Lsi03G001790 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G001790
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr03: 2354234 .. 2354557 (+)
RNA-Seq Expression	Lsi03G001790
Synteny	Lsi03G001790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGTCGTTGTTCGTTTTGGGGAGTAGCAGTGGTGGCGATGATGTTAACAACCATCCTCTGTTCCAGTCATTGCTGCAGAGGTTCGGTTCTGACCAAGCCCAACGCCACCTACGGCGAGGTTACGGCGGAGTTGCTGATCTATGGTGATATAACTCGGTATCTCATGTTTGAAGATTCCAAAGCCAAGACAGGGAAGACCGATAACCCAAACGTCAAATCTTGTGACAAAGGCCCCGGAAACCCCATGGGCGCCTGCGAGGGTACCGCCGATAAGACGAAGCATTGCAACGCGTACGCCGGCGCCCCCGCTTGCAAATAA

mRNA sequence

ATGGGTGGTCGTTGTTCGTTTTGGGGAGTAGCAGTGGTGGCGATGATGTTAACAACCATCCTCTGTTCCAGTCATTGCTGCAGAGGTTCGGTTCTGACCAAGCCCAACGCCACCTACGGCGAGGTTACGGCGGAGTTGCTGATCTATGGTGATATAACTCGGTATCTCATGTTTGAAGATTCCAAAGCCAAGACAGGGAAGACCGATAACCCAAACGTCAAATCTTGTGACAAAGGCCCCGGAAACCCCATGGGCGCCTGCGAGGGTACCGCCGATAAGACGAAGCATTGCAACGCGTACGCCGGCGCCCCCGCTTGCAAATAA

Coding sequence (CDS)

ATGGGTGGTCGTTGTTCGTTTTGGGGAGTAGCAGTGGTGGCGATGATGTTAACAACCATCCTCTGTTCCAGTCATTGCTGCAGAGGTTCGGTTCTGACCAAGCCCAACGCCACCTACGGCGAGGTTACGGCGGAGTTGCTGATCTATGGTGATATAACTCGGTATCTCATGTTTGAAGATTCCAAAGCCAAGACAGGGAAGACCGATAACCCAAACGTCAAATCTTGTGACAAAGGCCCCGGAAACCCCATGGGCGCCTGCGAGGGTACCGCCGATAAGACGAAGCATTGCAACGCGTACGCCGGCGCCCCCGCTTGCAAATAA

Protein sequence

MGGRCSFWGVAVVAMMLTTILCSSHCCRGSVLTKPNATYGEVTAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPACK

Homology

[Close]

BLAST of Lsi03G001790 vs. ExPASy TrEMBL
Match: A0A5D3BR80 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002390 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.0e-23
Identity = 64/108 (59.26%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 1   MGGRCSFWGVA-VVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMF 60
           MG R SF G+  VV MML TI CSSH CRGSVL K NATY  V T ELLIY DI RYLMF
Sbjct: 1   MGSRSSFSGLTMVVVMMLITIFCSSHSCRGSVLIKANATYDVVMTEELLIYPDINRYLMF 60

Query: 61  EDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC 107
               AKTGKT++ NV +C  G GN    C G+    K CNAY G  AC
Sbjct: 61  NGVDAKTGKTNDKNVVACGNGAGNSFAGCSGSTSNKKKCNAYKGPKAC 108

[Close]

BLAST of Lsi03G001790 vs. ExPASy TrEMBL
Match: A0A0A0KUG7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640530 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.2e-20
Identity = 58/109 (53.21%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 1   MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLM 60
           MGGR SF G  + VV +M  TIL SS+ CRGS+L K NAT G V T EL+I  DITRYL+
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60

Query: 61  FEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC 107
           F+ + A TG T +PN+ +C  G GN    C G A+ T+ CNAY G  AC
Sbjct: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109

[Close]

BLAST of Lsi03G001790 vs. ExPASy TrEMBL
Match: A0A0A0KVT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640510 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.1e-20
Identity = 61/108 (56.48%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 1   MGGRCSFWGVA-VVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMF 60
           MG R SF G+  VV +ML TIL SSH CRGSVL K NATY  V T EL+IYGDI R+LM 
Sbjct: 1   MGSRSSFSGLTMVVVVMLITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDINRHLMP 60

Query: 61  EDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC 107
             SKAKTGKT   NV +C  G GN    C G+      C+AY G  AC
Sbjct: 61  SGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC 108

[Close]

BLAST of Lsi03G001790 vs. ExPASy TrEMBL
Match: A0A5D3BNE4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002380 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-19
Identity = 58/109 (53.21%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 1   MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLM 60
           MGGR SF G  + VV +M  TIL SS+ CRGSVL K NATYG V T E++IY DITR+LM
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSVLMKANATYGGVSTTEMIIYHDITRFLM 60

Query: 61  FEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC 107
              SK  TG T  PN+  C+ GPGN  G C G A+  + CN Y     C
Sbjct: 61  PPGSKPVTGNTGEPNIVPCNNGPGNQFGQCGGNANNQQQCNRYDTTKPC 109

[Close]

BLAST of Lsi03G001790 vs. ExPASy TrEMBL
Match: A0A0A0KSJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640520 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-19
Identity = 55/98 (56.12%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 10  VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKT 69
           + VV MML TIL SSH CR SVL K NATYG V TAELLIY D+TRYLM++ + +KTGKT
Sbjct: 16  MVVVVMMLITILYSSHTCRASVLIKANATYGGVMTAELLIYPDVTRYLMYDHADSKTGKT 75

Query: 70  DNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC 107
            +  V  CD G GN    C G++   K CNAY     C
Sbjct: 76  KDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDC 113

[Close]

BLAST of Lsi03G001790 vs. NCBI nr
Match: KAG6578548.1 (hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.5 bits (345), Expect = 6.7e-29
Identity = 66/106 (62.26%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 1   MGGRCSFWGVAVVAMMLTTILCSSHCCRGSVLTKPNATYGEVTAELLIYGDITRYLMFED 60
           MGGRCSFWGVAV A+M+T ILCSS+  R S L + NATYGEV  ELL+  +I R+L F++
Sbjct: 1   MGGRCSFWGVAVAALMVTIILCSSNSSRASSLGRANATYGEVEVELLVRREIARFLNFKN 60

Query: 61  SKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC 107
            K  T KT NP VKSC  GPGNPMG C G+    KHCN+YAGA AC
Sbjct: 61  MKVYTDKTQNPFVKSCGNGPGNPMGDCSGSPTNKKHCNSYAGASAC 106

[Close]

BLAST of Lsi03G001790 vs. NCBI nr
Match: KAA0039430.1 (hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa] >TYK00619.1 hypothetical protein E5676_scaffold169G002390 [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-22
Identity = 64/108 (59.26%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 1   MGGRCSFWGVA-VVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMF 60
           MG R SF G+  VV MML TI CSSH CRGSVL K NATY  V T ELLIY DI RYLMF
Sbjct: 1   MGSRSSFSGLTMVVVMMLITIFCSSHSCRGSVLIKANATYDVVMTEELLIYPDINRYLMF 60

Query: 61  EDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC 107
               AKTGKT++ NV +C  G GN    C G+    K CNAY G  AC
Sbjct: 61  NGVDAKTGKTNDKNVVACGNGAGNSFAGCSGSTSNKKKCNAYKGPKAC 108

[Close]

BLAST of Lsi03G001790 vs. NCBI nr
Match: KGN52519.1 (hypothetical protein Csa_008872 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-19
Identity = 58/109 (53.21%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 1   MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLM 60
           MGGR SF G  + VV +M  TIL SS+ CRGS+L K NAT G V T EL+I  DITRYL+
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60

Query: 61  FEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC 107
           F+ + A TG T +PN+ +C  G GN    C G A+ T+ CNAY G  AC
Sbjct: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109

[Close]

BLAST of Lsi03G001790 vs. NCBI nr
Match: KGN52518.1 (hypothetical protein Csa_007870 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-19
Identity = 55/98 (56.12%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 10  VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKT 69
           + VV MML TIL SSH CR SVL K NATYG V TAELLIY D+TRYLM++ + +KTGKT
Sbjct: 16  MVVVVMMLITILYSSHTCRASVLIKANATYGGVMTAELLIYPDVTRYLMYDHADSKTGKT 75

Query: 70  DNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC 107
            +  V  CD G GN    C G++   K CNAY     C
Sbjct: 76  KDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDC 113

[Close]

BLAST of Lsi03G001790 vs. NCBI nr
Match: KAA0039429.1 (hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa] >TYK00618.1 hypothetical protein E5676_scaffold169G002380 [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-19
Identity = 58/109 (53.21%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 1   MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLM 60
           MGGR SF G  + VV +M  TIL SS+ CRGSVL K NATYG V T E++IY DITR+LM
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSVLMKANATYGGVSTTEMIIYHDITRFLM 60

Query: 61  FEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC 107
              SK  TG T  PN+  C+ GPGN  G C G A+  + CN Y     C
Sbjct: 61  PPGSKPVTGNTGEPNIVPCNNGPGNQFGQCGGNANNQQQCNRYDTTKPC 109

The following BLAST results are available for this feature:

BLAST of Lsi03G001790 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G001790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BR80	6.0e-23	59.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KUG7	6.2e-20	53.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640530 PE=4 SV=1	[more]
A0A0A0KVT8	8.1e-20	56.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640510 PE=4 SV=1	[more]
A0A5D3BNE4	1.4e-19	53.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KSJ4	1.4e-19	56.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640520 PE=4 SV=1	[more]

BLAST of Lsi03G001790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578548.1	6.7e-29	62.26	hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0039430.1	1.2e-22	59.26	hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa] >TYK0061...	[more]
KGN52519.1	1.3e-19	53.21	hypothetical protein Csa_008872 [Cucumis sativus]	[more]
KGN52518.1	2.8e-19	56.12	hypothetical protein Csa_007870 [Cucumis sativus]	[more]
KAA0039429.1	2.8e-19	53.21	hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa] >TYK0061...	[more]

BLAST of Lsi03G001790 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G001790.1	Lsi03G001790.1	mRNA