Lsi03G002090 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G002090
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box protein At3g07870-like
Locationchr03: 2697044 .. 2703289 (+)
RNA-Seq ExpressionLsi03G002090
SyntenyLsi03G002090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAAGTGAACCTGAGCTTGACCTTTGGCTTCTCCGGCATGGTAGCTCATTTTTTGGGAGTTATCCATTATATTTTTTTAATAATGAATTTAGAAATCACAGGAAGGAGCTTAGAACTTGTGAGGAAGGACTTGAATGGGAATATAGATTTTAGGGTATTGTTGATTTAGAAAATCTAACTTGTTGATAGTTATATATAGTACTTACAAATTACCCAATCACTACTTGAATGCAATGCCACACAATTAGTAAGTAATTTTGCATGCCACGTGTTGGTTTGTGATTTGTTTTGAAGTAACACTTGTCATATGATGTTGTTTGAATTGTTCTATAGTTAAATTGGGGCCAATTGACCAAGTTTAATCAAGAGTTTGAGAAATGTTCAACATTCTCCACAAAAATTGGATTCCTTTTTTTAGAGTGTTTTATGTCAATATCGTTTATTCATAAGTGGAAAGTGTCATCTTCACAACCTAAACCATAAATTTAATTTTTTTTTTTAAAAAAAAAGAACATATAAATATTCTTGAAAAATCTTATGAAAATTTTCAACTTTTATCTTGGTGGAATATTTTGCAATTATTTTTTCAATTCTCTCTATATTTTATTTTTTTTTAAGAAAGATACCATAGAATCAAGGGATCAGTAGGTGCACTGAAATATCTCAACTATAGGTTTGAACATTTTTAACACACTCATCATCATGCCCCGATTCAGATATATTCAAAAGTAGTAGTCAATACAAAAAGAGCTGGAGGGAAGCTCATGGATACGAGTGAGAAGCCATAACAAAAAAAAATGCACGGAAGAAGAATTACAAGAAAACAGGAAGATTGAGTGCAATAGTAGTTGGACTGTAGTTTTTGAAAAGTCTTGATATGTGAGTTTGATACTAAGTGTTCTCCGATACGTTGGTGACACTATCATTTGTGGGTTGATTGCGTACATTTGTAGAAGTCATTGTATGAGTAGCATCAGAATTGATGAGACGAAAGTATATCTCTAGTAAATTTGAGATTTTGAAGATGTCCTTTAAAAATGCTATAAAAAGACACCTTTGTTGTAGTATTAGAGACACCAATACCGTATTATATTTTATTTCTTCCTATAAATAATTTTAGTATTAAGTTACATGTAATTATTTTAATTAAGTACAATATACTAGAATCCTACCTTTTGCAATTTCATTGTTTTTCTTGCAATATCTCCATAATTTTGTTTGAGCCACCATTTTCAATAGTAATGAAAGATTTCTAGGAACTTATAGATTTCTACAAGTTTCACTTCTTTAATTCCATTTTTATTCTTCTTTTTGCATGCTATACATTTTTTGTTTTATTCAAACCATATAGTATAATATTATTTCTATTTATCTATTTCATTTTATTTTATTTATTTATTTTCGTAGAAAGAACAACACAAACAAAAATAACTACAATATTACATATCGAGCTAAACCCAACGTAAATCGCTCAGGGTAAAGAATTTAAAGAATGGTAGACTCTCGATCCTGCAACTGTTTATGAGGAACACAATGAGCATGCAAAACTCGCTGCCTCTTTCCTTGACCTCACCAATAAAGAAAAAGATTTCAGAAATATCAACTGCTTCGTTATTCAATAATTGCTTCAAGAATTTTTACATCTTTATAATAGGAGATAAACTTCGAACCAGCAAGAAGAACCCGCCCTAAATTTAAGAAATATCAGATCTTAAATTTGTCGTAGTATTTAAATTTGTTTGTTAAGGTGTAATATTTTGAATTTGTGTTTTAAAAAAATATAATATATATTTTGATTTTTTTGTAATAATTTATTTTATTTTGTTTGTTTTCCCAATTTTAGATGAGTTGTTAGTGTTTTGGCTTTAAATATGGGGGTTCACCCTCATCCAAGATTATAACATTTTCATATCTATATTCATCAGTTGTGTTTAATGGAGAAGTTAGAATGTAAAAGGAGGATTATGAATATAAATTGGGGTCCGGAGCTTCCGCCCAATATTGTTAAGGTAATATTCTCCAAACTTACTATTTGCAATTTGCCAATTTGTAGGCTCGTATGTAAAACTTGGAATCATCTAGTTTTAAATTACGCTTCATCTCTTAAATTTGTTCCAAATGTTTTTCTTGTTAGTACCTTTCTTGTTAGCACCTACGATATCCTCTTCAGTCGCAATTGCAATTGTTATCTTCGTTGTTTTCCTTCTTTTAAGTGCAATCCCAAGATGCATTGTCTTGATATCGATACAATGAGTTACGTTGCCTCATATGGGTTTGAGAACGATGATTGGCCTAAAATCGAAATTTTCAATTCCTGCAATGGATTGTTGTATATTTACAAATTTAGTGATGACAATTTTTGCAACGGCATATTAAATTTGATGACTAACGAGTTCTTCAAACTACCTCAACCTAAAGTAAAAAATAAGAATATCCATTGCGTCTACGGATTTGGTTTTAGTCGTAAGACGAAGCGGTACAAATTGTTCAAAGTTATCCACGAACAAGAAGACTCTCATTCCATGATGGATAGGAGTGTTCACGGTTCGGTTCGGTTTGAGGTCAAAATCGAACCGAACCGAATAAAATTGAGAATGTAATATATAGAATCGAACCGAACCGTTTGTTCGGTTCGGTTTTGCGGTTTAACCTCTTTTTTTAATTATATTTTTTATAATTCAAGTGTTTCCTCTTTTTGTCTTGTCCATGCCAAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGTTTNAAATAAGAATATCCATTGCGTCTACGGATTTGGTTTTAGTCGTAAGACGAAGCGGTACAAATTGTTCAAAGTTATCCACGAACAAGAAGACTCTCATTCCATGATGGATAGGAGTGTTCACGGTTCGGTTCGGTTTGAGGTCAAAATCGAACCGAACCGAATAAAATTGAGAATGTAATATATAGAATCGAACCGAACCGTTTGTTCGGTTCGGTTTTGCGGTTTAACCTCTTTTTTTAATTATATTTTTTATAATTCAAGTGTTTCCTCTTTTTGTCTTGTCCATGCCAAGTGTTTTTTTTTTTTTTTTTGTTTACTTTTTCTAAGTATAATTTTAAATTCAATTGATCAATGATTCAATGTATTTAAATTAATTTTTGCATAAATATATTTTTGACAATCAATTTTGAAATTTCAAAACACAATATAAAAATATATTTAGAATACTACTAATGTAATTATATTTAGTAATACTAATAGTTCAACAACAAAAGTCCAAGACAACAATAAACCTACAAATTTCAAAGTCCAATCTTAAAATACTACATCCACAGGCCACAAACAACTAAAGTCCAATCTTAAAATTATTACAACCATAAACAACTAAAGTCTAATCTTAAAATTACTACCATAGTCCATAACATAAAAGTTCCAAAGTCCAGATGACCACATTCAAAGTTTTAAGTTACATAAATTAGAACCAAACTTGTTCAAACCACCTTCTCCTTCTCGTTCATCTCCTTCTCATTCTTCTCTTTCTCCTTCTTCTCCTTCTCATTCTTCTCTTTCTCCATCTTCTCCTTGGTTTTTGCCTCTAAACCTACTTTGAAGTCTATAAAAAAATGATAAACATCTTAACATAATAATTATATAAACAATATATTTGAAGTCTAAAAGGAATGTTTTAAAGATATATACCTTCTTCAACAATTACAATATCCTCCAAGAATCTTTGAAGATCAATGCTAATTGGTTTTGAACGTAACCAATTTTGTGCACATACAAGTGCCTCAACTGTTGTTGGAGCTAGCGAGGAACGAAAAGGATCAATTACTCTCCCACTCGTACTGAATGCAGACTCAGAAGCAACTGTGGATACTGGAATTGCCAAAAGATCACGTGCAATTTTGCTAAGAACCTTATATCTAGAAGAATGTCCTTTCCACCAATCTAAGATATCAAAGTTCTCCTCACGTTTGATACGAGACTCCAATAAGTAAATATTAACTTCTGTATCCATAGTTTGGGTATCATCTTCATCCATTTCTTCAAAATCAAAACGAAAAACCTCTGAAGCATTGCTAGTAGTAGTAGATGTAGTCATAAAGCTACTATCATCTTCAATACAACCTGAACCTGAAGATTGACTCTTACTTGCACAATTCTTGGACATGTGAGATGATGAGCTTGTACATGAAGTTGAACCATGATTAACAACTGACAAACTATATTCATTGCACAATTTTCTCAAAACATCCTCCACCTTATTTCCTACTTCTTTTGCCCCATCCATATCAAATAGCTGATTCAAACAATACATAAGAGATTTCATCTTATAACGAGGGTCCAAAATAAAAGCAACATACAAGAGGAAGTTATTTTTCTCACTTTTTCCCCAATACTTATCATACTTCTCTTGTATCTTCATTGTCATTTCACGCAAAAGTAAATTTTCAGGACCAGTGACACTACAATATTTTCTTATGCAATTTTGAATGATGCTAATCTCATAGAAGACCGTATTAGAAGTAACATAAAGAGACCCTGAAAGCCTAATAGTTACTTCATAGAATACAGACAAGAATTTGGTAAATATTCTAGCAATTTTCCAATCTTGGGTGGTTGGTTTACTCTCCTCATTCATGTAGACTGTGTCATAGTCTTCTAACCTTTCAAATGCCTTTTCAAATTTTATAGCTGCATCAAGCATCAAATATGTAGAATTTTATCTAGTTTGAACATCAAGACACAACATACTCTTACTAGATATGTTCTCATCTTCAATACACTTCTTAAATTTAGCAAGTCTAGCAGGAGAAGACCTAACAAACCTCACAGCATTTCGAATTCGAATTAATGAATCATTCACATCTTTCAAGCCATCACAGACAATTAAATTCAATATATGTGCACAACATCTGACATGCAAGAACTCACCATTCAACACCAACCCATGTTTAAAACGCTTCTTTAGGTAAGCAATGACGGTATCATTTGACGAAGCATTATCAACAGTTAATGTCAAAACTCGTTCAATACCCCACTCTTTCAAACATTTCTCAACCTCTTTTCCTATTGTCTCCCCTCTATGGTTTTCAATCTGAGAGAAACTAATAATTCTCTTATGTAGCTTCCAATTTCTATCAATAAAGTGTGCAGTCAAAACCATGTAATTAATATTTTGAATCGATGTCCAAGTATCAGTCGTAAGTGAGACTCTATATCCTTCATCCACAACAATATCCCTCAATTGTTCTTTCAAGGTAGCATATATTACCAAAATATCCCTAGCAATTGTAGTTCGGGAAGGAATAACAAAATTTGGTTCTACCAACATCAATGTCCCTTCCACAAACCTCCTAAATCCCTCATTCTCCACAAATTTAAATGACAACTCATCAATTATGATCATCTCAGCAATTAGTCTTCGAGCATTCTCAATAGTAAACATCTTATAGTTAAGTGATGCTGTATTACCACCTCCACCACTCCCTTTATTCTTAAACAACTTAGTTTGAGTTATATCTAACTTACTGTTTTTCATTTGATACAGATTTTTTTACAGTAATTTTCAAGATGCATTCTCATAGTTGAATTTCCATTCCTTCTTGGATGACACGCATACACCATACCACAATAATTACATTTAGCATGTGGATCATCATCACTATATTCAGAGCATCTAGTAAAGTGATCTCATACCATAGATGTATTTTTCCTCTTTTTTCGAGCTTGTGGTTGGAGTGTTGGACTTGATGATGCCGATGGTGGATGCATCTCAACAACATCATCATTTTCGTTCACACTAGAACAGTTGTTGCTCGTGCTCTTGCTATTACTGTTGATGCTTTTACTCGTCATGGTGTTGTGCTACTGCCTACAAAATATATAAATTTCAATGAAACTTTATCTTCAAAACTTTCAATGAAAATGAAAATGAAAGATTTTGTTACCTTGTCGGCGATATCCGATCTGAGAAGTGAGAGATTGAGACAGATTAGAGATCGATCTAACGAAGTGAGTGAGAGATTGAGAGAAATCAGGCCCAGATCTAGAGCGACGTTGAGTGTAGGCTGCCGTGGGTTGCTGTGTGGGCTGTCGTAGGTTGCTGGGCTCGTCGGATGGGCTGCCGTGGGATGGGCTAGAGCGACATCGGATGGGCTGCCTGCTGGGTCTGATCGCCATCGACGATGTGGTGACTGTGAGGGGCTGGTCGCCGTCGACGATGTGGTGACTGTGAGGGGTTGGTCGCCGTCGACGATGTGGTAG

mRNA sequence

ATGAAAATCACAGGAAGGAGCTTAGAACTTGTGAGGAAGGACTTGAATGGGAATATAGATTTTAGGTTAAATTGGGGCCAATTGACCAAAAAGAACAACACAAACAAAAATAACTACAATATTACATATCGAGCTAAACCCAACTTGTGTTTAATGGAGAAGTTAGAATGTAAAAGGAGGATTATGAATATAAATTGGGGTCCGGAGCTTCCGCCCAATATTGTTAAGGTAATATTCTCCAAACTTACTATTTGCAATTTGCCAATTTGTAGGCTCGTATGTAAAACTTGGAATCATCTAGTTTTAAATTACGCTTCATCTCTTAAATTTGTTCCAAATGTTTTTCTTGTTAGTACCTTTCTTGTTAGCACCTACGATATCCTCTTCAGTCGCAATTGCAATTGTTATCTTCGTTGTTTTCCTTCTTTTAAGTGCAATCCCAAGATGCATTGTCTTGATATCGATACAATGAGTTACGTTGCCTCATATGGGTTTGAGAACGATGATTGGCCTAAAATCGAAATTTTCAATTCCTGCAATGGATTGTTGTATATTTACAAATTTAGTGATGACAATTTTTGCAACGGCATATTAAATTTGATGACTAACGAGTTCTTCAAACTACCTCAACCTAAAGTAAAAAATAAGAATATCCATTGCGTCTACGGATTTGGTTTTAGTCGTAAGACGAAGCGAACAGTTGTTGCTCGTGCTCTTGCTATTACTGTTGATGCTTTTACTCGTCATGGTGTTGTGCTACTGCCTACAAAATATATAAATTTCAATGAAACTTTATCTTCAAAACTTTCAATGAAAATGAAAATGAAAGATTTTGTTACCTTGTCGGCGATATCCGATCTGAGAAGTGAGAGATTGAGACAGATTAGAGATCGATCTAACGAAGTGAGTGAGAGATTGAGAGAAATCAGGCCCAGATCTAGAGCGACGTTGAGTGTTGCTGGGCTCGTCGGATGGGCTGCCGTGGGATGGGCTAGAGCGACATCGGATGGGCTGCCTGCTGGGTCTGATCGCCATCGACGATGTGGTGACTGTGAGGGGCTGGTCGCCGTCGACGATGTGGTGACTGTGAGGGGTTGGTCGCCGTCGACGATGTGGTAG

Coding sequence (CDS)

ATGAAAATCACAGGAAGGAGCTTAGAACTTGTGAGGAAGGACTTGAATGGGAATATAGATTTTAGGTTAAATTGGGGCCAATTGACCAAAAAGAACAACACAAACAAAAATAACTACAATATTACATATCGAGCTAAACCCAACTTGTGTTTAATGGAGAAGTTAGAATGTAAAAGGAGGATTATGAATATAAATTGGGGTCCGGAGCTTCCGCCCAATATTGTTAAGGTAATATTCTCCAAACTTACTATTTGCAATTTGCCAATTTGTAGGCTCGTATGTAAAACTTGGAATCATCTAGTTTTAAATTACGCTTCATCTCTTAAATTTGTTCCAAATGTTTTTCTTGTTAGTACCTTTCTTGTTAGCACCTACGATATCCTCTTCAGTCGCAATTGCAATTGTTATCTTCGTTGTTTTCCTTCTTTTAAGTGCAATCCCAAGATGCATTGTCTTGATATCGATACAATGAGTTACGTTGCCTCATATGGGTTTGAGAACGATGATTGGCCTAAAATCGAAATTTTCAATTCCTGCAATGGATTGTTGTATATTTACAAATTTAGTGATGACAATTTTTGCAACGGCATATTAAATTTGATGACTAACGAGTTCTTCAAACTACCTCAACCTAAAGTAAAAAATAAGAATATCCATTGCGTCTACGGATTTGGTTTTAGTCGTAAGACGAAGCGAACAGTTGTTGCTCGTGCTCTTGCTATTACTGTTGATGCTTTTACTCGTCATGGTGTTGTGCTACTGCCTACAAAATATATAAATTTCAATGAAACTTTATCTTCAAAACTTTCAATGAAAATGAAAATGAAAGATTTTGTTACCTTGTCGGCGATATCCGATCTGAGAAGTGAGAGATTGAGACAGATTAGAGATCGATCTAACGAAGTGAGTGAGAGATTGAGAGAAATCAGGCCCAGATCTAGAGCGACGTTGAGTGTTGCTGGGCTCGTCGGATGGGCTGCCGTGGGATGGGCTAGAGCGACATCGGATGGGCTGCCTGCTGGGTCTGATCGCCATCGACGATGTGGTGACTGTGAGGGGCTGGTCGCCGTCGACGATGTGGTGACTGTGAGGGGTTGGTCGCCGTCGACGATGTGGTAG

Protein sequence

MKITGRSLELVRKDLNGNIDFRLNWGQLTKKNNTNKNNYNITYRAKPNLCLMEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHCLDIDTMSYVASYGFENDDWPKIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIHCVYGFGFSRKTKRTVVARALAITVDAFTRHGVVLLPTKYINFNETLSSKLSMKMKMKDFVTLSAISDLRSERLRQIRDRSNEVSERLREIRPRSRATLSVAGLVGWAAVGWARATSDGLPAGSDRHRRCGDCEGLVAVDDVVTVRGWSPSTMW
Homology
[Close]
BLAST of Lsi03G002090 vs. ExPASy TrEMBL
Match: A0A0A0KSJ2 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G643290 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 8.6e-61
Identity = 120/191 (62.83%), Postives = 151/191 (79.06%), Query Frame = 0 

Query: 52  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKFV 111
           MEKLECKR   NIN G +LPPN+V+VI  KLTI +LP CRLV +TWNHL+LNYASS KF+
Sbjct: 1   MEKLECKR---NINLGLQLPPNVVEVILPKLTISDLPACRLVSRTWNHLILNYASSSKFI 60

Query: 112 PNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHCLDID-TMSYVASYGFENDDW 171
           PN+     FL ++Y+I +SRNCNC   C P+FKCNPKM+C+DI+ T + +AS+ F+N+DW
Sbjct: 61  PNL-----FLAASYEIHYSRNCNCNPHCRPTFKCNPKMYCIDINRTNNLIASFVFDNNDW 120

Query: 172 P-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKL-PQPKVKNKNIHCVYGFGFSR 231
           P KI+I NSCNGLLYI+K  D+NFCNGILN MTNEFF L  QPKVKN++I C YGFGF+ 
Sbjct: 121 PYKIKILNSCNGLLYIHKVGDENFCNGILNPMTNEFFILSTQPKVKNEDISCFYGFGFNL 180

Query: 232 KTKRTVVARAL 240
           KTK+  + +A+
Sbjct: 181 KTKQYKLFKAI 183

[Close]
BLAST of Lsi03G002090 vs. ExPASy TrEMBL
Match: A0A1S3CB99 (F-box protein At3g07870-like OS=Cucumis melo OX=3656 GN=LOC103498749 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.4e-41
Identity = 101/183 (55.19%), Postives = 130/183 (71.04%), Query Frame = 0 

Query: 52  MEKLECKRRI-MNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKF 111
           ME LE K+RI MNIN    LPP+IV+ IFSKL+I NLP CR+VCKTWN+LVL YASS KF
Sbjct: 1   MEILETKKRIPMNINL--RLPPHIVRAIFSKLSISNLPTCRVVCKTWNNLVLEYASSTKF 60

Query: 112 VPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHCLDIDT-MSYVASYGFENDD 171
           +P     +T  +S  D + +     Y+    +  CNPK+HC+DID+  SYVAS+GFE  D
Sbjct: 61  LP----TTTLFLSMADEISN-----YIPFKSTPWCNPKIHCVDIDSKTSYVASFGFEG-D 120

Query: 172 WPKIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIHCVYGFGFSRK 231
           W  I I NSCNGLLYI KF+ D+ C GILN MTNEF ++PQP+++  ++H + GFGFS +
Sbjct: 121 WSYITIVNSCNGLLYICKFTFDSLCEGILNPMTNEFMEIPQPEIE-LDVHSI-GFGFSPR 169

Query: 232 TKR 233
           TK+
Sbjct: 181 TKQ 169

[Close]
BLAST of Lsi03G002090 vs. ExPASy TrEMBL
Match: A0A0A0LPC6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014420 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-29
Identity = 85/195 (43.59%), Postives = 108/195 (55.38%), Query Frame = 0 

Query: 52  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKFV 111
           ME +E   R M+I+WG  LPP I K IFSKL I NLP CR VCKTWNHLVL+YASS +  
Sbjct: 24  MENMEMGERRMSIDWGKGLPPLIAKTIFSKLVISNLPSCRFVCKTWNHLVLHYASSTQL- 83

Query: 112 PNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHCLDIDTMSYVASYGFEND--- 171
              FL + FL+ST D    R  N  L       CNPKMHC+++D         F+ +   
Sbjct: 84  --QFLTNAFLLSTSD----RMLNYEL-------CNPKMHCINLDNRQSSNDVDFDLEWEF 143

Query: 172 ----------DWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKN 231
                     DW   I + + CNGL++I K SD  +C GI N MTNEFF++ +    +  
Sbjct: 144 IKSGSLQFYGDWTFMILLAHPCNGLMFISKCSDYTWCQGIFNPMTNEFFQVSEQDTFDDF 202

Query: 232 IHCVYGFGFSRKTKR 233
            H  YGFG S  +K+
Sbjct: 204 YH--YGFGLSAISKQ 202

[Close]
BLAST of Lsi03G002090 vs. ExPASy TrEMBL
Match: A0A0A0LUP7 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G014430 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.0e-29
Identity = 83/193 (43.01%), Postives = 110/193 (56.99%), Query Frame = 0 

Query: 52  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKFV 111
           ME +E   R M+I+WG  LPP I K+IFSKL I NLP CR VCKTWNHLVL+YASS +  
Sbjct: 24  MENMEMGERRMSIDWGKGLPPLIAKIIFSKLVISNLPSCRFVCKTWNHLVLHYASSTQL- 83

Query: 112 PNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHCLDIDT----------MSYVA 171
              FL + FL+ST D + +              CNPKMH +++D           M ++ 
Sbjct: 84  --QFLTNAFLLSTSDQMLNYEL-----------CNPKMHSINLDNTQCSDDVDLEMEFIK 143

Query: 172 SYGFE-NDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIH 231
           S  F+   DW   I + + CNGL++I K SD  +C GI N MTNEFF++ +    +   +
Sbjct: 144 SGSFQFYGDWTFMILMAHPCNGLVFISKCSDYTWCQGIFNPMTNEFFQVSEQDTFDDFYN 200

Query: 232 CVYGFGFSRKTKR 233
             YGFG S  TK+
Sbjct: 204 --YGFGLSPVTKQ 200

[Close]
BLAST of Lsi03G002090 vs. ExPASy TrEMBL
Match: A0A0A0LWG1 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G257290 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.0e-26
Identity = 83/197 (42.13%), Postives = 105/197 (53.30%), Query Frame = 0 

Query: 52  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASS--LK 111
           +E +E   R M IN G  LPP I K IFSKL I +LP CRLV  TWN LVL+YASS  L+
Sbjct: 8   IENMEISERRMTINCGKGLPPLIAKTIFSKLVISDLPSCRLVSNTWNDLVLDYASSTQLQ 67

Query: 112 FVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHCLDIDTMSYVASYGFE--- 171
           F+ N FL+ST           R  N  L       CNPKMHC+++DT      + F+   
Sbjct: 68  FLKNAFLLST---------SDRGLNYKL-------CNPKMHCINLDTRQLSNDFDFDLES 127

Query: 172 ----------NDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKN 231
                     + DW   I +  SCNGL+ I K SD  +C GI N MTNEF ++ +    +
Sbjct: 128 EFIKSASLQFDGDWTYTIIMAGSCNGLMLISKCSDYTWCQGIFNPMTNEFLQVSEHGTFD 186

Query: 232 KNIHCVYGFGFSRKTKR 233
                +YGFGFS  TK+
Sbjct: 188 D--FYLYGFGFSPITKQ 186

[Close]
BLAST of Lsi03G002090 vs. NCBI nr
Match: XP_004141602.1 (F-box protein At3g07870 [Cucumis sativus])

HSP 1 Score: 244.2 bits (622), Expect = 1.8e-60
Identity = 120/191 (62.83%), Postives = 151/191 (79.06%), Query Frame = 0 

Query: 52  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKFV 111
           MEKLECKR   NIN G +LPPN+V+VI  KLTI +LP CRLV +TWNHL+LNYASS KF+
Sbjct: 1   MEKLECKR---NINLGLQLPPNVVEVILPKLTISDLPACRLVSRTWNHLILNYASSSKFI 60

Query: 112 PNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHCLDID-TMSYVASYGFENDDW 171
           PN+     FL ++Y+I +SRNCNC   C P+FKCNPKM+C+DI+ T + +AS+ F+N+DW
Sbjct: 61  PNL-----FLAASYEIHYSRNCNCNPHCRPTFKCNPKMYCIDINRTNNLIASFVFDNNDW 120

Query: 172 P-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKL-PQPKVKNKNIHCVYGFGFSR 231
           P KI+I NSCNGLLYI+K  D+NFCNGILN MTNEFF L  QPKVKN++I C YGFGF+ 
Sbjct: 121 PYKIKILNSCNGLLYIHKVGDENFCNGILNPMTNEFFILSTQPKVKNEDISCFYGFGFNL 180

Query: 232 KTKRTVVARAL 240
           KTK+  + +A+
Sbjct: 181 KTKQYKLFKAI 183

[Close]
BLAST of Lsi03G002090 vs. NCBI nr
Match: XP_008459707.1 (PREDICTED: F-box protein At3g07870-like [Cucumis melo])

HSP 1 Score: 178.7 bits (452), Expect = 9.2e-41
Identity = 101/183 (55.19%), Postives = 130/183 (71.04%), Query Frame = 0 

Query: 52  MEKLECKRRI-MNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKF 111
           ME LE K+RI MNIN    LPP+IV+ IFSKL+I NLP CR+VCKTWN+LVL YASS KF
Sbjct: 1   MEILETKKRIPMNINL--RLPPHIVRAIFSKLSISNLPTCRVVCKTWNNLVLEYASSTKF 60

Query: 112 VPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHCLDIDT-MSYVASYGFENDD 171
           +P     +T  +S  D + +     Y+    +  CNPK+HC+DID+  SYVAS+GFE  D
Sbjct: 61  LP----TTTLFLSMADEISN-----YIPFKSTPWCNPKIHCVDIDSKTSYVASFGFEG-D 120

Query: 172 WPKIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIHCVYGFGFSRK 231
           W  I I NSCNGLLYI KF+ D+ C GILN MTNEF ++PQP+++  ++H + GFGFS +
Sbjct: 121 WSYITIVNSCNGLLYICKFTFDSLCEGILNPMTNEFMEIPQPEIE-LDVHSI-GFGFSPR 169

Query: 232 TKR 233
           TK+
Sbjct: 181 TKQ 169

[Close]
BLAST of Lsi03G002090 vs. NCBI nr
Match: KAE8653057.1 (hypothetical protein Csa_020016 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 8.3e-26
Identity = 83/197 (42.13%), Postives = 105/197 (53.30%), Query Frame = 0 

Query: 52  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASS--LK 111
           +E +E   R M IN G  LPP I K IFSKL I +LP CRLV  TWN LVL+YASS  L+
Sbjct: 8   IENMEISERRMTINCGKGLPPLIAKTIFSKLVISDLPSCRLVSNTWNDLVLDYASSTQLQ 67

Query: 112 FVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHCLDIDTMSYVASYGFE--- 171
           F+ N FL+ST           R  N  L       CNPKMHC+++DT      + F+   
Sbjct: 68  FLKNAFLLST---------SDRGLNYKL-------CNPKMHCINLDTRQLSNDFDFDLES 127

Query: 172 ----------NDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKN 231
                     + DW   I +  SCNGL+ I K SD  +C GI N MTNEF ++ +    +
Sbjct: 128 EFIKSASLQFDGDWTYTIIMAGSCNGLMLISKCSDYTWCQGIFNPMTNEFLQVSEHGTFD 186

Query: 232 KNIHCVYGFGFSRKTKR 233
                +YGFGFS  TK+
Sbjct: 188 D--FYLYGFGFSPITKQ 186

[Close]
BLAST of Lsi03G002090 vs. NCBI nr
Match: XP_011648473.2 (F-box protein At3g07870 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 8.3e-26
Identity = 83/197 (42.13%), Postives = 105/197 (53.30%), Query Frame = 0 

Query: 52  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASS--LK 111
           +E +E   R M IN G  LPP I K IFSKL I +LP CRLV  TWN LVL+YASS  L+
Sbjct: 8   IENMEISERRMTINCGKGLPPLIAKTIFSKLVISDLPSCRLVSNTWNDLVLDYASSTQLQ 67

Query: 112 FVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHCLDIDTMSYVASYGFE--- 171
           F+ N FL+ST           R  N  L       CNPKMHC+++DT      + F+   
Sbjct: 68  FLKNAFLLST---------SDRGLNYKL-------CNPKMHCINLDTRQLSNDFDFDLES 127

Query: 172 ----------NDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKN 231
                     + DW   I +  SCNGL+ I K SD  +C GI N MTNEF ++ +    +
Sbjct: 128 EFIKSASLQFDGDWTYTIIMAGSCNGLMLISKCSDYTWCQGIFNPMTNEFLQVSEHGTFD 186

Query: 232 KNIHCVYGFGFSRKTKR 233
                +YGFGFS  TK+
Sbjct: 188 D--FYLYGFGFSPITKQ 186

[Close]
BLAST of Lsi03G002090 vs. NCBI nr
Match: KAE8648955.1 (hypothetical protein Csa_007901 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 3.9e-23
Identity = 58/94 (61.70%), Postives = 76/94 (80.85%), Query Frame = 0 

Query: 149 MHCLDID-TMSYVASYGFENDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFF 208
           M+C+DI+ T + +AS+ F+N+DWP KI+I NSCNGLLYI+K  D+NFCNGILN MTNEFF
Sbjct: 1   MYCIDINRTNNLIASFVFDNNDWPYKIKILNSCNGLLYIHKVGDENFCNGILNPMTNEFF 60

Query: 209 KL-PQPKVKNKNIHCVYGFGFSRKTKRTVVARAL 240
            L  QPKVKN++I C YGFGF+ KTK+  + +A+
Sbjct: 61  ILSTQPKVKNEDISCFYGFGFNLKTKQYKLFKAI 94

The following BLAST results are available for this feature:
BLAST of Lsi03G002090 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi03G002090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSJ28.6e-6162.83F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G643290 PE=4 ... [more]
A0A1S3CB994.4e-4155.19F-box protein At3g07870-like OS=Cucumis melo OX=3656 GN=LOC103498749 PE=4 SV=1[more]
A0A0A0LPC61.3e-2943.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014420 PE=4 SV=1[more]
A0A0A0LUP73.0e-2943.01F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G014430 PE=4 ... [more]
A0A0A0LWG14.0e-2642.13F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G257290 PE=4 ... [more]
BLAST of Lsi03G002090 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004141602.11.8e-6062.83F-box protein At3g07870 [Cucumis sativus][more]
XP_008459707.19.2e-4155.19PREDICTED: F-box protein At3g07870-like [Cucumis melo][more]
KAE8653057.18.3e-2642.13hypothetical protein Csa_020016 [Cucumis sativus][more]
XP_011648473.28.3e-2642.13F-box protein At3g07870 [Cucumis sativus][more]
KAE8648955.13.9e-2361.70hypothetical protein Csa_007901 [Cucumis sativus][more]
BLAST of Lsi03G002090 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 70..110
e-value: 1.3E-4
score: 31.3
IPR001810F-box domainPFAMPF00646F-boxcoord: 69..101
e-value: 1.6E-6
score: 27.8
NoneNo IPR availableGENE3D1.20.1280.50coord: 61..108
e-value: 2.1E-5
score: 26.3
NoneNo IPR availablePANTHERPTHR47993OS09G0372900 PROTEIN-RELATEDcoord: 73..234
NoneNo IPR availablePANTHERPTHR47993:SF20F-BOX FAMILY PROTEINcoord: 73..234
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 61..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G002090.1Lsi03G002090.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding