Lsi03G001390 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G001390
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2
Location	chr03: 1991732 .. 1993277 (+)
RNA-Seq Expression	Lsi03G001390
Synteny	Lsi03G001390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAGGTAACCCAAACAACTCGTACTACTTGAAACTAACCAATCGTTTGAGTTATATTTATTTTTTAATTTGGTTAGGGTTGAGTTTTTTAGAACAAAAAATCTGGCTTCATTCACAAATTGAAAATTTTGAGTCGGCTAATCCGAACCGTACCGAACTTCTATTTAATATTTTATAACTTTTTGAGGGGTTAGGTTTATTGACGTATGCTCTTCCCTCTCATTCTCTCAATTTCTTACTCCTCTCTTTCAAATCCTCGATTTCTCTCAGTCTTGCATCCACACCGACCGTATCACCTCAATTAGGGGTGTTAAAAAAACCCAACAACCTGAAAACTGGACCAACCCAACCCAATTTATAAGTGTTGGGTTGTATTGTAATTTGCAGGAAATGACCGGTCGGTTTAACCCGAACCGAACCGGTCTCATATAAATAAATAATTTATTTAGGTTCCAAAACGCACGGACACGCAGACCGGCCACAGTCACCATTCGAGCCGTTTCTTCCCTTCTCACACTCAACGTCGTCGGCCAGTTGAACTCCTCGCCGTTTCTTTCTTTCCCTTTTCTCTTGTCGGACGCTCACCGGCCAATCGAATCAGTCAGCCCCTCAGTCGAACGAGACATTCGCTCGTCCTCAACCACGCCGAGAAACGCTGTCAACCGATCTTCTCTCACTAGGCTGTTCTTCAGATATGAGTTAGGTAAATTGTAAATTTGTGTTTTGAGTTTAAACCAGTGGGTTTTGATGTGTTGGTGTTGTAATTAGTTTAAATCAATGGTAAACAGTGAGTTATGGTGCGTTTGTGTTTGATCTGTGTTATTGTTTAAATCAGTGGGTTCTAGAAAATGTGTTTGTGTTCTGATCGAAACCCCAACCGGGTTGGGTTGGGTTACACAACTCATTCGGTCATCGGTGCATTCGGGCAGACAATCCGGTCCGATTGGTCTAAGAAACTCACCAAACCCAATCCAACCGCGTACGCCCCTAGCCTGGTTTTATATAGCAGCTTCCCCCCATTCCTTTCCTTTCTCACTCTCTCGCCCACAGTTGACTGCACGACCCCCCCTTCGGGTAATCCACCTCCCTTCTTTCAGAAGCTTGTCTCTTTGATCTATACCCTAGGGTTCTTCAATACCCATTTCTATTTGTTAAATTTTGTATGGATTACCTTTGTAAATTTAGGAATTGCATGATGTTTGGAATTGATTGGATCATACATTAATGTTTCTTCACTACTGCTCTTTTGTAGCAATGGCCAGAAACCTAGTTCCATTTCTGGTGCTACTGTCTTGGATTTCGATCTGCCAAGCTGCAAGCATTTTTCAGCCGATCTCAGATTCACATCGATATGCGGCTCTAGAGCTCTTCCGGCCTACTGATGGAGTATTTGGAAGGTATTAGACGTTTATTACTTGAGGAATTTATGTGTTTATTTTCTTTTTGTCTCCCTGGCTTAGATAGATTTCACGTAATCAGACGTGGCAGTCAAGGTCTTGGACAAATCATGGGTGGGAAGGTTTCGTCACTAATTCTTAAATAG

mRNA sequence

ATGACGAGGTTCCAAAACGCACGGACACGCAGACCGGCCACAGTCACCATTCGAGCCGTTTCTTCCCTTCTCACACTCAACGTCGTCGGCCAGTTGAACTCCTCGCCGTTTCTTTCTTTCCCTTTTCTCTTGTCGGACGCTCACCGGCCAATCGAATCAGTCAGCCCCTCAGTCGAACGAGACATTCGCTCGTCCTCAACCACGCCGAGAAACGCTGTCAACCGATCTTCTCTCACTAGGCTGTTCTTCAGATATGAGTTAGTGGGTTCTAGAAAATGTGTTTGTGTTCTGATCGAAACCCCAACCGGGTTGGGTTGGGTTACACAACTCATTCGGTCATCGGTGCATTCGGGCAGACAATCCGGTCCGATTGGTCTAAGAAACTCACCAAACCCAATCCAACCGCCAATGGCCAGAAACCTAGTTCCATTTCTGGTGCTACTGTCTTGGATTTCGATCTGCCAAGCTGCAAGCATTTTTCAGCCGATCTCAGATTCACATCGATATGCGGCTCTAGAGCTCTTCCGGCCTACTGATGGAGTATTTGGAAGATTTCACGTAATCAGACGTGGCAGTCAAGGTCTTGGACAAATCATGGGTGGGAAGGTTTCGTCACTAATTCTTAAATAG

Coding sequence (CDS)

ATGACGAGGTTCCAAAACGCACGGACACGCAGACCGGCCACAGTCACCATTCGAGCCGTTTCTTCCCTTCTCACACTCAACGTCGTCGGCCAGTTGAACTCCTCGCCGTTTCTTTCTTTCCCTTTTCTCTTGTCGGACGCTCACCGGCCAATCGAATCAGTCAGCCCCTCAGTCGAACGAGACATTCGCTCGTCCTCAACCACGCCGAGAAACGCTGTCAACCGATCTTCTCTCACTAGGCTGTTCTTCAGATATGAGTTAGTGGGTTCTAGAAAATGTGTTTGTGTTCTGATCGAAACCCCAACCGGGTTGGGTTGGGTTACACAACTCATTCGGTCATCGGTGCATTCGGGCAGACAATCCGGTCCGATTGGTCTAAGAAACTCACCAAACCCAATCCAACCGCCAATGGCCAGAAACCTAGTTCCATTTCTGGTGCTACTGTCTTGGATTTCGATCTGCCAAGCTGCAAGCATTTTTCAGCCGATCTCAGATTCACATCGATATGCGGCTCTAGAGCTCTTCCGGCCTACTGATGGAGTATTTGGAAGATTTCACGTAATCAGACGTGGCAGTCAAGGTCTTGGACAAATCATGGGTGGGAAGGTTTCGTCACTAATTCTTAAATAG

Protein sequence

MTRFQNARTRRPATVTIRAVSSLLTLNVVGQLNSSPFLSFPFLLSDAHRPIESVSPSVERDIRSSSTTPRNAVNRSSLTRLFFRYELVGSRKCVCVLIETPTGLGWVTQLIRSSVHSGRQSGPIGLRNSPNPIQPPMARNLVPFLVLLSWISICQAASIFQPISDSHRYAALELFRPTDGVFGRFHVIRRGSQGLGQIMGGKVSSLILK

Homology

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BLAST of Lsi03G001390 vs. ExPASy Swiss-Prot
Match: Q93Z16 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Arabidopsis thaliana OX=3702 GN=RPN2 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-07
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 137 MARNLVPFLVLLSWISICQAASIFQPISDSHRYAALELFRPTDGVF 183
           MA   V FLVL+  ++IC AAS+FQPISDSHR AAL++F P DG +
Sbjct: 2   MAGGNVRFLVLILAVAICGAASVFQPISDSHRSAALDVFVPVDGSY 47

[Close]

BLAST of Lsi03G001390 vs. ExPASy TrEMBL
Match: A0A0A0LYL0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181440 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-16
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 137 MARNLVPFLVLLSWISICQAASIFQPISDSHRYAALELFRPTDGVFG 184
           MARNLVPFLVLL WISICQAA+IFQPISDSHRYAALELFRPTDGVFG
Sbjct: 91  MARNLVPFLVLLFWISICQAANIFQPISDSHRYAALELFRPTDGVFG 137

[Close]

BLAST of Lsi03G001390 vs. ExPASy TrEMBL
Match: A0A6J1I2A8 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111469243 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.7e-16
Identity = 45/47 (95.74%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 137 MARNLVPFLVLLSWISICQAASIFQPISDSHRYAALELFRPTDGVFG 184
           MARNLVPFLVLL WISICQAA IFQPISDSHRYAALELFRPTDGVFG
Sbjct: 1   MARNLVPFLVLLFWISICQAAGIFQPISDSHRYAALELFRPTDGVFG 47

[Close]

BLAST of Lsi03G001390 vs. ExPASy TrEMBL
Match: A0A5D3E468 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00670 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.7e-16
Identity = 45/47 (95.74%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 137 MARNLVPFLVLLSWISICQAASIFQPISDSHRYAALELFRPTDGVFG 184
           MARNLVPFLVLL WISICQA SIFQPISDSHRYAALELFRPTDGVFG
Sbjct: 85  MARNLVPFLVLLFWISICQATSIFQPISDSHRYAALELFRPTDGVFG 131

[Close]

BLAST of Lsi03G001390 vs. ExPASy TrEMBL
Match: A0A5A7T227 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G003770 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.7e-16
Identity = 45/47 (95.74%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 137 MARNLVPFLVLLSWISICQAASIFQPISDSHRYAALELFRPTDGVFG 184
           MARNLVPFLVLL WISICQA SIFQPISDSHRYAALELFRPTDGVFG
Sbjct: 85  MARNLVPFLVLLFWISICQATSIFQPISDSHRYAALELFRPTDGVFG 131

[Close]

BLAST of Lsi03G001390 vs. ExPASy TrEMBL
Match: A0A1S3CL79 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Cucumis melo OX=3656 GN=LOC103501715 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.7e-16
Identity = 45/47 (95.74%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 137 MARNLVPFLVLLSWISICQAASIFQPISDSHRYAALELFRPTDGVFG 184
           MARNLVPFLVLL WISICQA SIFQPISDSHRYAALELFRPTDGVFG
Sbjct: 1   MARNLVPFLVLLFWISICQATSIFQPISDSHRYAALELFRPTDGVFG 47

[Close]

BLAST of Lsi03G001390 vs. NCBI nr
Match: KAE8637351.1 (hypothetical protein CSA_011901 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 7.5e-16
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 137 MARNLVPFLVLLSWISICQAASIFQPISDSHRYAALELFRPTDGVFG 184
           MARNLVPFLVLL WISICQAA+IFQPISDSHRYAALELFRPTDGVFG
Sbjct: 1   MARNLVPFLVLLFWISICQAANIFQPISDSHRYAALELFRPTDGVFG 47

[Close]

BLAST of Lsi03G001390 vs. NCBI nr
Match: XP_031745951.1 (LOW QUALITY PROTEIN: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 7.5e-16
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 137 MARNLVPFLVLLSWISICQAASIFQPISDSHRYAALELFRPTDGVFG 184
           MARNLVPFLVLL WISICQAA+IFQPISDSHRYAALELFRPTDGVFG
Sbjct: 1   MARNLVPFLVLLFWISICQAANIFQPISDSHRYAALELFRPTDGVFG 47

[Close]

BLAST of Lsi03G001390 vs. NCBI nr
Match: XP_011654943.1 (dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Cucumis sativus] >KAE8652844.1 hypothetical protein Csa_022851 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 7.5e-16
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 137 MARNLVPFLVLLSWISICQAASIFQPISDSHRYAALELFRPTDGVFG 184
           MARNLVPFLVLL WISICQAA+IFQPISDSHRYAALELFRPTDGVFG
Sbjct: 1   MARNLVPFLVLLFWISICQAANIFQPISDSHRYAALELFRPTDGVFG 47

[Close]

BLAST of Lsi03G001390 vs. NCBI nr
Match: KAA0035677.1 (dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 9.8e-16
Identity = 45/47 (95.74%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 137 MARNLVPFLVLLSWISICQAASIFQPISDSHRYAALELFRPTDGVFG 184
           MARNLVPFLVLL WISICQA SIFQPISDSHRYAALELFRPTDGVFG
Sbjct: 85  MARNLVPFLVLLFWISICQATSIFQPISDSHRYAALELFRPTDGVFG 131

[Close]

BLAST of Lsi03G001390 vs. NCBI nr
Match: XP_008463606.1 (PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 9.8e-16
Identity = 45/47 (95.74%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 137 MARNLVPFLVLLSWISICQAASIFQPISDSHRYAALELFRPTDGVFG 184
           MARNLVPFLVLL WISICQA SIFQPISDSHRYAALELFRPTDGVFG
Sbjct: 1   MARNLVPFLVLLFWISICQATSIFQPISDSHRYAALELFRPTDGVFG 47

[Close]

BLAST of Lsi03G001390 vs. TAIR 10
Match: AT4G21150.1 (ribophorin II (RPN2) family protein )

HSP 1 Score: 58.2 bits (139), Expect = 9.5e-09
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 137 MARNLVPFLVLLSWISICQAASIFQPISDSHRYAALELFRPTDGVF 183
           MA   V FLVL+  ++IC AAS+FQPISDSHR AAL++F P DG +
Sbjct: 2   MAGGNVRFLVLILAVAICGAASVFQPISDSHRSAALDVFVPVDGSY 47

[Close]

BLAST of Lsi03G001390 vs. TAIR 10
Match: AT4G21150.2 (ribophorin II (RPN2) family protein )

HSP 1 Score: 58.2 bits (139), Expect = 9.5e-09
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 137 MARNLVPFLVLLSWISICQAASIFQPISDSHRYAALELFRPTDGVF 183
           MA   V FLVL+  ++IC AAS+FQPISDSHR AAL++F P DG +
Sbjct: 1   MAGGNVRFLVLILAVAICGAASVFQPISDSHRSAALDVFVPVDGSY 46

[Close]

BLAST of Lsi03G001390 vs. TAIR 10
Match: AT4G21150.3 (ribophorin II (RPN2) family protein )

HSP 1 Score: 58.2 bits (139), Expect = 9.5e-09
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 137 MARNLVPFLVLLSWISICQAASIFQPISDSHRYAALELFRPTDGVF 183
           MA   V FLVL+  ++IC AAS+FQPISDSHR AAL++F P DG +
Sbjct: 2   MAGGNVRFLVLILAVAICGAASVFQPISDSHRSAALDVFVPVDGSY 47

The following BLAST results are available for this feature:

BLAST of Lsi03G001390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93Z16	1.3e-07	60.87	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Arab...	[more]

BLAST of Lsi03G001390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYL0	3.6e-16	95.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181440 PE=4 SV=1	[more]
A0A6J1I2A8	4.7e-16	95.74	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Cucu...	[more]
A0A5D3E468	4.7e-16	95.74	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Cucu...	[more]
A0A5A7T227	4.7e-16	95.74	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Cucu...	[more]
A0A1S3CL79	4.7e-16	95.74	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Cucu...	[more]

BLAST of Lsi03G001390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8637351.1	7.5e-16	95.74	hypothetical protein CSA_011901 [Cucumis sativus]	[more]
XP_031745951.1	7.5e-16	95.74	LOW QUALITY PROTEIN: dolichyl-diphosphooligosaccharide--protein glycosyltransfer...	[more]
XP_011654943.1	7.5e-16	95.74	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Cucumi...	[more]
KAA0035677.1	9.8e-16	95.74	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Cucumi...	[more]
XP_008463606.1	9.8e-16	95.74	PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subuni...	[more]

BLAST of Lsi03G001390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21150.1	9.5e-09	60.87	ribophorin II (RPN2) family protein	[more]
AT4G21150.2	9.5e-09	60.87	ribophorin II (RPN2) family protein	[more]
AT4G21150.3	9.5e-09	60.87	ribophorin II (RPN2) family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G001390.1	Lsi03G001390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006487	protein N-linked glycosylation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0008250	oligosaccharyltransferase complex
molecular_function	GO:0016740	transferase activity