Lsi03G001550 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G001550
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Cyclic nucleotide gated channel
Location	chr03: 2154484 .. 2154939 (-)
RNA-Seq Expression	Lsi03G001550
Synteny	Lsi03G001550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGTTCATCGTGTGTGGACGAGTAAAACGTAGCCAAAGCCTGAGCAAGGGCATGACAGCAACAAGTTGGATTGAACCAGGAGGATTTCTTGGCGACGAGCTGCTATCGTGGTGTCTTCGGCGCCCGTTTCTAGAGAGACTTCCAGCTTCGTCAGCTACATTTGTTTGCATTGAACCAACAGAAGCATTTGCCCTGAAAGCAGACCATCTGAAGTACATAACCGATCACTTCCGATACAAATTCGCGAACGAGAGACTGAAGAGAACTGCAAGATATTACTCTTCCAACTGGAGAACATGGGCTGCTGTGAACATACAATTTGCTTGGCGTCGATACAGAAAGAGGATGAGACGTCCAGTGATAGCTGTGGTAGAAAATGGAAGCAATGAACGTAGGCTTTTGCAGTATGCTGCAATGTTCATGTCATTCAGGCCACACGACCATCTTGAATAG

mRNA sequence

ATGCTGTTCATCGTGTGTGGACGAGTAAAACGTAGCCAAAGCCTGAGCAAGGGCATGACAGCAACAAGTTGGATTGAACCAGGAGGATTTCTTGGCGACGAGCTGCTATCGTGGTGTCTTCGGCGCCCGTTTCTAGAGAGACTTCCAGCTTCGTCAGCTACATTTGTTTGCATTGAACCAACAGAAGCATTTGCCCTGAAAGCAGACCATCTGAAGTACATAACCGATCACTTCCGATACAAATTCGCGAACGAGAGACTGAAGAGAACTGCAAGATATTACTCTTCCAACTGGAGAACATGGGCTGCTGTGAACATACAATTTGCTTGGCGTCGATACAGAAAGAGGATGAGACGTCCAGTGATAGCTGTGGTAGAAAATGGAAGCAATGAACGTAGGCTTTTGCAGTATGCTGCAATGTTCATGTCATTCAGGCCACACGACCATCTTGAATAG

Coding sequence (CDS)

ATGCTGTTCATCGTGTGTGGACGAGTAAAACGTAGCCAAAGCCTGAGCAAGGGCATGACAGCAACAAGTTGGATTGAACCAGGAGGATTTCTTGGCGACGAGCTGCTATCGTGGTGTCTTCGGCGCCCGTTTCTAGAGAGACTTCCAGCTTCGTCAGCTACATTTGTTTGCATTGAACCAACAGAAGCATTTGCCCTGAAAGCAGACCATCTGAAGTACATAACCGATCACTTCCGATACAAATTCGCGAACGAGAGACTGAAGAGAACTGCAAGATATTACTCTTCCAACTGGAGAACATGGGCTGCTGTGAACATACAATTTGCTTGGCGTCGATACAGAAAGAGGATGAGACGTCCAGTGATAGCTGTGGTAGAAAATGGAAGCAATGAACGTAGGCTTTTGCAGTATGCTGCAATGTTCATGTCATTCAGGCCACACGACCATCTTGAATAG

Protein sequence

MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEPTEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRPVIAVVENGSNERRLLQYAAMFMSFRPHDHLE

Homology

[Close]

BLAST of Lsi03G001550 vs. ExPASy Swiss-Prot
Match: O65718 (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana OX=3702 GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.6e-61
Identity = 120/159 (75.47%), Postives = 133/159 (83.65%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           M+FI+ GRVKR QSLSKG+ ATS +EPGG+LGDELLSWCLRRPFL+RLP SSATFVC+E 
Sbjct: 568 MIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLEN 627

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
            EAF+L ++ L+YITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQ AWRR RKR R  
Sbjct: 628 IEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKRTRGE 687

Query: 121 VIA-----VVEN---GSNERRLLQYAAMFMSFRPHDHLE 152
            I      V EN   G++ERRLLQYAAMFMS RPHDHLE
Sbjct: 688 NIGGSMSPVSENSIEGNSERRLLQYAAMFMSIRPHDHLE 726

[Close]

BLAST of Lsi03G001550 vs. ExPASy Swiss-Prot
Match: Q94AS9 (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana OX=3702 GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 162.9 bits (411), Expect = 2.8e-39
Identity = 82/157 (52.23%), Postives = 106/157 (67.52%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           MLF+V G ++ SQ L  G+ +   + PG F GDELLSWCLRRPF+ERLP SS+T V +E 
Sbjct: 533 MLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLET 592

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRM--- 120
           TEAF L A+ +KY+T HFRY F NE++KR+ARYYS  WRTWAAV +Q AWRRY+ R+   
Sbjct: 593 TEAFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHRLTLT 652

Query: 121 -------RRPVIAVVENGSNERRLLQYAAMFMSFRPH 148
                  RRP+      G ++ RL  YAA+  S +P+
Sbjct: 653 SLSFIRPRRPLSRCASLGEDKLRL--YAAILTSPKPN 687

[Close]

BLAST of Lsi03G001550 vs. ExPASy Swiss-Prot
Match: Q8L7Z0 (Cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana OX=3702 GN=CNGC17 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.8e-21
Identity = 54/133 (40.60%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLS--KGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCI 60
           MLFI+ GR++ S +     G   +  + PG F G+ELLSW L       LP+S+ T   +
Sbjct: 518 MLFIIRGRLESSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTLNLPSSTRTVRAL 577

Query: 61  EPTEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMR 120
              EAFAL+A+ LK++ + FR +  +++L+ T R+YS +WRTWAA  IQ AWRRY++R+ 
Sbjct: 578 VEVEAFALRAEDLKFVANQFR-RLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKRRVM 637

Query: 121 RPVIAVVENGSNE 132
              +  +E+  NE
Sbjct: 638 ENNLTAIESMENE 649

[Close]

BLAST of Lsi03G001550 vs. ExPASy Swiss-Prot
Match: O65717 (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana OX=3702 GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-17
Identity = 51/129 (39.53%), Postives = 72/129 (55.81%), Query Frame = 0


Query: 1   MLFIVCGRVK--RSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCI 60
           MLFI+ G++    +     G   + ++  G F G+ELL+W L       LP S+ T   +
Sbjct: 523 MLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRAL 582

Query: 61  EPTEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMR 120
              EAFALKAD LK++   FR +  +++L+ T RYYS  W+TWAA  IQ AWRRY K+  
Sbjct: 583 MEVEAFALKADDLKFVASQFR-RLHSKQLRHTFRYYSQQWKTWAACFIQAAWRRYIKKKL 642

Query: 121 RPVIAVVEN 128
              +   EN
Sbjct: 643 EESLKEEEN 650

[Close]

BLAST of Lsi03G001550 vs. ExPASy Swiss-Prot
Match: Q9LEQ3 (Cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana OX=3702 GN=CNGC18 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.7e-17
Identity = 43/118 (36.44%), Postives = 70/118 (59.32%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLS--KGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCI 60
           MLF++ G+++ S +     G   ++ + PG F G+ELL+W L       LP+S+ +   +
Sbjct: 486 MLFVIRGQIESSTTNGGRSGFFNSTTLRPGDFCGEELLTWALMPNSTLNLPSSTRSVRAL 545

Query: 61  EPTEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKR 117
              EAFAL A+ LK++   F+ +  +++L+   RYYS  WR W A  +Q AWRRY++R
Sbjct: 546 SEVEAFALSAEDLKFVAHQFK-RLQSKKLQHAFRYYSHQWRAWGACFVQSAWRRYKRR 602

[Close]

BLAST of Lsi03G001550 vs. ExPASy TrEMBL
Match: A0A0A0KXJ7 (Cyclic nucleotide-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G638350 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 3.7e-79
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           MLFIVCGRVKRSQSLSKGMTATS+IEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP
Sbjct: 538 MLFIVCGRVKRSQSLSKGMTATSFIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 597

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
           TEAFALKADHLKYITDHFRYKFANERLKRTAR+YSSNWRTWAAVNIQ AWRRYRKRMRRP
Sbjct: 598 TEAFALKADHLKYITDHFRYKFANERLKRTARFYSSNWRTWAAVNIQLAWRRYRKRMRRP 657

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
           VIAVVENGS ERRLLQYAAMFMSFRPHDHLE
Sbjct: 658 VIAVVENGSTERRLLQYAAMFMSFRPHDHLE 688

[Close]

BLAST of Lsi03G001550 vs. ExPASy TrEMBL
Match: A0A5D3BN32 (Cyclic nucleotide-gated ion channel 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002590 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 146/151 (96.69%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           MLFIVCGRVKRSQSLSKGMTATS+IEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP
Sbjct: 556 MLFIVCGRVKRSQSLSKGMTATSFIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 615

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
           TEAFALKADHLKYITDHFRYKFANERLKRTAR+YSSNWRTWAAVNIQ AWRRYRKRMRRP
Sbjct: 616 TEAFALKADHLKYITDHFRYKFANERLKRTARFYSSNWRTWAAVNIQLAWRRYRKRMRRP 675

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
            IAVVENGS ERRLLQYAAMFMSFRPHDHLE
Sbjct: 676 AIAVVENGSTERRLLQYAAMFMSFRPHDHLE 706

[Close]

BLAST of Lsi03G001550 vs. ExPASy TrEMBL
Match: A0A1S3CB78 (cyclic nucleotide-gated ion channel 2 OS=Cucumis melo OX=3656 GN=LOC103498518 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 146/151 (96.69%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           MLFIVCGRVKRSQSLSKGMTATS+IEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP
Sbjct: 538 MLFIVCGRVKRSQSLSKGMTATSFIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 597

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
           TEAFALKADHLKYITDHFRYKFANERLKRTAR+YSSNWRTWAAVNIQ AWRRYRKRMRRP
Sbjct: 598 TEAFALKADHLKYITDHFRYKFANERLKRTARFYSSNWRTWAAVNIQLAWRRYRKRMRRP 657

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
            IAVVENGS ERRLLQYAAMFMSFRPHDHLE
Sbjct: 658 AIAVVENGSTERRLLQYAAMFMSFRPHDHLE 688

[Close]

BLAST of Lsi03G001550 vs. ExPASy TrEMBL
Match: A0A6J1H2J6 (cyclic nucleotide-gated ion channel 2 OS=Cucurbita moschata OX=3662 GN=LOC111459113 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.1e-78
Identity = 145/151 (96.03%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           MLFIVCGRVKR+QSLSKGMTATS +E GGFLGDELLSWCLRRPFLERLPASSATFVCIEP
Sbjct: 560 MLFIVCGRVKRNQSLSKGMTATSLLESGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 619

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
           TE FALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP
Sbjct: 620 TEVFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 679

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
           VI VVENGSNERRLLQYAAMFMSFRPHDHLE
Sbjct: 680 VITVVENGSNERRLLQYAAMFMSFRPHDHLE 710

[Close]

BLAST of Lsi03G001550 vs. ExPASy TrEMBL
Match: A0A6J1JUP9 (cyclic nucleotide-gated ion channel 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487670 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.0e-76
Identity = 143/151 (94.70%), Postives = 146/151 (96.69%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           MLFIVCGRVKR+QSLSKGMTA+S IE GGFLGDELLSWCLRRPFLERLPASSATFVCIEP
Sbjct: 548 MLFIVCGRVKRNQSLSKGMTASSLIESGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 607

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
           TE F+LKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP
Sbjct: 608 TEVFSLKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 667

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
           VI VVEN SNERRLLQYAAMFMSFRPHDHLE
Sbjct: 668 VITVVENRSNERRLLQYAAMFMSFRPHDHLE 698

[Close]

BLAST of Lsi03G001550 vs. NCBI nr
Match: XP_004141458.2 (cyclic nucleotide-gated ion channel 2 [Cucumis sativus] >KGN52496.1 hypothetical protein Csa_009129 [Cucumis sativus])

HSP 1 Score: 303.9 bits (777), Expect = 7.7e-79
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           MLFIVCGRVKRSQSLSKGMTATS+IEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP
Sbjct: 538 MLFIVCGRVKRSQSLSKGMTATSFIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 597

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
           TEAFALKADHLKYITDHFRYKFANERLKRTAR+YSSNWRTWAAVNIQ AWRRYRKRMRRP
Sbjct: 598 TEAFALKADHLKYITDHFRYKFANERLKRTARFYSSNWRTWAAVNIQLAWRRYRKRMRRP 657

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
           VIAVVENGS ERRLLQYAAMFMSFRPHDHLE
Sbjct: 658 VIAVVENGSTERRLLQYAAMFMSFRPHDHLE 688

[Close]

BLAST of Lsi03G001550 vs. NCBI nr
Match: XP_038890063.1 (cyclic nucleotide-gated ion channel 2 [Benincasa hispida])

HSP 1 Score: 303.1 bits (775), Expect = 1.3e-78
Identity = 146/151 (96.69%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           MLFIVCGRVKRSQSLSKGMTATS+IEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP
Sbjct: 543 MLFIVCGRVKRSQSLSKGMTATSFIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 602

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
           TEAFALKADHLKYITDHFRYKFANERLKRTAR+YSSNWRTWAAVNIQFAWRRYRKRMRRP
Sbjct: 603 TEAFALKADHLKYITDHFRYKFANERLKRTARFYSSNWRTWAAVNIQFAWRRYRKRMRRP 662

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
            IAVVE+GS+ERRLLQYAAMFMSFRPHDHLE
Sbjct: 663 AIAVVEDGSSERRLLQYAAMFMSFRPHDHLE 693

[Close]

BLAST of Lsi03G001550 vs. NCBI nr
Match: KAA0039448.1 (cyclic nucleotide-gated ion channel 2 [Cucumis melo var. makuwa] >TYK00637.1 cyclic nucleotide-gated ion channel 2 [Cucumis melo var. makuwa])

HSP 1 Score: 302.4 bits (773), Expect = 2.2e-78
Identity = 146/151 (96.69%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           MLFIVCGRVKRSQSLSKGMTATS+IEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP
Sbjct: 556 MLFIVCGRVKRSQSLSKGMTATSFIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 615

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
           TEAFALKADHLKYITDHFRYKFANERLKRTAR+YSSNWRTWAAVNIQ AWRRYRKRMRRP
Sbjct: 616 TEAFALKADHLKYITDHFRYKFANERLKRTARFYSSNWRTWAAVNIQLAWRRYRKRMRRP 675

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
            IAVVENGS ERRLLQYAAMFMSFRPHDHLE
Sbjct: 676 AIAVVENGSTERRLLQYAAMFMSFRPHDHLE 706

[Close]

BLAST of Lsi03G001550 vs. NCBI nr
Match: XP_008459361.1 (PREDICTED: cyclic nucleotide-gated ion channel 2 [Cucumis melo])

HSP 1 Score: 302.4 bits (773), Expect = 2.2e-78
Identity = 146/151 (96.69%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           MLFIVCGRVKRSQSLSKGMTATS+IEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP
Sbjct: 538 MLFIVCGRVKRSQSLSKGMTATSFIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 597

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
           TEAFALKADHLKYITDHFRYKFANERLKRTAR+YSSNWRTWAAVNIQ AWRRYRKRMRRP
Sbjct: 598 TEAFALKADHLKYITDHFRYKFANERLKRTARFYSSNWRTWAAVNIQLAWRRYRKRMRRP 657

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
            IAVVENGS ERRLLQYAAMFMSFRPHDHLE
Sbjct: 658 AIAVVENGSTERRLLQYAAMFMSFRPHDHLE 688

[Close]

BLAST of Lsi03G001550 vs. NCBI nr
Match: KAG7033196.1 (Cyclic nucleotide-gated ion channel 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 300.8 bits (769), Expect = 6.5e-78
Identity = 145/151 (96.03%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           MLFIVCGRVKR+QSLSKGMTATS +E GGFLGDELLSWCLRRPFLERLPASSATFVCIEP
Sbjct: 560 MLFIVCGRVKRNQSLSKGMTATSLLESGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 619

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
           TE FALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP
Sbjct: 620 TEVFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 679

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
           VI VVENGSNERRLLQYAAMFMSFRPHDHLE
Sbjct: 680 VITVVENGSNERRLLQYAAMFMSFRPHDHLE 710

[Close]

BLAST of Lsi03G001550 vs. TAIR 10
Match: AT5G15410.2 (Cyclic nucleotide-regulated ion channel family protein )

HSP 1 Score: 236.1 bits (601), Expect = 1.8e-62
Identity = 120/159 (75.47%), Postives = 133/159 (83.65%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           M+FI+ GRVKR QSLSKG+ ATS +EPGG+LGDELLSWCLRRPFL+RLP SSATFVC+E 
Sbjct: 567 MIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLEN 626

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
            EAF+L ++ L+YITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQ AWRR RKR R  
Sbjct: 627 IEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKRTRGE 686

Query: 121 VIA-----VVEN---GSNERRLLQYAAMFMSFRPHDHLE 152
            I      V EN   G++ERRLLQYAAMFMS RPHDHLE
Sbjct: 687 NIGGSMSPVSENSIEGNSERRLLQYAAMFMSIRPHDHLE 725

[Close]

BLAST of Lsi03G001550 vs. TAIR 10
Match: AT5G15410.1 (Cyclic nucleotide-regulated ion channel family protein )

HSP 1 Score: 236.1 bits (601), Expect = 1.8e-62
Identity = 120/159 (75.47%), Postives = 133/159 (83.65%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           M+FI+ GRVKR QSLSKG+ ATS +EPGG+LGDELLSWCLRRPFL+RLP SSATFVC+E 
Sbjct: 568 MIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLEN 627

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
            EAF+L ++ L+YITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQ AWRR RKR R  
Sbjct: 628 IEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKRTRGE 687

Query: 121 VIA-----VVEN---GSNERRLLQYAAMFMSFRPHDHLE 152
            I      V EN   G++ERRLLQYAAMFMS RPHDHLE
Sbjct: 688 NIGGSMSPVSENSIEGNSERRLLQYAAMFMSIRPHDHLE 726

[Close]

BLAST of Lsi03G001550 vs. TAIR 10
Match: AT5G54250.1 (cyclic nucleotide-gated cation channel 4 )

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-40
Identity = 82/157 (52.23%), Postives = 106/157 (67.52%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           MLF+V G ++ SQ L  G+ +   + PG F GDELLSWCLRRPF+ERLP SS+T V +E 
Sbjct: 533 MLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLET 592

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRM--- 120
           TEAF L A+ +KY+T HFRY F NE++KR+ARYYS  WRTWAAV +Q AWRRY+ R+   
Sbjct: 593 TEAFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHRLTLT 652

Query: 121 -------RRPVIAVVENGSNERRLLQYAAMFMSFRPH 148
                  RRP+      G ++ RL  YAA+  S +P+
Sbjct: 653 SLSFIRPRRPLSRCASLGEDKLRL--YAAILTSPKPN 687

[Close]

BLAST of Lsi03G001550 vs. TAIR 10
Match: AT5G54250.2 (cyclic nucleotide-gated cation channel 4 )

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-40
Identity = 82/157 (52.23%), Postives = 106/157 (67.52%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           MLF+V G ++ SQ L  G+ +   + PG F GDELLSWCLRRPF+ERLP SS+T V +E 
Sbjct: 533 MLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLET 592

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRM--- 120
           TEAF L A+ +KY+T HFRY F NE++KR+ARYYS  WRTWAAV +Q AWRRY+ R+   
Sbjct: 593 TEAFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHRLTLT 652

Query: 121 -------RRPVIAVVENGSNERRLLQYAAMFMSFRPH 148
                  RRP+      G ++ RL  YAA+  S +P+
Sbjct: 653 SLSFIRPRRPLSRCASLGEDKLRL--YAAILTSPKPN 687

[Close]

BLAST of Lsi03G001550 vs. TAIR 10
Match: AT5G54250.3 (cyclic nucleotide-gated cation channel 4 )

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-40
Identity = 82/157 (52.23%), Postives = 106/157 (67.52%), Query Frame = 0


Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           MLF+V G ++ SQ L  G+ +   + PG F GDELLSWCLRRPF+ERLP SS+T V +E 
Sbjct: 528 MLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLET 587

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRM--- 120
           TEAF L A+ +KY+T HFRY F NE++KR+ARYYS  WRTWAAV +Q AWRRY+ R+   
Sbjct: 588 TEAFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHRLTLT 647

Query: 121 -------RRPVIAVVENGSNERRLLQYAAMFMSFRPH 148
                  RRP+      G ++ RL  YAA+  S +P+
Sbjct: 648 SLSFIRPRRPLSRCASLGEDKLRL--YAAILTSPKPN 682

The following BLAST results are available for this feature:

BLAST of Lsi03G001550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65718	2.6e-61	75.47	Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana OX=3702 GN=CNGC2 P...	[more]
Q94AS9	2.8e-39	52.23	Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana OX=3702 GN=CNGC4 P...	[more]
Q8L7Z0	5.8e-21	40.60	Cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana OX=3702 GN=CNGC17...	[more]
O65717	1.7e-17	39.53	Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana OX=3702 GN=CNGC1 P...	[more]
Q9LEQ3	8.7e-17	36.44	Cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana OX=3702 GN=CNGC18...	[more]

BLAST of Lsi03G001550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXJ7	3.7e-79	97.35	Cyclic nucleotide-binding domain-containing protein OS=Cucumis sativus OX=3659 G...	[more]
A0A5D3BN32	1.1e-78	96.69	Cyclic nucleotide-gated ion channel 2 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3CB78	1.1e-78	96.69	cyclic nucleotide-gated ion channel 2 OS=Cucumis melo OX=3656 GN=LOC103498518 PE...	[more]
A0A6J1H2J6	3.1e-78	96.03	cyclic nucleotide-gated ion channel 2 OS=Cucurbita moschata OX=3662 GN=LOC111459...	[more]
A0A6J1JUP9	1.0e-76	94.70	cyclic nucleotide-gated ion channel 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of Lsi03G001550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141458.2	7.7e-79	97.35	cyclic nucleotide-gated ion channel 2 [Cucumis sativus] >KGN52496.1 hypothetical...	[more]
XP_038890063.1	1.3e-78	96.69	cyclic nucleotide-gated ion channel 2 [Benincasa hispida]	[more]
KAA0039448.1	2.2e-78	96.69	cyclic nucleotide-gated ion channel 2 [Cucumis melo var. makuwa] >TYK00637.1 cyc...	[more]
XP_008459361.1	2.2e-78	96.69	PREDICTED: cyclic nucleotide-gated ion channel 2 [Cucumis melo]	[more]
KAG7033196.1	6.5e-78	96.03	Cyclic nucleotide-gated ion channel 2 [Cucurbita argyrosperma subsp. argyrosperm...	[more]

BLAST of Lsi03G001550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15410.2	1.8e-62	75.47	Cyclic nucleotide-regulated ion channel family protein	[more]
AT5G15410.1	1.8e-62	75.47	Cyclic nucleotide-regulated ion channel family protein	[more]
AT5G54250.1	2.0e-40	52.23	cyclic nucleotide-gated cation channel 4	[more]
AT5G54250.2	2.0e-40	52.23	cyclic nucleotide-gated cation channel 4	[more]
AT5G54250.3	2.0e-40	52.23	cyclic nucleotide-gated cation channel 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10	Jelly Rolls	coord: 1..80 e-value: 3.4E-13 score: 51.5
None	No IPR available	PANTHER	PTHR45651:SF32	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE	coord: 1..151
None	No IPR available	PANTHER	PTHR45651	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	coord: 1..151
IPR018490	Cyclic nucleotide-binding-like	SUPERFAMILY	51206	cAMP-binding domain-like	coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G001550.1	Lsi03G001550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032147	activation of protein kinase activity
biological_process	GO:0070588	calcium ion transmembrane transport
biological_process	GO:0090307	mitotic spindle assembly
biological_process	GO:0007263	nitric oxide mediated signal transduction
biological_process	GO:0009626	plant-type hypersensitive response
biological_process	GO:0071805	potassium ion transmembrane transport
biological_process	GO:0060236	regulation of mitotic spindle organization
biological_process	GO:0070509	calcium ion import
cellular_component	GO:0005880	nuclear microtubule
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0072686	mitotic spindle
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005262	calcium channel activity
molecular_function	GO:0005222	intracellular cAMP-activated cation channel activity
molecular_function	GO:0005242	inward rectifier potassium channel activity
molecular_function	GO:0008017	microtubule binding
molecular_function	GO:0030295	protein kinase activator activity