Lsi03G001580 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G001580
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Membrane-anchored ubiquitin-fold protein
Location	chr03: 2186944 .. 2189536 (-)
RNA-Seq Expression	Lsi03G001580
Synteny	Lsi03G001580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGAGTGGGAGATCAATTGGAGATCAAGTTTCGATTGAACGATGGATCTGATATTGGCCCCAAAACCTTCCCTGCTGCCACAAGCATAGCAACCTTGAAAGAAAGCGTTCTTGCACAATGGCCAAGAGGTGTGTGAAATTTGAACTTCTTTCTCTTAGTTTTGGCTTTTGGGGGTGGTTGATTTTGCTTGAATTCCTATCCTATGCTGATCTTGTAACTCTGTTTGTAATTGAAGTATTTAAGTTTAAACATTTTCAGCATATTGGCATCTGTTTCGTCATTTACTCAAAATCAGAGAAAATCTTTAGACGAAACACAACACAAGTAAAGCTCTGATCTGATGTAGAACTCTGCATTTTCTTCGTTCTTGCTGTTGCCATTTCAGAAGAGACACTACACCCTGATCGGGGGAAAACGTTTAACAATCCGTTTCTGGTGCATAAAAATCCATGATATTTGTTTTATGTTGGATCTTCTATAAGCATTTTGAACTTATTGATTAGATTTTATGCCTCTTTGAAAGAGATTCTATTAGAGAATGTCGGATTCTTTGTCTGGTTTCATCTGATCACATTCTTAACAGAAGAGTGCTCTTTGTTTTCCATTTACTTTGGATCTTCTGGTTTCATTCCTTCAAGTTGCAATATGTCTCTGAAATCATTCATTTTCCTAAATCATATGCAGTGGAAAACTCTTGGATTTGAACTTGATTAGGAAGCCTTTCTAGGCCTTTTACACTTACCAATGCCTTCATTCGTTTGATTGCTTTTCCACCCCTTGTACCCATCATATTTCTTTGTCTATGCTCTCAGACCCTGATCAACGTGGTTTCTTGTTTGCTATAGCTTGAATCTGTGATTGACATATATATAGACTCCTTATTGTTTTTTCCTGAGGCAGTAAATCTTGTAATATCATTATACAGATGCATTTATCAATACGATTTAGTGTCATCCACATTGTCCTCCCAACACTTTCACCAGATCTTAGATTAATGAGAATTTTTATATTAGGCAATGGTAATAAGGATGATATTTCTGTTGCATTAACTCTGGCTAGATTTTAAATGTTTCTTTTTGTTACCATCCTATTGTGAATGTAGGACGAGTAATCACGATTATTATTGTTTCTTCTGAGGTACGAGTAATCACGATTATTTGTTTGAGCAGAAAAGGAGAATGGTCCAAGAACAGTTAAGGATGTCAAGTTAATAAGTGCAGGAAAAATCTTAGAGAATAACAGAACACTTAATGATTGCAGAAGCCCTCTATATGACATTCCTGGCACTGTGACAACCATGCATGTTGTTATCCAACCACCAAGTTTGGAGAAAGGTATAATCTGTTCTATAAAAGTTTATATTATCAATTACTTACGATAGAATGAATATTGCTTTTTGACATCTCACTTGGATTTGTCTGGAATTATCTTTTGCTGTATTTTGAAGTTTCCTTTGATTCCACTTCAATTGCTTGATAAAGATTTAAAATACCCGGCTAGACTCTTCCTTTGGGATAAACAATAGCTGGATGATTCTGCTATTTGGGGATAACCAATTACTGTTCCTTAGAGTTGTCTTCTTGAACATAAAACTATTCAGAACTGCTGAAGTTCAGCTGGATGGGTTTTATCTGTCAAACTTACACTTACAAAGGTTTATAATAGATGTGCCTAGATGTCTTTGCATTGAGCATTGGTATGCGTATATGTATATGCAATTATTCTTATGTTTGCTCAAAGGCTGTGGAAAATATAATGGGAAGAAGCACAGCATCAGGTCAATTGTTTTTTTTAGTTTTGAAGTAGCTTAGAATACATATGTTGAAAGATAAGCTCTCAACAAAAGGCACCTGTTGTGGCTGTTACTGCATATTGAAGCCAAGCCTATTGAAACATTGAGGTTCAAATGGGATTACTAATGGAAGTTATCTTCTTTGCCTGAGCAGAAAAGAAAGCTGGAGACCAAGCAACACAAAACAAGTGTGTTTGTGTTATACTATAAACGGAACTTGTGGAAGTTCTCGACGCCATTTTTGAGTGCATAAAGATAGCAAATTTTCCTTTTAAAAGTTCTGATGCCAATAACAGCTTGGAATCAGTTGAAGAAGCTTATTCTGGAGCTTGTGTTATTGTTTTCACAGTAGTAAAAGAAAAAGAAAAGAAAAAGAAACAGACAGAGGTAGTAAAGATGGCGAAGACGATGGGATATTTATCGACACAAGCCAGTTGTAGATCAGATCCATGGCAGTTGAATGTCTGGTGATCTATTATGAAGGGTTGTTGCCTTTTCAACATCCATTGTTAGCTTCATTTGTTGTTTAGATTGATTTTGTGTAACTCTTCCGCTATCTCAAATGTTTGTGATGAAAGCTTTATATACTTGAAGTTGCAGTTAGCCATTTACCTTTTTTTAAAATATTCTTCAAACTGTATCACCATTTGGGTTTAGGCCCCAACTTCATGATACTTTTCCCCCTCTTCCCAAACAAGGAATGATAATATTTCTTTGATTTTCTTTCTGGTATGCTTGAATGAAAACTAAATGGTGAGCCAATTTCAACATTATAATATAATTATAATTTTATCTT

mRNA sequence

ATGGCTGGAGTGGGAGATCAATTGGAGATCAAGTTTCGATTGAACGATGGATCTGATATTGGCCCCAAAACCTTCCCTGCTGCCACAAGCATAGCAACCTTGAAAGAAAGCGTTCTTGCACAATGGCCAAGAGGTGTAAGCCCTCTATATGACATTCCTGGCACTGTGACAACCATGCATGTTGTTATCCAACCACCAAGTTTGGAGAAAGAAAAGAAAGCTGGAGACCAAGCAACACAAAACAAGTGTGTTTGTGTTATACTATAAACGGAACTTGTGGAAGTTCTCGACGCCATTTTTGAGTGCATAAAGATAGCAAATTTTCCTTTTAAAAGTTCTGATGCCAATAACAGCTTGGAATCAGTTGAAGAAGCTTATTCTGGAGCTTGTGTTATTGTTTTCACAGTAGTAAAAGAAAAAGAAAAGAAAAAGAAACAGACAGAGGTAGTAAAGATGGCGAAGACGATGGGATATTTATCGACACAAGCCAGTTGTAGATCAGATCCATGGCAGTTGAATGTCTGGTGATCTATTATGAAGGGTTGTTGCCTTTTCAACATCCATTGTTAGCTTCATTTGTTGTTTAGATTGATTTTGTGTAACTCTTCCGCTATCTCAAATGTTTGTGATGAAAGCTTTATATACTTGAAGTTGCAGTTAGCCATTTACCTTTTTTTAAAATATTCTTCAAACTGTATCACCATTTGGGTTTAGGCCCCAACTTCATGATACTTTTCCCCCTCTTCCCAAACAAGGAATGATAATATTTCTTTGATTTTCTTTCTGGTATGCTTGAATGAAAACTAAATGGTGAGCCAATTTCAACATTATAATATAATTATAATTTTATCTT

Coding sequence (CDS)

ATGGCTGGAGTGGGAGATCAATTGGAGATCAAGTTTCGATTGAACGATGGATCTGATATTGGCCCCAAAACCTTCCCTGCTGCCACAAGCATAGCAACCTTGAAAGAAAGCGTTCTTGCACAATGGCCAAGAGGTGTAAGCCCTCTATATGACATTCCTGGCACTGTGACAACCATGCATGTTGTTATCCAACCACCAAGTTTGGAGAAAGAAAAGAAAGCTGGAGACCAAGCAACACAAAACAAGTGTGTTTGTGTTATACTATAA

Protein sequence

MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGVSPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL

Homology

[Close]

BLAST of Lsi03G001580 vs. ExPASy Swiss-Prot
Match: Q8LCS8 (Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana OX=3702 GN=MUB2 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.5e-21
Identity = 60/119 (50.42%), Postives = 68/119 (57.14%), Query Frame = 0


Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MA V DQLEIKFRLNDGSDIGPK FP AT++ATLKE+V+AQWPR                
Sbjct: 1   MAEVKDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKK----AGDQATQNKCVCV 87
                          SP+ +  G VTTMHV+IQ    EKEKK     GD   QNKCVC+
Sbjct: 61  AGRILENNKTVGDCRSPVGNFSGAVTTMHVIIQHQVTEKEKKKKKPKGD-LKQNKCVCL 118

[Close]

BLAST of Lsi03G001580 vs. ExPASy Swiss-Prot
Match: Q9MAB9 (Membrane-anchored ubiquitin-fold protein 1 OS=Arabidopsis thaliana OX=3702 GN=MUB1 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-20
Identity = 52/117 (44.44%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MA V +QLEIKFRL DGSDIGPK FP AT+++ LKE+V+++WPR                
Sbjct: 1   MAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SP+ ++ G VTTMHV+IQ P  EKEKK       NKCVC ++
Sbjct: 61  AGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKEKKPKGDPKMNKCVCSVM 117

[Close]

BLAST of Lsi03G001580 vs. ExPASy Swiss-Prot
Match: Q6Z8K4 (Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=MUB3 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-14
Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGVS------------- 60
           MAG  + +E+KFRL DG+DIGP  +  +T+++ LKE +LA+WP+                
Sbjct: 1   MAGGKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLIN 60

Query: 61  ----------------PLYDIPGTVTTMHVVIQPPSLEK--EKKAGDQATQNKCVCVIL 89
                           P+ ++PG V TMHVV++PP  +K  EK+  +   QN+C C IL
Sbjct: 61  AGRILENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119

[Close]

BLAST of Lsi03G001580 vs. ExPASy Swiss-Prot
Match: Q75GT2 (Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MUB1 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-14
Identity = 45/117 (38.46%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 3   GVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRG----------------- 62
           GV +Q EIKFRL DG+DIGPK +PAA+++ATLKES++AQWP+                  
Sbjct: 4   GVQEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLINAG 63

Query: 63  ------------VSPLYDIPGTVTTMHVVIQPPSLEKE--KKAGDQATQNKCVCVIL 89
                        SP+ D  G +TTMHVV++ P+ +K+  K    +    +C C I+
Sbjct: 64  KILENNKTLSECKSPICDFSG-LTTMHVVVRAPTSDKQSNKIVAKKPKDFRCGCSIM 119

[Close]

BLAST of Lsi03G001580 vs. ExPASy Swiss-Prot
Match: Q8GWJ6 (Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana OX=3702 GN=MUB6 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-14
Identity = 40/119 (33.61%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGVS------------- 60
           MAG  D +E+KFRL DG+DIGP  +  + ++++LKE +++QWP+                
Sbjct: 1   MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLIN 60

Query: 61  ----------------PLYDIPGTVTTMHVVIQPPSLEK--EKKAGDQATQNKCVCVIL 89
                           P+ ++PG + TMH+V++ P+L+K  EK   D   +N+CVC IL
Sbjct: 61  AGKILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDKKSEKLQNDPPMKNRCVCTIL 119

[Close]

BLAST of Lsi03G001580 vs. ExPASy TrEMBL
Match: A0A6J1BXN4 (Membrane-anchored ubiquitin-fold protein OS=Momordica charantia OX=3673 GN=LOC111006411 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.6e-36
Identity = 83/117 (70.94%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKES+LAQWPR                
Sbjct: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESILAQWPREKENGPRTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SPLYDIPG+VTTMHVVIQPPSLEKEKKAGDQ+TQNKCVCVIL
Sbjct: 61  AGKILENNRTLNDCRSPLYDIPGSVTTMHVVIQPPSLEKEKKAGDQSTQNKCVCVIL 117

[Close]

BLAST of Lsi03G001580 vs. ExPASy TrEMBL
Match: A0A1S3CB88 (Membrane-anchored ubiquitin-fold protein OS=Cucumis melo OX=3656 GN=LOC103498522 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.9e-35
Identity = 82/117 (70.09%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKES+LAQWPR                
Sbjct: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESILAQWPREKENGPRTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SPLYDIPG+VTTMHVVIQPP+LEKEKKAG+QATQNKCVCVIL
Sbjct: 61  AGKILENNRTLNDCRSPLYDIPGSVTTMHVVIQPPTLEKEKKAGEQATQNKCVCVIL 117

[Close]

BLAST of Lsi03G001580 vs. ExPASy TrEMBL
Match: A0A0A0KUE8 (Membrane-anchored ubiquitin-fold protein OS=Cucumis sativus OX=3659 GN=Csa_5G638380 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.5e-35
Identity = 81/117 (69.23%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MAGVGDQLEIKFRLNDGSDIGPKTFPAATS+ATLKES+LAQWPR                
Sbjct: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSVATLKESILAQWPREKENGPRTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SPLYDIPG+VTTMHVVIQPP+LEKEKKAG+QATQNKCVCVIL
Sbjct: 61  AGKILENNRTLNDCRSPLYDIPGSVTTMHVVIQPPTLEKEKKAGEQATQNKCVCVIL 117

[Close]

BLAST of Lsi03G001580 vs. ExPASy TrEMBL
Match: A0A6J1JRG7 (Membrane-anchored ubiquitin-fold protein OS=Cucurbita maxima OX=3661 GN=LOC111487674 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.3e-35
Identity = 82/117 (70.09%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPR                
Sbjct: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPREKENGPRTVKDVKIIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SPLYDIPG+VTTMHVVIQPPSLEKEKKAGDQ+ QNKCVC IL
Sbjct: 61  AGRILENNRTLNDCRSPLYDIPGSVTTMHVVIQPPSLEKEKKAGDQSPQNKCVCAIL 117

[Close]

BLAST of Lsi03G001580 vs. ExPASy TrEMBL
Match: A0A6J1H159 (Membrane-anchored ubiquitin-fold protein OS=Cucurbita moschata OX=3662 GN=LOC111459185 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-34
Identity = 82/117 (70.09%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPR                
Sbjct: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPREKENGPRTVKDVKIIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SPLYDIPG+VTTMHVVIQPPSLEKEKKAGDQ+ QNKCVC IL
Sbjct: 61  AGRILENNRTLNDCRSPLYDIPGSVTTMHVVIQPPSLEKEKKAGDQSPQNKCVCSIL 117

[Close]

BLAST of Lsi03G001580 vs. NCBI nr
Match: XP_038889784.1 (membrane-anchored ubiquitin-fold protein 2-like [Benincasa hispida] >XP_038889785.1 membrane-anchored ubiquitin-fold protein 2-like [Benincasa hispida] >XP_038889786.1 membrane-anchored ubiquitin-fold protein 2-like [Benincasa hispida] >XP_038889787.1 membrane-anchored ubiquitin-fold protein 2-like [Benincasa hispida])

HSP 1 Score: 160.6 bits (405), Expect = 6.1e-36
Identity = 84/117 (71.79%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKES+LAQWPR                
Sbjct: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESILAQWPREKENGPRTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SPLYDIPG+VTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL
Sbjct: 61  AGKILENNRTLNDCRSPLYDIPGSVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 117

[Close]

BLAST of Lsi03G001580 vs. NCBI nr
Match: XP_022134039.1 (membrane-anchored ubiquitin-fold protein 2-like [Momordica charantia] >XP_022134040.1 membrane-anchored ubiquitin-fold protein 2-like [Momordica charantia] >XP_022134041.1 membrane-anchored ubiquitin-fold protein 2-like [Momordica charantia] >XP_022134042.1 membrane-anchored ubiquitin-fold protein 2-like [Momordica charantia] >XP_022134043.1 membrane-anchored ubiquitin-fold protein 2-like [Momordica charantia])

HSP 1 Score: 159.5 bits (402), Expect = 1.4e-35
Identity = 83/117 (70.94%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKES+LAQWPR                
Sbjct: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESILAQWPREKENGPRTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SPLYDIPG+VTTMHVVIQPPSLEKEKKAGDQ+TQNKCVCVIL
Sbjct: 61  AGKILENNRTLNDCRSPLYDIPGSVTTMHVVIQPPSLEKEKKAGDQSTQNKCVCVIL 117

[Close]

BLAST of Lsi03G001580 vs. NCBI nr
Match: XP_008459370.1 (PREDICTED: membrane-anchored ubiquitin-fold protein 2-like isoform X2 [Cucumis melo] >XP_008459372.1 PREDICTED: membrane-anchored ubiquitin-fold protein 2-like isoform X2 [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 4.0e-35
Identity = 82/117 (70.09%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKES+LAQWPR                
Sbjct: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESILAQWPREKENGPRTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SPLYDIPG+VTTMHVVIQPP+LEKEKKAG+QATQNKCVCVIL
Sbjct: 61  AGKILENNRTLNDCRSPLYDIPGSVTTMHVVIQPPTLEKEKKAGEQATQNKCVCVIL 117

[Close]

BLAST of Lsi03G001580 vs. NCBI nr
Match: XP_004141460.1 (membrane-anchored ubiquitin-fold protein 2 [Cucumis sativus] >XP_011656006.1 membrane-anchored ubiquitin-fold protein 2 [Cucumis sativus] >XP_031741332.1 membrane-anchored ubiquitin-fold protein 2 [Cucumis sativus] >XP_031741333.1 membrane-anchored ubiquitin-fold protein 2 [Cucumis sativus] >KGN52499.1 hypothetical protein Csa_008602 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 5.2e-35
Identity = 81/117 (69.23%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MAGVGDQLEIKFRLNDGSDIGPKTFPAATS+ATLKES+LAQWPR                
Sbjct: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSVATLKESILAQWPREKENGPRTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SPLYDIPG+VTTMHVVIQPP+LEKEKKAG+QATQNKCVCVIL
Sbjct: 61  AGKILENNRTLNDCRSPLYDIPGSVTTMHVVIQPPTLEKEKKAGEQATQNKCVCVIL 117

[Close]

BLAST of Lsi03G001580 vs. NCBI nr
Match: XP_022990935.1 (membrane-anchored ubiquitin-fold protein 2 isoform X2 [Cucurbita maxima] >XP_023541360.1 membrane-anchored ubiquitin-fold protein 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.0 bits (393), Expect = 1.5e-34
Identity = 82/117 (70.09%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPR                
Sbjct: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPREKENGPRTVKDVKIIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SPLYDIPG+VTTMHVVIQPPSLEKEKKAGDQ+ QNKCVC IL
Sbjct: 61  AGRILENNRTLNDCRSPLYDIPGSVTTMHVVIQPPSLEKEKKAGDQSPQNKCVCAIL 117

[Close]

BLAST of Lsi03G001580 vs. TAIR 10
Match: AT5G15460.1 (membrane-anchored ubiquitin-fold protein 2 )

HSP 1 Score: 100.9 bits (250), Expect = 5.4e-22
Identity = 60/119 (50.42%), Postives = 68/119 (57.14%), Query Frame = 0


Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MA V DQLEIKFRLNDGSDIGPK FP AT++ATLKE+V+AQWPR                
Sbjct: 1   MAEVKDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKK----AGDQATQNKCVCV 87
                          SP+ +  G VTTMHV+IQ    EKEKK     GD   QNKCVC+
Sbjct: 61  AGRILENNKTVGDCRSPVGNFSGAVTTMHVIIQHQVTEKEKKKKKPKGD-LKQNKCVCL 118

[Close]

BLAST of Lsi03G001580 vs. TAIR 10
Match: AT5G15460.2 (membrane-anchored ubiquitin-fold protein 2 )

HSP 1 Score: 100.9 bits (250), Expect = 5.4e-22
Identity = 60/119 (50.42%), Postives = 68/119 (57.14%), Query Frame = 0


Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MA V DQLEIKFRLNDGSDIGPK FP AT++ATLKE+V+AQWPR                
Sbjct: 1   MAEVKDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKK----AGDQATQNKCVCV 87
                          SP+ +  G VTTMHV+IQ    EKEKK     GD   QNKCVC+
Sbjct: 61  AGRILENNKTVGDCRSPVGNFSGAVTTMHVIIQHQVTEKEKKKKKPKGD-LKQNKCVCL 118

[Close]

BLAST of Lsi03G001580 vs. TAIR 10
Match: AT3G01050.1 (membrane-anchored ubiquitin-fold protein 1 precursor )

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-21
Identity = 52/117 (44.44%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MA V +QLEIKFRL DGSDIGPK FP AT+++ LKE+V+++WPR                
Sbjct: 1   MAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SP+ ++ G VTTMHV+IQ P  EKEKK       NKCVC ++
Sbjct: 61  AGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKEKKPKGDPKMNKCVCSVM 117

[Close]

BLAST of Lsi03G001580 vs. TAIR 10
Match: AT1G22050.1 (membrane-anchored ubiquitin-fold protein 6 precursor )

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-15
Identity = 40/119 (33.61%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGVS------------- 60
           MAG  D +E+KFRL DG+DIGP  +  + ++++LKE +++QWP+                
Sbjct: 1   MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLIN 60

Query: 61  ----------------PLYDIPGTVTTMHVVIQPPSLEK--EKKAGDQATQNKCVCVIL 89
                           P+ ++PG + TMH+V++ P+L+K  EK   D   +N+CVC IL
Sbjct: 61  AGKILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDKKSEKLQNDPPMKNRCVCTIL 119

[Close]

BLAST of Lsi03G001580 vs. TAIR 10
Match: AT1G77870.1 (membrane-anchored ubiquitin-fold protein 5 precursor )

HSP 1 Score: 78.2 bits (191), Expect = 3.7e-15
Identity = 43/119 (36.13%), Postives = 60/119 (50.42%), Query Frame = 0


Query: 3   GVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWP------------------- 62
           G  D +E+KFRL DG+DIGP  +    ++A+LKE ++AQWP                   
Sbjct: 2   GDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLINGG 61

Query: 63  ------------RGVSPLYDIPGTVTTMHVVIQPPSLE--KEKKAGDQATQNKCVCVIL 89
                       R +  + ++PG VTTMHVV++PP  E  KEK   D   ++ CVC IL
Sbjct: 62  KILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKLQNDPPRKSHCVCCIL 120

The following BLAST results are available for this feature:

BLAST of Lsi03G001580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LCS8	7.5e-21	50.42	Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana OX=3702 GN=MU...	[more]
Q9MAB9	1.7e-20	44.44	Membrane-anchored ubiquitin-fold protein 1 OS=Arabidopsis thaliana OX=3702 GN=MU...	[more]
Q6Z8K4	1.1e-14	35.29	Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q75GT2	1.8e-14	38.46	Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q8GWJ6	1.8e-14	33.61	Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana OX=3702 GN=MU...	[more]

BLAST of Lsi03G001580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BXN4	6.6e-36	70.94	Membrane-anchored ubiquitin-fold protein OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A1S3CB88	1.9e-35	70.09	Membrane-anchored ubiquitin-fold protein OS=Cucumis melo OX=3656 GN=LOC103498522...	[more]
A0A0A0KUE8	2.5e-35	69.23	Membrane-anchored ubiquitin-fold protein OS=Cucumis sativus OX=3659 GN=Csa_5G638...	[more]
A0A6J1JRG7	7.3e-35	70.09	Membrane-anchored ubiquitin-fold protein OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1H159	1.2e-34	70.09	Membrane-anchored ubiquitin-fold protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Lsi03G001580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889784.1	6.1e-36	71.79	membrane-anchored ubiquitin-fold protein 2-like [Benincasa hispida] >XP_03888978...	[more]
XP_022134039.1	1.4e-35	70.94	membrane-anchored ubiquitin-fold protein 2-like [Momordica charantia] >XP_022134...	[more]
XP_008459370.1	4.0e-35	70.09	PREDICTED: membrane-anchored ubiquitin-fold protein 2-like isoform X2 [Cucumis m...	[more]
XP_004141460.1	5.2e-35	69.23	membrane-anchored ubiquitin-fold protein 2 [Cucumis sativus] >XP_011656006.1 mem...	[more]
XP_022990935.1	1.5e-34	70.09	membrane-anchored ubiquitin-fold protein 2 isoform X2 [Cucurbita maxima] >XP_023...	[more]

BLAST of Lsi03G001580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15460.1	5.4e-22	50.42	membrane-anchored ubiquitin-fold protein 2	[more]
AT5G15460.2	5.4e-22	50.42	membrane-anchored ubiquitin-fold protein 2	[more]
AT3G01050.1	1.2e-21	44.44	membrane-anchored ubiquitin-fold protein 1 precursor	[more]
AT1G22050.1	1.3e-15	33.61	membrane-anchored ubiquitin-fold protein 6 precursor	[more]
AT1G77870.1	3.7e-15	36.13	membrane-anchored ubiquitin-fold protein 5 precursor	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039540	UBL3-like, ubiquitin domain	PFAM	PF13881	Rad60-SLD_2	coord: 6..46 e-value: 7.4E-13 score: 48.6 coord: 48..86 e-value: 1.1E-5 score: 25.5
None	No IPR available	GENE3D	3.10.20.90		coord: 1..49 e-value: 9.5E-13 score: 49.8
None	No IPR available	PANTHER	PTHR13169:SF4	MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2	coord: 47..88 coord: 1..44
IPR040015	UBL3-like	PANTHER	PTHR13169	UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN	coord: 47..88 coord: 1..44
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 4..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G001580.1	Lsi03G001580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane