Lsi03G001770 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G001770
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein SPIRAL1-like 3
Location	chr03: 2341191 .. 2344688 (+)
RNA-Seq Expression	Lsi03G001770
Synteny	Lsi03G001770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGAAGGCGTTCTGCTGGCTTCTTACATTTTGCTCCTTATCTCTTCCTTTTGATCCCATTTTCATTCCGAGAAGATTTCTGAGGTACCCATTTCAATTCTCCACTTTCCCATTTCAGATCCACATTTCGTTAGGGCTTTTTCACCGTTCTAATATTTGTTTGTGTTGTTTTAGTTTACCAATTTGATTTATTTTCTACAATCTTTAATGAAAATGGTGAGATTTGATGAGGTTGAAATGCCATGCGATCCTTGTTTTACTTGGTATTGAATGGATTGAAATGTTGAAATGCTTGTTGCCTGTGAGAGCTTAAAATTATAGCACACTTGTGGGTAATGGACTTGGAAGAAGAAGACTGGGAATATTTGAAGCATGATACGAATAATGCATGGAAATGAATGTTGTCGGAGTATTGATATAATCAAATTTACCTTAACGTTACACTTTTGAGGTGATTGGTGATTTAAGATAGTATGGTACCAGGGTAGAGGTACTTTGTTCGAACATTTTAACTCTTCTTCCCTCCGATTAATATTATTTTCAAGCAGACAAGTAAGAGTGTGTTAAAGTATTGATTTACTCAAATTTACTATAACTCATTGGTTTAAGGTTTTGGGTTGAACGGTGTTTTAATAGAATTTATACTGTGTGGCTTTCAATTTGCCAAGTCTTATAGTATAGGTATAAGTTTATGGAAAATATGCAATAGATTTTGTATTCATAACTTGTTCTTATATCCAAATACTATTAACATTGTAGAGTCGGCTTGGTAGTTTTCAATATGATAGGTATTTTGAAGTAGTTTTTCTTGATACATATTCAGACCATTTTGGTCATTTATAAACAAGAATGATAATGTTCACCAATAAGGCATGCAGAATTGTGGCAACAATTACAGCAATAATACATCAATGATATCTACTATTTAAGGCATGAAATAAGCACAAATTAAAGCAATAATTGATGGGTGTGATTTGGTGTGATTTTCCTCTAATACAATAGAGGCATATTACATATATTGAATTTGCTTGATAGTCTTTATGAAGTGTCTTTGGATTATATGTGCTTAAACATGTATGCATTATCTATATACTATTGCTGTATAGGCCAAATGTATCATATTGCACTTTTTTCTTATGATTTGGTTTCTCTCTGACTTTTCTGGATGTTCTTACCTTTCTGGCATTGCTCCCTGTTGTTTCTTTTGATATATTCTAATAGTTAAACCTGTGATCACTATAATTACAACTGGGTTTTATGTTGTTGTATTACTTGGAGAAACAAAAGGCTTGACAATGAAGCGTGGAGTTAGCAGCGGTGGTGGACAGAGTTCCTTGGGCTACCTGTTTGGAAATGGAGAGCCAGCCAACAATGTGCAAGCTTCGCAGAAATCCAATGGATCTTCTCAGCTGGTCTCTTCTACTTTGCAACCGACCGATAAACAGACAGCTGCTGGCGTTCCAGGGCATCTTACTAACAATTACTATCGAGCGGATGGACAGAACTGTGGCAACTTTATCACGGTTAGGCCCCTTGTTTCACTTGTGTTGGCTTGAAATGTTTGGTGCTGATAGTTATTCACAAGTATTCTGACCTTCCACTATCATATATATAACATCATAACTCATCAGAAGTCATCAAGTTGCAATGCTTGGAGAGGTGGAGAAATCAATCTTCCTCCCTTGACATGGGTTTTTACCCTACTAATTCGTTAACTTTCATAAAAGTAACATTTTAGTCTCTGAACTTTAGTCGGTAAAAAAAGAATTAGTCCTATACTTTCAAATTTGTAACAATTTAGCCCCTGAACTTCAATAAATAACAATTTAGTCTTAGTACTTTATAATTTGTAATGATTTAATTCCTATCATGAAAAGATTTGTAGGTTTTAATAAAAAAGAATTTATTCATGTAGATCAATAAACTAATCCGAGATCAATTTTTTTTATAAACTATAAATAGTAAGTTATTACAATTGACACTTAATTTTGATGAGATTTTTCATGGTAGGGACTAAATTGTTACAAATTTTAAAATATAGGGATTAAATTGTTACTTATTAAAGTTTAGAGACTAAATTGTTACAAATTTGAAAGTATAGGGACTAAATCGTTACTAAAATTAGTTTAGGACTAAATTGGTACTTAAATAAAAGTTTAAGGACTAAAAATGTTTAAGTTGGTGCACTCTGAAATATACATGGTAAGTGATGGGTCAAAAGTGAAGGCAGAGAGGAGATAACTGAGGTCGTACTTGAAGAGAAAAAGGGATGAAACAGTAGGCAGAGAAGAATTCTGGACCAAAAATTAAGGTAGGGAGGAAATTCTTGAAATAATAGGAAGATTGATATGTCTCAGTAAACCAAAGGGTGAAGAAGGCACCGTATCAGTTACATCTACAGGAGCTTCTCACCTGCCAATTTCTTACAACTTCTTCATTGTGGATATAACCAAAGAAAACACTCTGGTAACTATAGATGTGCTCAAGAACATTAGTTATTATATATGAATGAACTTAGATGTTGCAAAGTACTGTTGAGATCCTGAAAATACTACAGAAGCACATCCCTAATTCACAACTAATTTGGATGATACTACAAGAGGTTGTTTGGAGCGTTGAGTTGGTTATAATAGTCCGTGTTTGAGGTATTTTAGTCTGGGTTATAATAGTTTGTGTTTAGGGTGTAGATTATTATAGTCTGGAGATAAGATGGTTATAAAATAGTAAACACGGTAGACAATGAGAGTTTTTAAATAGTTTTTATGTAGCTAAATATGAGTTATAATAATTGAGAACTTCAACTATTACAATGGGAGGCCCAAACATTAAGTGGGCTATAATAGCTCACTCCACCCAAGGCAAGTTAGGGGCCATATGCTGCCTAGCTGTTTTGATATTAGATCTGATGAGAAAGATCCCATTTTCAATCTGAAGTTCTAAACATTGCTTTGTCTAAGTGTTCTGATTCTAAATCAATGGTTAATCCTGGCTTTATTTCAATACTGAATCCTCATTTATTTATAACCATTGGGATGTAAATGTTGGTTTATGTGCGAGCAGGATCGTCCATCAACCAAGGTTCACGCTGCACCTGGTGGCGGATCTTCTCTGGATTTCCTTTTCGGGAACGGTAGGAGCTAAGTTGGTTAAGAACCAAGAAAGACCCTTCAATGGCACTGGCACCTATCGTATTATGTAAACTAGAAAATTGTATCTACCTTTGAAAAGCTTAGAGCTTTTGTCTTTCAAAATTGTGGTATTTTTTTTAATGCACAAGGTTGTTTCCTCATGGTCAGAATTGCTGAAATGCTTGGCTCTTGATGCTTTGTGTTGAAACAAAAATGAGTGATTATTGTATCTTGCTCTGCTCTCAATCTCTTGCATTTGCTGGCTACTGAACTTTTATGATGGGCTCATGCATCCTTTTAAGATTCAGTCCAAATGTATTTGTCTCTATTCAAATTTTAAATTTTAATTTCTGAAATTGCCATTGGGATA

mRNA sequence

TGGGAAGGCGTTCTGCTGGCTTCTTACATTTTGCTCCTTATCTCTTCCTTTTGATCCCATTTTCATTCCGAGAAGATTTCTGAGGTACCCATTTCAATTCTCCACTTTCCCATTTCAGATCCACATTTCGTTAGGGCTTTTTCACCGTTCTAATATTTGTTTGTGTTGTTTTAGTTTACCAATTTGATTTATTTTCTACAATCTTTAATGAAAATGGTGAGATTTGATGAGGTTGAAATGCCATGCGATCCTTGTTTTACTTGGTATTGAATGGATTGAAATGTTGAAATGCTTGTTGCCTGTGAGAGCTTAAAATTATAGCACACTTGTGGGTAATGGACTTGGAAGAAGAAGACTGGGAATATTTGAAGCATGATACGAATAATGCATGGAAATGAATGTTGTCGGAGTATTGATATAATCAAATTTACCTTAACGTTACACTTTTGAGGTGATTGGTGATTTAAGATAGTATGGTACCAGGGTAGAGGTACTTTGTTCGAACATTTTAACTCTTCTTCCCTCCGATTAATATTATTTTCAAGCAGACAAGTAAGAGTGTGTTAAAGTATTGATTTACTCAAATTTACTATAACTCATTGGTTTAAGGTTTTGGGTTGAACGGTGTTTTAATAGAATTTATACTGTGTGGCTTTCAATTTGCCAAGTCTTATAGTATAGGTATAAGTTTATGGAAAATATGCAATAGATTTTGTATTCATAACTTGTTCTTATATCCAAATACTATTAACATTGTAGAGTCGGCTTGGTAGTTTTCAATATGATAGGTATTTTGAAGTAGTTTTTCTTGATACATATTCAGACCATTTTGGTCATTTATAAACAAGAATGATAATGTTCACCAATAAGGCATGCAGAATTGTGGCAACAATTACAGCAATAATACATCAATGATATCTACTATTTAAGGCATGAAATAAGCACAAATTAAAGCAATAATTGATGGGTGTGATTTGGTGTGATTTTCCTCTAATACAATAGAGGCATATTACATATATTGAATTTGCTTGATAGTCTTTATGAAGTGTCTTTGGATTATATGTGCTTAAACATGTATGCATTATCTATATACTATTGCTGTATAGGCCAAATGTATCATATTGCACTTTTTTCTTATGATTTGGTTTCTCTCTGACTTTTCTGGATGTTCTTACCTTTCTGGCATTGCTCCCTGTTGTTTCTTTTGATATATTCTAATAGTTAAACCTGTGATCACTATAATTACAACTGGGTTTTATGTTGTTGTATTACTTGGAGAAACAAAAGGCTTGACAATGAAGCGTGGAGTTAGCAGCGGTGGTGGACAGAGTTCCTTGGGCTACCTGTTTGGAAATGGAGAGCCAGCCAACAATGTGCAAGCTTCGCAGAAATCCAATGGATCTTCTCAGCTGGTCTCTTCTACTTTGCAACCGACCGATAAACAGACAGCTGCTGGCGTTCCAGGGCATCTTACTAACAATTACTATCGAGCGGATGGACAGAACTGTGGCAACTTTATCACGGATCGTCCATCAACCAAGGTTCACGCTGCACCTGGTGGCGGATCTTCTCTGGATTTCCTTTTCGGGAACGGTAGGAGCTAAGTTGGTTAAGAACCAAGAAAGACCCTTCAATGGCACTGGCACCTATCGTATTATGTAAACTAGAAAATTGTATCTACCTTTGAAAAGCTTAGAGCTTTTGTCTTTCAAAATTGTGGTATTTTTTTTAATGCACAAGGTTGTTTCCTCATGGTCAGAATTGCTGAAATGCTTGGCTCTTGATGCTTTGTGTTGAAACAAAAATGAGTGATTATTGTATCTTGCTCTGCTCTCAATCTCTTGCATTTGCTGGCTACTGAACTTTTATGATGGGCTCATGCATCCTTTTAAGATTCAGTCCAAATGTATTTGTCTCTATTCAAATTTTAAATTTTAATTTCTGAAATTGCCATTGGGATA

Coding sequence (CDS)

ATGAAGCGTGGAGTTAGCAGCGGTGGTGGACAGAGTTCCTTGGGCTACCTGTTTGGAAATGGAGAGCCAGCCAACAATGTGCAAGCTTCGCAGAAATCCAATGGATCTTCTCAGCTGGTCTCTTCTACTTTGCAACCGACCGATAAACAGACAGCTGCTGGCGTTCCAGGGCATCTTACTAACAATTACTATCGAGCGGATGGACAGAACTGTGGCAACTTTATCACGGATCGTCCATCAACCAAGGTTCACGCTGCACCTGGTGGCGGATCTTCTCTGGATTTCCTTTTCGGGAACGGTAGGAGCTAA

Protein sequence

MKRGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQLVSSTLQPTDKQTAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS

Homology

[Close]

BLAST of Lsi03G001770 vs. ExPASy Swiss-Prot
Match: B3H4F1 (Protein SPIRAL1-like 1 OS=Arabidopsis thaliana OX=3702 GN=SP1L1 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.4e-24
Identity = 67/112 (59.82%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 1   MKRGVSSGGGQSSLGYLFGNGE---PA-NNVQASQ------KSNGSSQLVSSTLQPTDKQ 60
           M RGVS GGGQSSLGYLFG+GE   PA NN  A         ++ S + V++      KQ
Sbjct: 1   MGRGVSVGGGQSSLGYLFGSGEAPKPAINNAPAPSSETLPISADPSPKHVAAQTVNVTKQ 60

Query: 61  TAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 103
             AG+    TNNY RADGQN GNF+TDRPSTKVHAAPGGGSSLD+LFG G S
Sbjct: 61  IPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGGGS 112

[Close]

BLAST of Lsi03G001770 vs. ExPASy Swiss-Prot
Match: Q9LE54 (Protein SPIRAL1-like 2 OS=Arabidopsis thaliana OX=3702 GN=SP1L2 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.2e-23
Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 1   MKRGVSSGGGQSSLGYLFGNGE-----PANNVQASQKSNG---SSQLVSSTLQPTDKQTA 60
           M RGVS+GGGQSSLGYLFG+GE       N   A  +S+     +Q  ++    + KQ  
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVP 60

Query: 61  AGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 101
           AG+  +  NNY RA+GQN GNFITDRPSTKVH+APGGGSSLD+LFG G
Sbjct: 61  AGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGG 108

[Close]

BLAST of Lsi03G001770 vs. ExPASy Swiss-Prot
Match: Q2R0W8 (Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0629400 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.6e-22
Identity = 59/109 (54.13%), Postives = 70/109 (64.22%), Query Frame = 0


Query: 3   RGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQ---------LVSSTLQPTD----K 62
           RGVSSGGGQSSLGYLFG GE A   +A   +    +          V++   P+     K
Sbjct: 5   RGVSSGGGQSSLGYLFGGGETAPAAKAKPAAAAEKETTPAPVKKAAVAAAASPSAAEKMK 64

Query: 63  QTAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 99
           +  AG+     NNY+RA GQNCGNF+TDRPSTKVHAAPGGGSSL +LFG
Sbjct: 65  EIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAPGGGSSLGYLFG 113

[Close]

BLAST of Lsi03G001770 vs. ExPASy Swiss-Prot
Match: Q2QQ99 (Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0502000 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.6e-22
Identity = 57/101 (56.44%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQLVSSTLQPTDKQTAAGVPGHLT 60
           M RGVSSGGGQSSLGYLFG GE     ++++K     +   S+     K+  AG+     
Sbjct: 1   MGRGVSSGGGQSSLGYLFGGGEAP---KSAEKPAPVQKPAPSSSAEKLKEIPAGIQSSKA 60

Query: 61  NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGR 102
           NNY RA+GQNCGNF+TDRPSTKV AAPGGGSSLD+LF   +
Sbjct: 61  NNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLDYLFSGNK 98

[Close]

BLAST of Lsi03G001770 vs. ExPASy Swiss-Prot
Match: Q9S7P8 (Protein SPIRAL1-like 3 OS=Arabidopsis thaliana OX=3702 GN=SP1L3 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.1e-22
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 3   RGVSSGGGQSSLGYLFGNGEPANNVQASQ------------KSNGSSQLVSSTLQPTD-K 62
           RGV++G  +SSLGYLFG+G+P++   A+                G   + ++T   TD K
Sbjct: 5   RGVNNGVNESSLGYLFGSGQPSSAAAATMGTTTTTTTTTTTDGTGGRPITTTTTTVTDNK 64

Query: 63  QTAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 99
           +T+AGV G   NNY+R++GQNCGNF+TDRPSTKVHAAPGGGSSLD+LFG
Sbjct: 65  KTSAGVRGS-PNNYFRSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFG 112

[Close]

BLAST of Lsi03G001770 vs. ExPASy TrEMBL
Match: A0A6J1JRI1 (protein SPIRAL1-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111487687 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.7e-40
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQLVSSTLQPTDKQTAAGVPGHLT 60
           M RGVSSGGGQSSLGYLFG GEPANNVQAS+K NGSSQ  SST QP DK   AG+PG+ T
Sbjct: 1   MGRGVSSGGGQSSLGYLFGGGEPANNVQASKKPNGSSQPTSSTSQPADKHIPAGIPGNHT 60

Query: 61  NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 103
           NNY+RADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG+S
Sbjct: 61  NNYHRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGKS 102

[Close]

BLAST of Lsi03G001770 vs. ExPASy TrEMBL
Match: A0A6J1GRA9 (protein SPIRAL1-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111456744 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.7e-40
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQLVSSTLQPTDKQTAAGVPGHLT 60
           M RGVSSGGGQSSLGYLFG GEPANNVQAS+K NGSSQ  SST QP DK   AG+PG+ T
Sbjct: 1   MGRGVSSGGGQSSLGYLFGGGEPANNVQASKKPNGSSQPTSSTSQPADKHIPAGIPGNHT 60

Query: 61  NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 103
           NNY+RADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG+S
Sbjct: 61  NNYHRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGKS 102

[Close]

BLAST of Lsi03G001770 vs. ExPASy TrEMBL
Match: A0A6J1BYY1 (protein SPIRAL1-like 3 OS=Momordica charantia OX=3673 GN=LOC111006740 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 7.4e-39
Identity = 88/106 (83.02%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQLVSSTLQPTDKQ----TAAGVP 60
           M RGVSSGGGQSSLGYLFG GEPANNVQASQK NGSSQ  SST Q TDK       AG+P
Sbjct: 1   MGRGVSSGGGQSSLGYLFGGGEPANNVQASQKPNGSSQPTSSTAQATDKNIPAGVPAGIP 60

Query: 61  GHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 103
            + TNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS
Sbjct: 61  ANCTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 106

[Close]

BLAST of Lsi03G001770 vs. ExPASy TrEMBL
Match: A0A5C7HMB5 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015768 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 7.4e-31
Identity = 77/105 (73.33%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNVQASQK-----SNGSSQLVSSTLQPTDKQTAAGV 60
           M RGVS+GGGQSSLGYLFGNGE ANNVQA Q       N   Q  S   QP DKQ  AGV
Sbjct: 80  MGRGVSAGGGQSSLGYLFGNGETANNVQAPQNKGQTADNAPFQKPSVASQPRDKQIPAGV 139

Query: 61  PGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 101
            G+LTNNY RADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG G
Sbjct: 140 HGNLTNNYIRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFGGG 184

[Close]

BLAST of Lsi03G001770 vs. ExPASy TrEMBL
Match: B9IK91 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G095200 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 9.7e-31
Identity = 73/105 (69.52%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQL-----VSSTLQPTDKQTAAGV 60
           M RGVS+GGGQSSLGYLFGNGEPANN   ++    S+ +      +S   P DKQT AG+
Sbjct: 1   MGRGVSAGGGQSSLGYLFGNGEPANNSPVAKNVGNSASISPSPKPASASPPIDKQTPAGI 60

Query: 61  PGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 101
            G+LTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG G
Sbjct: 61  HGNLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFGGG 105

[Close]

BLAST of Lsi03G001770 vs. NCBI nr
Match: XP_038889735.1 (protein SPIRAL1-like 1 [Benincasa hispida])

HSP 1 Score: 183.7 bits (465), Expect = 7.8e-43
Identity = 92/102 (90.20%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQLVSSTLQPTDKQTAAGVPGHLT 60
           M RGVSSGGGQSSLGYLFGNGEPAN+VQ SQKS GSSQLV+ST   TDKQT AG+PGHLT
Sbjct: 1   MSRGVSSGGGQSSLGYLFGNGEPANDVQPSQKSYGSSQLVASTSPLTDKQTPAGIPGHLT 60

Query: 61  NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 103
           NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS
Sbjct: 61  NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 102

[Close]

BLAST of Lsi03G001770 vs. NCBI nr
Match: KAG7033210.1 (Protein SPIRAL1-like 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-39
Identity = 86/102 (84.31%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQLVSSTLQPTDKQTAAGVPGHLT 60
           M RGVSSGGGQSSLGYLFG GEPANNVQAS+K+NGSSQ  SST QP DK   AG+PG+ T
Sbjct: 1   MGRGVSSGGGQSSLGYLFGGGEPANNVQASKKANGSSQPTSSTSQPADKHIPAGIPGNHT 60

Query: 61  NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 103
           NNY+RADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG+S
Sbjct: 61  NNYHRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGKS 102

[Close]

BLAST of Lsi03G001770 vs. NCBI nr
Match: XP_022954496.1 (protein SPIRAL1-like 3 [Cucurbita moschata] >XP_022954504.1 protein SPIRAL1-like 3 [Cucurbita moschata] >XP_022954513.1 protein SPIRAL1-like 3 [Cucurbita moschata] >XP_022990950.1 protein SPIRAL1-like 3 [Cucurbita maxima] >XP_022990951.1 protein SPIRAL1-like 3 [Cucurbita maxima] >XP_022990952.1 protein SPIRAL1-like 3 [Cucurbita maxima] >XP_023538178.1 protein SPIRAL1-like 3 [Cucurbita pepo subsp. pepo] >XP_023538185.1 protein SPIRAL1-like 3 [Cucurbita pepo subsp. pepo] >XP_023538193.1 protein SPIRAL1-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.6 bits (436), Expect = 1.8e-39
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQLVSSTLQPTDKQTAAGVPGHLT 60
           M RGVSSGGGQSSLGYLFG GEPANNVQAS+K NGSSQ  SST QP DK   AG+PG+ T
Sbjct: 1   MGRGVSSGGGQSSLGYLFGGGEPANNVQASKKPNGSSQPTSSTSQPADKHIPAGIPGNHT 60

Query: 61  NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 103
           NNY+RADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG+S
Sbjct: 61  NNYHRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGKS 102

[Close]

BLAST of Lsi03G001770 vs. NCBI nr
Match: KAG6602534.1 (putative methylesterase 11, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.6 bits (436), Expect = 1.8e-39
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQLVSSTLQPTDKQTAAGVPGHLT 60
           M RGVSSGGGQSSLGYLFG GEPANNVQAS+K NGSSQ  SST QP DK   AG+PG+ T
Sbjct: 390 MGRGVSSGGGQSSLGYLFGGGEPANNVQASKKPNGSSQPTSSTSQPADKHIPAGIPGNHT 449

Query: 61  NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 103
           NNY+RADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG+S
Sbjct: 450 NNYHRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGKS 491

[Close]

BLAST of Lsi03G001770 vs. NCBI nr
Match: XP_022134514.1 (protein SPIRAL1-like 3 [Momordica charantia] >XP_022134516.1 protein SPIRAL1-like 3 [Momordica charantia])

HSP 1 Score: 169.5 bits (428), Expect = 1.5e-38
Identity = 88/106 (83.02%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQLVSSTLQPTDKQ----TAAGVP 60
           M RGVSSGGGQSSLGYLFG GEPANNVQASQK NGSSQ  SST Q TDK       AG+P
Sbjct: 1   MGRGVSSGGGQSSLGYLFGGGEPANNVQASQKPNGSSQPTSSTAQATDKNIPAGVPAGIP 60

Query: 61  GHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 103
            + TNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS
Sbjct: 61  ANCTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 106

[Close]

BLAST of Lsi03G001770 vs. TAIR 10
Match: AT1G26355.1 (SPIRAL1-like1 )

HSP 1 Score: 110.9 bits (276), Expect = 6.0e-25
Identity = 67/112 (59.82%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 1   MKRGVSSGGGQSSLGYLFGNGE---PA-NNVQASQ------KSNGSSQLVSSTLQPTDKQ 60
           M RGVS GGGQSSLGYLFG+GE   PA NN  A         ++ S + V++      KQ
Sbjct: 1   MGRGVSVGGGQSSLGYLFGSGEAPKPAINNAPAPSSETLPISADPSPKHVAAQTVNVTKQ 60

Query: 61  TAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 103
             AG+    TNNY RADGQN GNF+TDRPSTKVHAAPGGGSSLD+LFG G S
Sbjct: 61  IPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGGGS 112

[Close]

BLAST of Lsi03G001770 vs. TAIR 10
Match: AT1G69230.1 (SPIRAL1-like2 )

HSP 1 Score: 109.0 bits (271), Expect = 2.3e-24
Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 1   MKRGVSSGGGQSSLGYLFGNGE-----PANNVQASQKSNG---SSQLVSSTLQPTDKQTA 60
           M RGVS+GGGQSSLGYLFG+GE       N   A  +S+     +Q  ++    + KQ  
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVP 60

Query: 61  AGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 101
           AG+  +  NNY RA+GQN GNFITDRPSTKVH+APGGGSSLD+LFG G
Sbjct: 61  AGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGG 108

[Close]

BLAST of Lsi03G001770 vs. TAIR 10
Match: AT1G69230.2 (SPIRAL1-like2 )

HSP 1 Score: 109.0 bits (271), Expect = 2.3e-24
Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 1   MKRGVSSGGGQSSLGYLFGNGE-----PANNVQASQKSNG---SSQLVSSTLQPTDKQTA 60
           M RGVS+GGGQSSLGYLFG+GE       N   A  +S+     +Q  ++    + KQ  
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVP 60

Query: 61  AGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 101
           AG+  +  NNY RA+GQN GNFITDRPSTKVH+APGGGSSLD+LFG G
Sbjct: 61  AGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGG 108

[Close]

BLAST of Lsi03G001770 vs. TAIR 10
Match: AT3G02180.1 (SPIRAL1-like3 )

HSP 1 Score: 104.8 bits (260), Expect = 4.3e-23
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 3   RGVSSGGGQSSLGYLFGNGEPANNVQASQ------------KSNGSSQLVSSTLQPTD-K 62
           RGV++G  +SSLGYLFG+G+P++   A+                G   + ++T   TD K
Sbjct: 5   RGVNNGVNESSLGYLFGSGQPSSAAAATMGTTTTTTTTTTTDGTGGRPITTTTTTVTDNK 64

Query: 63  QTAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 99
           +T+AGV G   NNY+R++GQNCGNF+TDRPSTKVHAAPGGGSSLD+LFG
Sbjct: 65  KTSAGVRGS-PNNYFRSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFG 112

[Close]

BLAST of Lsi03G001770 vs. TAIR 10
Match: AT3G02180.2 (SPIRAL1-like3 )

HSP 1 Score: 104.8 bits (260), Expect = 4.3e-23
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 3   RGVSSGGGQSSLGYLFGNGEPANNVQASQ------------KSNGSSQLVSSTLQPTD-K 62
           RGV++G  +SSLGYLFG+G+P++   A+                G   + ++T   TD K
Sbjct: 5   RGVNNGVNESSLGYLFGSGQPSSAAAATMGTTTTTTTTTTTDGTGGRPITTTTTTVTDNK 64

Query: 63  QTAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 99
           +T+AGV G   NNY+R++GQNCGNF+TDRPSTKVHAAPGGGSSLD+LFG
Sbjct: 65  KTSAGVRGS-PNNYFRSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFG 112

The following BLAST results are available for this feature:

BLAST of Lsi03G001770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B3H4F1	8.4e-24	59.82	Protein SPIRAL1-like 1 OS=Arabidopsis thaliana OX=3702 GN=SP1L1 PE=2 SV=1	[more]
Q9LE54	3.2e-23	56.48	Protein SPIRAL1-like 2 OS=Arabidopsis thaliana OX=3702 GN=SP1L2 PE=2 SV=1	[more]
Q2R0W8	4.6e-22	54.13	Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0629400 ...	[more]
Q2QQ99	4.6e-22	56.44	Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0502000 ...	[more]
Q9S7P8	6.1e-22	53.21	Protein SPIRAL1-like 3 OS=Arabidopsis thaliana OX=3702 GN=SP1L3 PE=1 SV=1	[more]

BLAST of Lsi03G001770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JRI1	8.7e-40	84.31	protein SPIRAL1-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111487687 PE=3 SV=1	[more]
A0A6J1GRA9	8.7e-40	84.31	protein SPIRAL1-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111456744 PE=3 SV=1	[more]
A0A6J1BYY1	7.4e-39	83.02	protein SPIRAL1-like 3 OS=Momordica charantia OX=3673 GN=LOC111006740 PE=3 SV=1	[more]
A0A5C7HMB5	7.4e-31	73.33	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015768 PE=3 SV=1	[more]
B9IK91	9.7e-31	69.52	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G095200 PE=3 ...	[more]

BLAST of Lsi03G001770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889735.1	7.8e-43	90.20	protein SPIRAL1-like 1 [Benincasa hispida]	[more]
KAG7033210.1	1.1e-39	84.31	Protein SPIRAL1-like 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022954496.1	1.8e-39	84.31	protein SPIRAL1-like 3 [Cucurbita moschata] >XP_022954504.1 protein SPIRAL1-like...	[more]
KAG6602534.1	1.8e-39	84.31	putative methylesterase 11, chloroplastic, partial [Cucurbita argyrosperma subsp...	[more]
XP_022134514.1	1.5e-38	83.02	protein SPIRAL1-like 3 [Momordica charantia] >XP_022134516.1 protein SPIRAL1-lik...	[more]

BLAST of Lsi03G001770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26355.1	6.0e-25	59.82	SPIRAL1-like1	[more]
AT1G69230.1	2.3e-24	56.48	SPIRAL1-like2	[more]
AT1G69230.2	2.3e-24	56.48	SPIRAL1-like2	[more]
AT3G02180.1	4.3e-23	53.21	SPIRAL1-like3	[more]
AT3G02180.2	4.3e-23	53.21	SPIRAL1-like3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..56
None	No IPR available	PANTHER	PTHR33403:SF31	PROTEIN SPIRAL1-LIKE 1	coord: 1..99
IPR039613	Protein SPIRAL1-like	PANTHER	PTHR33403	SPR1	coord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G001770.1	Lsi03G001770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043622	cortical microtubule organization
cellular_component	GO:0010005	cortical microtubule, transverse to long axis