTTTCTTCGTGCCAACTTTGCTGCATTCCGAAACAAGCAACTTCAAACATTACCGCAGCTGGTACTGTCGGAGGAGTTTGTCAATAATGTAGCGGCATCGCTCCGGGCGAAAATCAATAACACTTTACTTATGGCTCATGAAATCACACTTGGCAATGATTTCAAACTCTTTTTCAGGATTGTGATCTGTTTGTGGATTTTATCCGTCCTTGGTAGCTACGTTTCTTTCTTCACCTTTGCATATATCGGAACAATCATCTCGATAACCGTCCCTGCCTTGTACAGCAAATACGATAAACAAGTTGACAGATACTGCGGAATGATCCGCCAACAATTTAGAAAGCATTATAGAGTGATGGATGAGAGTGTTTTCAGCAGACTCCCTGGTAGTTTATCCAAGGATAAAGACCAGTGAAAAATCCTGCCTTGTACTAAACCACGGGAAAATTGTAATATTGTTTCATCTCAAATGAATGTAACTGGATTCTTGAAGGTTATTGCTTGGCCATGTATTGCATACCTAGGTTTAATGATTTCAACCATTCTAGATCAGAGATTACAGTTTCTTTTTTTAAATTGCTAGAAAACAAAAAATATGAAAAAAGTACAGGGTTG

Coding sequence (CDS)

ATGGCGGCTGATATTCTTCTGTGGAAACAGTGGCATGTTTCTTTCGGCATTGTTGTTGTTGCTACGGTATTTTGGCTTCTAATTGAGCACTCTGGATTGCCATTGTTGACAACATGTTCGGATGTCTTGCTGATTTTGGTTGTCCTATTGTTTCTTCGTGCCAACTTTGCTGCATTCCGAAACAAGCAACTTCAAACATTACCGCAGCTGGTACTGTCGGAGGAGTTTGTCAATAATGTAGCGGCATCGCTCCGGGCGAAAATCAATAACACTTTACTTATGGCTCATGAAATCACACTTGGCAATGATTTCAAACTCTTTTTCAGGATTGTGATCTGTTTGTGGATTTTATCCGTCCTTGGTAGCTACGTTTCTTTCTTCACCTTTGCATATATCGGAACAATCATCTCGATAACCGTCCCTGCCTTGTACAGCAAATACGATAAACAAGTTGACAGATACTGCGGAATGATCCGCCAACAATTTAGAAAGCATTATAGAGTGATGGATGAGAGTGTTTTCAGCAGACTCCCTGGTAGTTTATCCAAGGATAAAGACCAGTGA

Protein sequence

MAADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRNKQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVLGSYVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKDQ

Homology

[Close]

BLAST of Lsi03G002670 vs. ExPASy Swiss-Prot
Match: Q8GYH6 (Reticulon-like protein B16 OS=Arabidopsis thaliana OX=3702 GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.3e-59
Identity = 107/185 (57.84%), Postives = 151/185 (81.62%), Query Frame = 0


Query: 2   AADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRN 61
           AAD+LLW++ H+S G+++++TV WL+ E SGLP L+  SDVLLI++++ F+ A  +AFRN
Sbjct: 41  AADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRN 100

Query: 62  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVLG 121
           +QL +LP+LVLSEE VN+ AAS R K+N+ L+MAH++T+GNDF+LFF++VICLW+LS +G
Sbjct: 101 RQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIG 160

Query: 122 SYVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGSL 181
           SY+S  T  YIGTI+S+T+PALYSKY  +VD+ CG I ++   HY+++DE+V SRL  SL
Sbjct: 161 SYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSL 220

Query: 182 SKDKD 187
           SKDKD
Sbjct: 221 SKDKD 225

[Close]

BLAST of Lsi03G002670 vs. ExPASy Swiss-Prot
Match: Q9SUT9 (Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.4e-26
Identity = 69/183 (37.70%), Postives = 101/183 (55.19%), Query Frame = 0


Query: 3   ADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRNK 62
           ADI +WK   +S G+   ATV W+L E     LLT    V+++ + +LFL +N   F +K
Sbjct: 86  ADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHK 145

Query: 63  QLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVLGS 122
               +P++ + EE +  +A+ LR +IN  +    EI  G D K F   +  LW+LS+LG 
Sbjct: 146 SPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGG 205

Query: 123 YVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGSLS 182
             SF T AYI  ++  TVP  Y KY+ +VD Y      + +K Y V+D  VFS++P    
Sbjct: 206 CYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRGPL 265

Query: 183 KDK 186
           KDK
Sbjct: 266 KDK 268

[Close]

BLAST of Lsi03G002670 vs. ExPASy Swiss-Prot
Match: Q6DBN4 (Reticulon-like protein B6 OS=Arabidopsis thaliana OX=3702 GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.2e-25
Identity = 64/185 (34.59%), Postives = 103/185 (55.68%), Query Frame = 0


Query: 1   MAADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFR 60
           + AD+ LW+   +S  ++ VAT  W+L E      L+    +L+  +  LFL +N  AF 
Sbjct: 67  LPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFM 126

Query: 61  NKQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVL 120
           NK    +P++ + EE    + ++LR ++N   ++   I LG D K F  +V  LWI+SV+
Sbjct: 127 NKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVV 186

Query: 121 GSYVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGS 180
           G++ +F T  YI  ++  TVP LY K++ +VD       ++ +KHY V DE V S+LP +
Sbjct: 187 GNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKLPVA 246

Query: 181 LSKDK 186
             K K
Sbjct: 247 SLKAK 251

[Close]

BLAST of Lsi03G002670 vs. ExPASy Swiss-Prot
Match: Q9SUR3 (Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.6e-23
Identity = 65/183 (35.52%), Postives = 100/183 (54.64%), Query Frame = 0


Query: 3   ADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRNK 62
           ADI +WK   +S G++  AT  W++ E     LLT    V+++++ +LFL +N   F NK
Sbjct: 90  ADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINK 149

Query: 63  QLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVLGS 122
               +P++ + EE +  +A+ LR +IN       EI  G D K F   +  LW+LS+LG 
Sbjct: 150 SPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGG 209

Query: 123 YVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGSLS 182
             +F T AYI  ++  TVP  Y KY+ +VD        + +K Y V+DE V S++P    
Sbjct: 210 CFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKIPLGPL 269

Query: 183 KDK 186
           K+K
Sbjct: 270 KNK 272

[Close]

BLAST of Lsi03G002670 vs. ExPASy Swiss-Prot
Match: Q9FFS0 (Reticulon-like protein B4 OS=Arabidopsis thaliana OX=3702 GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-22
Identity = 64/189 (33.86%), Postives = 101/189 (53.44%), Query Frame = 0


Query: 3   ADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRNK 62
           ADI LW+   VS G++   T  W+L E     LL       +  +  LFL +N   F +K
Sbjct: 69  ADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHK 128

Query: 63  QLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVLGS 122
               +P++ + E+ +  + + LR +IN  L +   I  G D K F  ++  LW+LS++GS
Sbjct: 129 STPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGS 188

Query: 123 YVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDE----SVFSRLP 182
             +F T  Y  T++  T+P LY KY+ +VD Y     ++ +K Y V+DE     V S++P
Sbjct: 189 CYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIP 248

Query: 183 -GSLSKDKD 187
            G+L+K KD
Sbjct: 249 RGALNKKKD 257

[Close]

BLAST of Lsi03G002670 vs. ExPASy TrEMBL
Match: A0A5A7U9N4 (Reticulon-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001790 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.6e-90
Identity = 174/186 (93.55%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 2   AADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRN 61
           AADILLWKQWHVSFGI+VV+TVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRAN+AAFRN
Sbjct: 39  AADILLWKQWHVSFGIIVVSTVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANYAAFRN 98

Query: 62  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVLG 121
           KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAH+ITLGNDFKLFFR+VI LW+LSV+G
Sbjct: 99  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHDITLGNDFKLFFRMVIGLWLLSVVG 158

Query: 122 SYVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGSL 181
           SYVSFFTFAYIGTIISIT+PALYSKYDK VDRYCGMIRQQFRKHYRVMDESVFSRLPG+L
Sbjct: 159 SYVSFFTFAYIGTIISITIPALYSKYDKHVDRYCGMIRQQFRKHYRVMDESVFSRLPGNL 218

Query: 182 SKDKDQ 188
           SKDK+Q
Sbjct: 219 SKDKNQ 224

[Close]

BLAST of Lsi03G002670 vs. ExPASy TrEMBL
Match: A0A1S3C5B5 (Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103496616 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.6e-90
Identity = 174/186 (93.55%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 2   AADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRN 61
           AADILLWKQWHVSFGI+VV+TVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRAN+AAFRN
Sbjct: 39  AADILLWKQWHVSFGIIVVSTVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANYAAFRN 98

Query: 62  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVLG 121
           KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAH+ITLGNDFKLFFR+VI LW+LSV+G
Sbjct: 99  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHDITLGNDFKLFFRMVIGLWLLSVVG 158

Query: 122 SYVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGSL 181
           SYVSFFTFAYIGTIISIT+PALYSKYDK VDRYCGMIRQQFRKHYRVMDESVFSRLPG+L
Sbjct: 159 SYVSFFTFAYIGTIISITIPALYSKYDKHVDRYCGMIRQQFRKHYRVMDESVFSRLPGNL 218

Query: 182 SKDKDQ 188
           SKDK+Q
Sbjct: 219 SKDKNQ 224

[Close]

BLAST of Lsi03G002670 vs. ExPASy TrEMBL
Match: A0A0A0KBS2 (Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G014530 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.3e-89
Identity = 172/186 (92.47%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 2   AADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRN 61
           AADILLWKQWHVS G++VV+TVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRN
Sbjct: 39  AADILLWKQWHVSIGVLVVSTVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRN 98

Query: 62  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVLG 121
           KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAH+IT+GNDFKLFFR+VI LW+LSV+G
Sbjct: 99  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHDITVGNDFKLFFRMVIGLWLLSVVG 158

Query: 122 SYVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGSL 181
           SYVSFFTFAY+GTIISIT+PALYSKYDK VDRYCGMIRQQFRKHYRVMDESVFSRLPG L
Sbjct: 159 SYVSFFTFAYVGTIISITIPALYSKYDKHVDRYCGMIRQQFRKHYRVMDESVFSRLPGGL 218

Query: 182 SKDKDQ 188
           SKDKDQ
Sbjct: 219 SKDKDQ 224

[Close]

BLAST of Lsi03G002670 vs. ExPASy TrEMBL
Match: A0A6J1FJV2 (Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111444692 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.6e-87
Identity = 171/186 (91.94%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 2   AADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRN 61
           AADILLWKQ HVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLL+LVVLLFLRANFAAFR 
Sbjct: 38  AADILLWKQRHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRK 97

Query: 62  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVLG 121
           KQLQTLPQLVLSEEFV+NVAAS RAKINN LL+AH+ITLGNDFKLFFR+VICLW+LSVLG
Sbjct: 98  KQLQTLPQLVLSEEFVDNVAASFRAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLG 157

Query: 122 SYVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGSL 181
           SY+SFFTFAYIGTIISIT+PALYSKYDK VDR CGMIRQQFRKHYRVMDESVFSRLPGSL
Sbjct: 158 SYLSFFTFAYIGTIISITIPALYSKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSL 217

Query: 182 SKDKDQ 188
           SKDK Q
Sbjct: 218 SKDKHQ 223

[Close]

BLAST of Lsi03G002670 vs. ExPASy TrEMBL
Match: A0A6J1K105 (Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111489673 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.3e-86
Identity = 171/186 (91.94%), Postives = 178/186 (95.70%), Query Frame = 0


Query: 2   AADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRN 61
           AADILLWKQ HVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLL+LVVLLFLRANFAAFR 
Sbjct: 38  AADILLWKQRHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRK 97

Query: 62  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVLG 121
           KQLQTLPQLVLSEEFV+NVAAS RAKINN LL+AH+ITLGNDFKLFFR+VICLW+LSVLG
Sbjct: 98  KQLQTLPQLVLSEEFVDNVAASFRAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLG 157

Query: 122 SYVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGSL 181
           SY+SFFTFAYIGTIISITVPALYSKYDK VDR CGMIRQQFRKHYRVMDE VFSRLPGSL
Sbjct: 158 SYLSFFTFAYIGTIISITVPALYSKYDKHVDRCCGMIRQQFRKHYRVMDERVFSRLPGSL 217

Query: 182 SKDKDQ 188
           SKDK Q
Sbjct: 218 SKDKHQ 223

[Close]

BLAST of Lsi03G002670 vs. NCBI nr
Match: XP_008456773.1 (PREDICTED: reticulon-like protein B16 [Cucumis melo] >KAA0052008.1 reticulon-like protein B16 [Cucumis melo var. makuwa] >TYK04551.1 reticulon-like protein B16 [Cucumis melo var. makuwa])

HSP 1 Score: 341.3 bits (874), Expect = 5.4e-90
Identity = 174/186 (93.55%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 2   AADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRN 61
           AADILLWKQWHVSFGI+VV+TVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRAN+AAFRN
Sbjct: 39  AADILLWKQWHVSFGIIVVSTVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANYAAFRN 98

Query: 62  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVLG 121
           KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAH+ITLGNDFKLFFR+VI LW+LSV+G
Sbjct: 99  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHDITLGNDFKLFFRMVIGLWLLSVVG 158

Query: 122 SYVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGSL 181
           SYVSFFTFAYIGTIISIT+PALYSKYDK VDRYCGMIRQQFRKHYRVMDESVFSRLPG+L
Sbjct: 159 SYVSFFTFAYIGTIISITIPALYSKYDKHVDRYCGMIRQQFRKHYRVMDESVFSRLPGNL 218

Query: 182 SKDKDQ 188
           SKDK+Q
Sbjct: 219 SKDKNQ 224

[Close]

BLAST of Lsi03G002670 vs. NCBI nr
Match: XP_004138395.1 (reticulon-like protein B16 isoform X1 [Cucumis sativus] >KGN45832.1 hypothetical protein Csa_004771 [Cucumis sativus])

HSP 1 Score: 339.0 bits (868), Expect = 2.7e-89
Identity = 172/186 (92.47%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 2   AADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRN 61
           AADILLWKQWHVS G++VV+TVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRN
Sbjct: 39  AADILLWKQWHVSIGVLVVSTVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRN 98

Query: 62  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVLG 121
           KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAH+IT+GNDFKLFFR+VI LW+LSV+G
Sbjct: 99  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHDITVGNDFKLFFRMVIGLWLLSVVG 158

Query: 122 SYVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGSL 181
           SYVSFFTFAY+GTIISIT+PALYSKYDK VDRYCGMIRQQFRKHYRVMDESVFSRLPG L
Sbjct: 159 SYVSFFTFAYVGTIISITIPALYSKYDKHVDRYCGMIRQQFRKHYRVMDESVFSRLPGGL 218

Query: 182 SKDKDQ 188
           SKDKDQ
Sbjct: 219 SKDKDQ 224

[Close]

BLAST of Lsi03G002670 vs. NCBI nr
Match: XP_038885563.1 (reticulon-like protein B16 [Benincasa hispida])

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-88
Identity = 175/186 (94.09%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 2   AADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRN 61
           AADILLWKQ HVSFGIVVVATVFWLLIE+SGLPLLTTCSDVLLILVVLLFLRAN+AAFRN
Sbjct: 39  AADILLWKQRHVSFGIVVVATVFWLLIEYSGLPLLTTCSDVLLILVVLLFLRANYAAFRN 98

Query: 62  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVLG 121
           KQLQTLPQL LSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFR+VI LW+LSV+G
Sbjct: 99  KQLQTLPQLALSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRMVIGLWLLSVMG 158

Query: 122 SYVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGSL 181
           SYVSFFTFAYIGTIISIT+PALYSKYD+ VDRYCGMIRQQFRKHYRVMDESVFSRLPGSL
Sbjct: 159 SYVSFFTFAYIGTIISITIPALYSKYDEHVDRYCGMIRQQFRKHYRVMDESVFSRLPGSL 218

Query: 182 SKDKDQ 188
           SKDKDQ
Sbjct: 219 SKDKDQ 224

[Close]

BLAST of Lsi03G002670 vs. NCBI nr
Match: XP_023549733.1 (reticulon-like protein B16 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.9 bits (847), Expect = 7.3e-87
Identity = 172/186 (92.47%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 2   AADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRN 61
           AADILLWKQ HVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLL+LVVLLFLRANFAAFR 
Sbjct: 38  AADILLWKQRHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRK 97

Query: 62  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVLG 121
           KQLQTLPQLVLSEEFV+NVAAS RAKINN LL+AH+ITLGNDFKLFFR+VICLW+LSVLG
Sbjct: 98  KQLQTLPQLVLSEEFVDNVAASFRAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLG 157

Query: 122 SYVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGSL 181
           SY+SFFTFAYIGTIISITVPALYSKYDK VDR CGMIRQQFRKHYRVMDESVFSRLPGSL
Sbjct: 158 SYLSFFTFAYIGTIISITVPALYSKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSL 217

Query: 182 SKDKDQ 188
           SKDK Q
Sbjct: 218 SKDKHQ 223

[Close]

BLAST of Lsi03G002670 vs. NCBI nr
Match: XP_022938460.1 (reticulon-like protein B16 [Cucurbita moschata] >KAG6578480.1 Reticulon-like protein B16, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016043.1 Reticulon-like protein B16 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330.5 bits (846), Expect = 9.5e-87
Identity = 171/186 (91.94%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 2   AADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRN 61
           AADILLWKQ HVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLL+LVVLLFLRANFAAFR 
Sbjct: 38  AADILLWKQRHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRK 97

Query: 62  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVLG 121
           KQLQTLPQLVLSEEFV+NVAAS RAKINN LL+AH+ITLGNDFKLFFR+VICLW+LSVLG
Sbjct: 98  KQLQTLPQLVLSEEFVDNVAASFRAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLG 157

Query: 122 SYVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGSL 181
           SY+SFFTFAYIGTIISIT+PALYSKYDK VDR CGMIRQQFRKHYRVMDESVFSRLPGSL
Sbjct: 158 SYLSFFTFAYIGTIISITIPALYSKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSL 217

Query: 182 SKDKDQ 188
           SKDK Q
Sbjct: 218 SKDKHQ 223

[Close]

BLAST of Lsi03G002670 vs. TAIR 10
Match: AT3G10915.2 (Reticulon family protein )

HSP 1 Score: 229.9 bits (585), Expect = 1.6e-60
Identity = 107/185 (57.84%), Postives = 151/185 (81.62%), Query Frame = 0


Query: 2   AADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRN 61
           AAD+LLW++ H+S G+++++TV WL+ E SGLP L+  SDVLLI++++ F+ A  +AFRN
Sbjct: 41  AADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRN 100

Query: 62  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVLG 121
           +QL +LP+LVLSEE VN+ AAS R K+N+ L+MAH++T+GNDF+LFF++VICLW+LS +G
Sbjct: 101 RQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIG 160

Query: 122 SYVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGSL 181
           SY+S  T  YIGTI+S+T+PALYSKY  +VD+ CG I ++   HY+++DE+V SRL  SL
Sbjct: 161 SYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSL 220

Query: 182 SKDKD 187
           SKDKD
Sbjct: 221 SKDKD 225

[Close]

BLAST of Lsi03G002670 vs. TAIR 10
Match: AT3G10915.3 (Reticulon family protein )

HSP 1 Score: 229.9 bits (585), Expect = 1.6e-60
Identity = 107/186 (57.53%), Postives = 152/186 (81.72%), Query Frame = 0


Query: 1   MAADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFR 60
           +AAD+LLW++ H+S G+++++TV WL+ E SGLP L+  SDVLLI++++ F+ A  +AFR
Sbjct: 7   VAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFR 66

Query: 61  NKQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVL 120
           N+QL +LP+LVLSEE VN+ AAS R K+N+ L+MAH++T+GNDF+LFF++VICLW+LS +
Sbjct: 67  NRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAI 126

Query: 121 GSYVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGS 180
           GSY+S  T  YIGTI+S+T+PALYSKY  +VD+ CG I ++   HY+++DE+V SRL  S
Sbjct: 127 GSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWS 186

Query: 181 LSKDKD 187
           LSKDKD
Sbjct: 187 LSKDKD 192

[Close]

BLAST of Lsi03G002670 vs. TAIR 10
Match: AT3G10915.6 (Reticulon family protein )

HSP 1 Score: 229.9 bits (585), Expect = 1.6e-60
Identity = 107/185 (57.84%), Postives = 151/185 (81.62%), Query Frame = 0


Query: 2   AADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRN 61
           AAD+LLW++ H+S G+++++TV WL+ E SGLP L+  SDVLLI++++ F+ A  +AFRN
Sbjct: 9   AADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRN 68

Query: 62  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFRIVICLWILSVLG 121
           +QL +LP+LVLSEE VN+ AAS R K+N+ L+MAH++T+GNDF+LFF++VICLW+LS +G
Sbjct: 69  RQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIG 128

Query: 122 SYVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGSL 181
           SY+S  T  YIGTI+S+T+PALYSKY  +VD+ CG I ++   HY+++DE+V SRL  SL
Sbjct: 129 SYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSL 188

Query: 182 SKDKD 187
           SKDKD
Sbjct: 189 SKDKD 193

[Close]

BLAST of Lsi03G002670 vs. TAIR 10
Match: AT3G10915.4 (Reticulon family protein )

HSP 1 Score: 225.3 bits (573), Expect = 4.0e-59
Identity = 107/186 (57.53%), Postives = 151/186 (81.18%), Query Frame = 0


Query: 2   AADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRN 61
           AAD+LLW++ H+S G+++++TV WL+ E SGLP L+  SDVLLI++++ F+ A  +AFRN
Sbjct: 41  AADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRN 100

Query: 62  KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFR-IVICLWILSVL 121
           +QL +LP+LVLSEE VN+ AAS R K+N+ L+MAH++T+GNDF+LFF+ +VICLW+LS +
Sbjct: 101 RQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSAI 160

Query: 122 GSYVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPGS 181
           GSY+S  T  YIGTI+S+T+PALYSKY  +VD+ CG I ++   HY+++DE+V SRL  S
Sbjct: 161 GSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWS 220

Query: 182 LSKDKD 187
           LSKDKD
Sbjct: 221 LSKDKD 226

[Close]

BLAST of Lsi03G002670 vs. TAIR 10
Match: AT3G10915.5 (Reticulon family protein )

HSP 1 Score: 225.3 bits (573), Expect = 4.0e-59
Identity = 107/187 (57.22%), Postives = 152/187 (81.28%), Query Frame = 0


Query: 1   MAADILLWKQWHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFR 60
           +AAD+LLW++ H+S G+++++TV WL+ E SGLP L+  SDVLLI++++ F+ A  +AFR
Sbjct: 62  IAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFR 121

Query: 61  NKQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHEITLGNDFKLFFR-IVICLWILSV 120
           N+QL +LP+LVLSEE VN+ AAS R K+N+ L+MAH++T+GNDF+LFF+ +VICLW+LS 
Sbjct: 122 NRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSA 181

Query: 121 LGSYVSFFTFAYIGTIISITVPALYSKYDKQVDRYCGMIRQQFRKHYRVMDESVFSRLPG 180
           +GSY+S  T  YIGTI+S+T+PALYSKY  +VD+ CG I ++   HY+++DE+V SRL  
Sbjct: 182 IGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSW 241

Query: 181 SLSKDKD 187
           SLSKDKD
Sbjct: 242 SLSKDKD 248

The following BLAST results are available for this feature:

BLAST of Lsi03G002670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYH6	2.3e-59	57.84	Reticulon-like protein B16 OS=Arabidopsis thaliana OX=3702 GN=RTNLB16 PE=2 SV=1	[more]
Q9SUT9	7.4e-26	37.70	Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1	[more]
Q6DBN4	8.2e-25	34.59	Reticulon-like protein B6 OS=Arabidopsis thaliana OX=3702 GN=RTNLB6 PE=1 SV=1	[more]
Q9SUR3	2.6e-23	35.52	Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1	[more]
Q9FFS0	2.2e-22	33.86	Reticulon-like protein B4 OS=Arabidopsis thaliana OX=3702 GN=RTNLB4 PE=1 SV=1	[more]

BLAST of Lsi03G002670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U9N4	2.6e-90	93.55	Reticulon-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]
A0A1S3C5B5	2.6e-90	93.55	Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103496616 PE=4 SV=1	[more]
A0A0A0KBS2	1.3e-89	92.47	Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G014530 PE=4 SV=1	[more]
A0A6J1FJV2	4.6e-87	91.94	Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111444692 PE=4 SV=1	[more]
A0A6J1K105	1.3e-86	91.94	Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111489673 PE=4 SV=1	[more]

BLAST of Lsi03G002670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456773.1	5.4e-90	93.55	PREDICTED: reticulon-like protein B16 [Cucumis melo] >KAA0052008.1 reticulon-lik...	[more]
XP_004138395.1	2.7e-89	92.47	reticulon-like protein B16 isoform X1 [Cucumis sativus] >KGN45832.1 hypothetical...	[more]
XP_038885563.1	1.3e-88	94.09	reticulon-like protein B16 [Benincasa hispida]	[more]
XP_023549733.1	7.3e-87	92.47	reticulon-like protein B16 [Cucurbita pepo subsp. pepo]	[more]
XP_022938460.1	9.5e-87	91.94	reticulon-like protein B16 [Cucurbita moschata] >KAG6578480.1 Reticulon-like pro...	[more]

BLAST of Lsi03G002670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10915.2	1.6e-60	57.84	Reticulon family protein	[more]
AT3G10915.3	1.6e-60	57.53	Reticulon family protein	[more]
AT3G10915.6	1.6e-60	57.84	Reticulon family protein	[more]
AT3G10915.4	4.0e-59	57.53	Reticulon family protein	[more]
AT3G10915.5	4.0e-59	57.22	Reticulon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 3..156 e-value: 1.5E-44 score: 151.7
IPR003388	Reticulon	PROSITE	PS50845	RETICULON	coord: 2..187 score: 29.962778
None	No IPR available	PANTHER	PTHR10994:SF67	RETICULON-LIKE PROTEIN B16	coord: 2..186
IPR045064	Reticulon-like protein, plant	PANTHER	PTHR10994	RETICULON	coord: 2..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G002670.1	Lsi03G002670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009617	response to bacterium
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane