Lsi03G001670 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G001670
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr03: 2237418 .. 2238960 (+)
RNA-Seq ExpressionLsi03G001670
SyntenyLsi03G001670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACGTAAATGACTGAGCATGGAGATTGCTGGTCGAGCCATTTCAGGCAAGTTGAATCTTCTGGCCAGAAGTGCCCAATGGAATTTTCGAGTCGATTGCTTGCTAAGAGTGGGCCAATTGGGAGAATGCAAGGAGCTAAGCTGAAGATTTCTCCTTCAAGGTCATATACTGTATTGCAGATAACCCAATCTGCCACTTCTACTGCTTTGTTATTTCTTAAGCAAACTTGAAATATAATTTTCTCTGTCTCTTTGTCGCCAACGCATGCCCAAACCAATCTTTCCGTTCTGGTTGTGGGTACTGATGCTGCTAATTTGATCTCCTCGCTTTTCAGTAAGGTACCTGTTGATATTGAAACTAATCAAAAACTGCTAATCTTCAAGCGTTATGAACAAATTCTATGTTGATAATGTGCCTATTGATTAGATTGTTTCAAATTCTTTATGGGGCTAAGAAAGTGATTTTGTTTGTCTGGCTTGCCTAGTTTAATCTCATAGCTAAGGTTAAGTCAATGAACGACTAAGTTTGACATATGATTGATTTTGTCTGAATAAAAAAACTTGTGGATGCACTCATTAACTTCGATTAATAAACAGTTGAAACCCATCTTACCATCAGAATCAATTAGTTTTTCTTCAATCAGCTTTGGGATGCTAAATTGCATAGCCAACAATGCCGCAGCTGCTGGCCAGAAGGCGACTCGCCGGATTCTCATCTTCTCAGCAACTTCTAGAGCCCACCCAAGATTCTCATCAGCAATAACACTGGTAATTTCATTGCCACCAAATCCATTGATTGTGTTTATCAGCTCTTCTAACTTCATGGGCATGACTTGCAACATTGTTTCAGTTAATTTACCAAGATCGTTTCTATCCTCCCCAGGTTTCATGCCATCAGGGAGTGAAACTAGATGAATATGACCATCCCCTGTATGATTTGTTTCTCCTAGAGCATCCACGACACGTTTGTGATTGTACTCTGTGTTCACGAACGTGATTTCGAACCCATGTTTGGCCAAGCACAAGGAGATTTCCAATAAGGGGATGACATGGCCTTGTGCTGGATAAGGTATGGCCAAGATGTGCCCACTGCCCATTTTGCTTCTGTAATCTAAATTTTACTTTCTTTCCAATGGGTTGCAGCTTCTAAGCTTCAATATATGACTATATATACACAACCACAAATGGAATTGTCTCTGCGTGTATGCGCCAGATTCTTCATTCAACATGTTGCAATTGTTGATACCAAGATAAACAATTGTAAATTTATTTCTCTTTTATGTCTATAGTCTAGCCACTTTGTCATTTTTGTATATGATGGTAAGCTGGCATTGGTTATATCTCATTGTTGTTTATATTCACCATCTACCTTTTGGTATTGGTTTCCAATTTGTTATTGACTGATTCTGTTTAGAAAAGTTTATTAATGTTTTTACTCTCTTGTTTTACTTTCTTTTCTTGGATTTGTATGCTGTATTATTTAAGATTCAGGCAGGCTTAGAGTTCTAATGGCCATGGAGAGTTTAACTCCACAGGAGTGA

mRNA sequence

ATGCAACATTGCTGGTCGAGCCATTTCAGGCAAGTTGAATCTTCTGGCCAGAAGTGCCCAATGGAATTTTCGAGTCGATTGCTTGCTAAGAGTGGGCCAATTGGGAGAATGCAAGGAGCTAAGCTGAAGATTTCTCCTTCAAGGTCATATACTGTATTGCAGATAACCCAATCTGCCACTTCTACTGCTTTCTTTGGGATGCTAAATTGCATAGCCAACAATGCCGCAGCTGCTGGCCAGAAGGCGACTCGCCGGATTCTCATCTTCTCAGCAACTTCTAGAGCCCACCCAAGATTCTCATCAGCAATAACACTGTCTAGCCACTTTGTCATTTTTGTATATGATGGCAGGCTTAGAGTTCTAATGGCCATGGAGAGTTTAACTCCACAGGAGTGA

Coding sequence (CDS)

ATGCAACATTGCTGGTCGAGCCATTTCAGGCAAGTTGAATCTTCTGGCCAGAAGTGCCCAATGGAATTTTCGAGTCGATTGCTTGCTAAGAGTGGGCCAATTGGGAGAATGCAAGGAGCTAAGCTGAAGATTTCTCCTTCAAGGTCATATACTGTATTGCAGATAACCCAATCTGCCACTTCTACTGCTTTCTTTGGGATGCTAAATTGCATAGCCAACAATGCCGCAGCTGCTGGCCAGAAGGCGACTCGCCGGATTCTCATCTTCTCAGCAACTTCTAGAGCCCACCCAAGATTCTCATCAGCAATAACACTGTCTAGCCACTTTGTCATTTTTGTATATGATGGCAGGCTTAGAGTTCTAATGGCCATGGAGAGTTTAACTCCACAGGAGTGA

Protein sequence

MQHCWSSHFRQVESSGQKCPMEFSSRLLAKSGPIGRMQGAKLKISPSRSYTVLQITQSATSTAFFGMLNCIANNAAAAGQKATRRILIFSATSRAHPRFSSAITLSSHFVIFVYDGRLRVLMAMESLTPQE
Homology
[Close]
BLAST of Lsi03G001670 vs. ExPASy TrEMBL
Match: A0A0A0KSG1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638450 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.6e-20
Identity = 73/149 (48.99%), Postives = 84/149 (56.38%), Query Frame = 0 

Query: 1   MQHCWSSHFRQVESSGQKCPMEFSSRLLAKSGPIGRMQGAKLKISPSRSYTV-------- 60
           M  CW    RQVESSGQKCP+EFSSR LAKSGPIGR++GAKLKIS SR+++V        
Sbjct: 1   MAMCW---IRQVESSGQKCPIEFSSRFLAKSGPIGRIRGAKLKISASRNFSVSLSPIHAQ 60

Query: 61  ------LQITQSAT------------------------------STAF----FGMLNCIA 102
                 +  T SA                               S +F    FGMLN IA
Sbjct: 61  TNFSVLVMGTDSANLMSSLFSKKTCWMDSSTLIKIQLKPFLPSESISFCSIKFGMLNSIA 120

[Close]
BLAST of Lsi03G001670 vs. ExPASy TrEMBL
Match: A0A0A0KVT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638460 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.3e-07
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 65  FGMLNCIANNAAAAGQKATRRILIFSATSRAHPRFSS 102
           FGMLNCIANNAAAAGQKATR I IF+ATS+AHPRF +
Sbjct: 113 FGMLNCIANNAAAAGQKATRGIFIFAATSKAHPRFQA 149

The following BLAST results are available for this feature:
BLAST of Lsi03G001670 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi03G001670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSG17.6e-2048.99Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638450 PE=4 SV=1[more]
A0A0A0KVT14.3e-0783.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638460 PE=4 SV=1[more]
BLAST of Lsi03G001670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi03G001670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G001670.1Lsi03G001670.1mRNA