Lsi03G001380 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G001380
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionarp2/3 complex-activating protein rickA
Locationchr03: 1981012 .. 1982138 (+)
RNA-Seq ExpressionLsi03G001380
SyntenyLsi03G001380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGTTGCATACATCCCGCTTTTCTCGCTGAAATCTGATTCCCTATTCCTCTGTTTATTCTTCAATATCCTCTTTCTCCTCTTTTCCCCTTTTGTTTTTAATGTCCAAACTCTAGTGAAAAATTAACCACATCTCCCAACCCTTCCTCTGCCTTTTCTTTTATAAGAACCTCACCATTCCAAACTCATAATCCCAAATTTCCATTCCCGTTTCTTTATTTCTCTCTAACTCCATGGATAACCAACGCTCCCCTGTTTTAACGTGGGCTTATTTCTTGCAAGCTAATGTGAGTTTCTCATCCATCTTCTTCCTAAATTCCCTCATTTTTGTAACTGGGTTCTCTTCTGATTTTGATTTTTTGTGTTTTTTTTAGCAGAATATTGATGAGTTACGCCATTCGCTTTTATGCACTACTCTGGAGCTGGAACAGACCAGAATTGCAGTTCAAGAAGAGCTGAAGAAGAGAGATGATCAGGTTTTACATCTCAAGCATTTATTGAATCAAGCCATTAAAGAAAGAGATGAAGCTAATGAAAAATGTGATAAGCTTCTTCTTCAGAAACTCTTTTTCCATCATCATCATCATCATCATCGTCCTCCTCTCTCTGCAATTTCCACCATTGACGACGATCCCACCAGAGGTTTTGACTCCCAAAATGCTTTCTCTTCCTCCGATTGCGATGAGAGTATCGTTTCGGTTTCATCTCCTGTTCACCCACCACCGGAAATCACCGATTGGGTCTCCGATAAGCCACTGCCGGAAAAGGGTAAGCTCTTGCAGGCCGTCATGAAAGCTGGTCCGCTTCTTCAGACTCTGCTTCTCGCTGGACCGCTTCCTCAGTGGAGACATCCACCGCCGCCGCTTGAATCTTTCCACTTGCCGCCGATTGCAATCCCAGTTCCTCCGCCGCCGTCGCTACCACTTCATTCTGAGGCCACTAATTGTGGGATTGTTAACAAAAAGAGGGCTCTGTCTCTTTGTGAGGAATCAGATTCTCCATCAGCAACCAAATTCCAGAGGCTTGTTTTCCACTGACTTTCAACCAAACCCATTAAATTAATCCCCACTAAATTAATTTTACATAATTATATATTAATAGCACTAAGAAAATTAGAATTACACACAC

mRNA sequence

TTTGTTGCATACATCCCGCTTTTCTCGCTGAAATCTGATTCCCTATTCCTCTGTTTATTCTTCAATATCCTCTTTCTCCTCTTTTCCCCTTTTGTTTTTAATGTCCAAACTCTAGTGAAAAATTAACCACATCTCCCAACCCTTCCTCTGCCTTTTCTTTTATAAGAACCTCACCATTCCAAACTCATAATCCCAAATTTCCATTCCCGTTTCTTTATTTCTCTCTAACTCCATGGATAACCAACGCTCCCCTGTTTTAACGTGGGCTTATTTCTTGCAAGCTAATAATATTGATGAGTTACGCCATTCGCTTTTATGCACTACTCTGGAGCTGGAACAGACCAGAATTGCAGTTCAAGAAGAGCTGAAGAAGAGAGATGATCAGGTTTTACATCTCAAGCATTTATTGAATCAAGCCATTAAAGAAAGAGATGAAGCTAATGAAAAATGTGATAAGCTTCTTCTTCAGAAACTCTTTTTCCATCATCATCATCATCATCATCGTCCTCCTCTCTCTGCAATTTCCACCATTGACGACGATCCCACCAGAGGTTTTGACTCCCAAAATGCTTTCTCTTCCTCCGATTGCGATGAGAGTATCGTTTCGGTTTCATCTCCTGTTCACCCACCACCGGAAATCACCGATTGGGTCTCCGATAAGCCACTGCCGGAAAAGGGTAAGCTCTTGCAGGCCGTCATGAAAGCTGGTCCGCTTCTTCAGACTCTGCTTCTCGCTGGACCGCTTCCTCAGTGGAGACATCCACCGCCGCCGCTTGAATCTTTCCACTTGCCGCCGATTGCAATCCCAGTTCCTCCGCCGCCGTCGCTACCACTTCATTCTGAGGCCACTAATTGTGGGATTGTTAACAAAAAGAGGGCTCTGTCTCTTTGTGAGGAATCAGATTCTCCATCAGCAACCAAATTCCAGAGGCTTGTTTTCCACTGACTTTCAACCAAACCCATTAAATTAATCCCCACTAAATTAATTTTACATAATTATATATTAATAGCACTAAGAAAATTAGAATTACACACAC

Coding sequence (CDS)

ATGGATAACCAACGCTCCCCTGTTTTAACGTGGGCTTATTTCTTGCAAGCTAATAATATTGATGAGTTACGCCATTCGCTTTTATGCACTACTCTGGAGCTGGAACAGACCAGAATTGCAGTTCAAGAAGAGCTGAAGAAGAGAGATGATCAGGTTTTACATCTCAAGCATTTATTGAATCAAGCCATTAAAGAAAGAGATGAAGCTAATGAAAAATGTGATAAGCTTCTTCTTCAGAAACTCTTTTTCCATCATCATCATCATCATCATCGTCCTCCTCTCTCTGCAATTTCCACCATTGACGACGATCCCACCAGAGGTTTTGACTCCCAAAATGCTTTCTCTTCCTCCGATTGCGATGAGAGTATCGTTTCGGTTTCATCTCCTGTTCACCCACCACCGGAAATCACCGATTGGGTCTCCGATAAGCCACTGCCGGAAAAGGGTAAGCTCTTGCAGGCCGTCATGAAAGCTGGTCCGCTTCTTCAGACTCTGCTTCTCGCTGGACCGCTTCCTCAGTGGAGACATCCACCGCCGCCGCTTGAATCTTTCCACTTGCCGCCGATTGCAATCCCAGTTCCTCCGCCGCCGTCGCTACCACTTCATTCTGAGGCCACTAATTGTGGGATTGTTAACAAAAAGAGGGCTCTGTCTCTTTGTGAGGAATCAGATTCTCCATCAGCAACCAAATTCCAGAGGCTTGTTTTCCACTGA

Protein sequence

MDNQRSPVLTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKHLLNQAIKERDEANEKCDKLLLQKLFFHHHHHHHRPPLSAISTIDDDPTRGFDSQNAFSSSDCDESIVSVSSPVHPPPEITDWVSDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPPLESFHLPPIAIPVPPPPSLPLHSEATNCGIVNKKRALSLCEESDSPSATKFQRLVFH
Homology
BLAST of Lsi03G001380 vs. ExPASy TrEMBL
Match: A0A1S3CKC5 (arp2/3 complex-activating protein rickA OS=Cucumis melo OX=3656 GN=LOC103501451 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.2e-108
Identity = 206/239 (86.19%), Postives = 218/239 (91.21%), Query Frame = 0

Query: 1   MDNQRSPVLTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKHLLN 60
           MDN RSPV TWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLK+LLN
Sbjct: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKNLLN 60

Query: 61  QAIKERDEANEKCDKLLLQKLFFHHHHHHHRPPLSAISTIDDDPTRGFDSQNAFSSSDCD 120
           QAIKERDEAN+KC+ LLL KLFF+ H        + ISTIDDDPT+ FDSQNAFSSSDCD
Sbjct: 61  QAIKERDEANKKCENLLLHKLFFNQHS-------APISTIDDDPTKAFDSQNAFSSSDCD 120

Query: 121 ESIVSVSSPVHPPPEITDWVSDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPP 180
           ESIVSVSSPV PPPEI+DW+SDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPP
Sbjct: 121 ESIVSVSSPVPPPPEISDWISDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPP 180

Query: 181 LESFHLPPIAIPV--PPPPSLPLHSEATNCGIVNKKRALSLCEESDSPSATKFQRLVFH 238
           LESFHLPP+AIP+  PPPP +P+HSEATNCGIVNKKRALSLCEESDS  ATKFQRLVFH
Sbjct: 181 LESFHLPPVAIPLPPPPPPPVPVHSEATNCGIVNKKRALSLCEESDSLPATKFQRLVFH 232

BLAST of Lsi03G001380 vs. ExPASy TrEMBL
Match: A0A0A0LS86 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097650 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 4.3e-106
Identity = 201/239 (84.10%), Postives = 216/239 (90.38%), Query Frame = 0

Query: 1   MDNQRSPVLTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKHLLN 60
           MDN RSPV TWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELK+RDDQV HLK+LLN
Sbjct: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60

Query: 61  QAIKERDEANEKCDKLLLQKLFFHHHHHHHRPPLSAISTIDDDPTRGFDSQNAFSSSDCD 120
           QAIKERDEAN+KC+ LLL KLFF+ H        + ISTIDDDPT+ FDSQNAFSSSDCD
Sbjct: 61  QAIKERDEANKKCENLLLHKLFFNQHS-------APISTIDDDPTKAFDSQNAFSSSDCD 120

Query: 121 ESIVSVSSPVHPPPEITDWVSDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPP 180
           ESIVSVSSPV PPP+I+DW+SDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPP
Sbjct: 121 ESIVSVSSPVPPPPDISDWISDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPP 180

Query: 181 LESFHLPPIAI--PVPPPPSLPLHSEATNCGIVNKKRALSLCEESDSPSATKFQRLVFH 238
           LESFHLPP+AI  P PPPP +P+HSEAT+CGIVNKKRALSLCEESD+  ATKFQRLVFH
Sbjct: 181 LESFHLPPVAIPHPPPPPPLVPVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH 232

BLAST of Lsi03G001380 vs. ExPASy TrEMBL
Match: A0A5A7V2S7 (Arp2/3 complex-activating protein rickA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00230 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.3e-99
Identity = 196/239 (82.01%), Postives = 208/239 (87.03%), Query Frame = 0

Query: 1   MDNQRSPVLTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKHLLN 60
           MDN RSP           NIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLK+LLN
Sbjct: 1   MDNHRSP-----------NIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKNLLN 60

Query: 61  QAIKERDEANEKCDKLLLQKLFFHHHHHHHRPPLSAISTIDDDPTRGFDSQNAFSSSDCD 120
           QAIKERDEAN+KC+ LLL KLFF+ H        + ISTIDDDPT+ FDSQNAFSSSDCD
Sbjct: 61  QAIKERDEANKKCENLLLHKLFFNQHS-------APISTIDDDPTKAFDSQNAFSSSDCD 120

Query: 121 ESIVSVSSPVHPPPEITDWVSDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPP 180
           ESIVSVSSPV PPPEI+DW+SDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPP
Sbjct: 121 ESIVSVSSPVPPPPEISDWISDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPP 180

Query: 181 LESFHLPPIAIPV--PPPPSLPLHSEATNCGIVNKKRALSLCEESDSPSATKFQRLVFH 238
           LESFHLPP+AIP+  PPPP +P+HSEATNCGIVNKKRALSLCEESDS  ATKFQRLVFH
Sbjct: 181 LESFHLPPVAIPLPPPPPPPVPVHSEATNCGIVNKKRALSLCEESDSLPATKFQRLVFH 221

BLAST of Lsi03G001380 vs. ExPASy TrEMBL
Match: A0A6J1GBI0 (uncharacterized protein LOC111452463 OS=Cucurbita moschata OX=3662 GN=LOC111452463 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.4e-96
Identity = 191/243 (78.60%), Postives = 205/243 (84.36%), Query Frame = 0

Query: 1   MDNQRSPVLTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKHLLN 60
           MDNQRSPVLTWAYFLQ  N+DELRHSLLCTTLELEQT+I VQEEL K+DDQ+LHLK+LLN
Sbjct: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60

Query: 61  QAIKERDEANEKCDKLLLQKLFFHHHH-----HHHRPPLSAISTIDDDPTRGFDSQNAFS 120
           QAI+ERDEANEKC  LLLQKLFFHH H      +  PPLSAISTIDD P +GFDSQNAFS
Sbjct: 61  QAIRERDEANEKCQTLLLQKLFFHHQHPPPPPPNPPPPLSAISTIDDQPRKGFDSQNAFS 120

Query: 121 SSDCDESIVSVSSPVHPPPEITDWVSDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWR 180
           SSDCDESIVS        PEI DWV +KPLPEKGKLLQAVM AGPLL TLLLAGPLPQWR
Sbjct: 121 SSDCDESIVS-------SPEIIDWVPEKPLPEKGKLLQAVMNAGPLLHTLLLAGPLPQWR 180

Query: 181 HPPPPLESFHLPPIAIPVPPP-PSLPLHSEATNCGIVNKKRALSLCEESDSPSATKFQRL 238
           HPPPPLESFHLPP+ IP+PPP PSL      TNCGIVNKKRALSLCE+SDS +ATKFQRL
Sbjct: 181 HPPPPLESFHLPPVTIPLPPPLPSL----ADTNCGIVNKKRALSLCEDSDSQTATKFQRL 232

BLAST of Lsi03G001380 vs. ExPASy TrEMBL
Match: A0A6J1KFK7 (uncharacterized protein LOC111493418 OS=Cucurbita maxima OX=3661 GN=LOC111493418 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 5.8e-95
Identity = 189/243 (77.78%), Postives = 204/243 (83.95%), Query Frame = 0

Query: 1   MDNQRSPVLTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKHLLN 60
           MDNQRSPVLTWAYFLQ  N+DELRHSLLCTTLELEQT+I VQEEL K+DDQ+LHLK+LLN
Sbjct: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60

Query: 61  QAIKERDEANEKCDKLLLQKLFFHHHH-----HHHRPPLSAISTIDDDPTRGFDSQNAFS 120
           QAI+ERDEANEKC  LLLQK+FFHH H         PPLSAISTIDD P +GFDSQNAFS
Sbjct: 61  QAIRERDEANEKCQTLLLQKMFFHHQHPPPPPPPPPPPLSAISTIDDYPRKGFDSQNAFS 120

Query: 121 SSDCDESIVSVSSPVHPPPEITDWVSDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWR 180
           SSDCDESIVS        PEI DWV +KPLPEKGKLLQAVM AGPLL TLLLAGPLPQWR
Sbjct: 121 SSDCDESIVS-------SPEIIDWVPEKPLPEKGKLLQAVMNAGPLLHTLLLAGPLPQWR 180

Query: 181 HPPPPLESFHLPPIAIPVPPP-PSLPLHSEATNCGIVNKKRALSLCEESDSPSATKFQRL 238
           HPPPPLESFHLPP+ IP+PPP PSL      +NCGIVNKKRALSLCE+SDS +ATKFQRL
Sbjct: 181 HPPPPLESFHLPPVTIPLPPPLPSL----ADSNCGIVNKKRALSLCEDSDSQTATKFQRL 232

BLAST of Lsi03G001380 vs. NCBI nr
Match: XP_008463249.1 (PREDICTED: arp2/3 complex-activating protein rickA [Cucumis melo])

HSP 1 Score: 402.5 bits (1033), Expect = 2.5e-108
Identity = 206/239 (86.19%), Postives = 218/239 (91.21%), Query Frame = 0

Query: 1   MDNQRSPVLTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKHLLN 60
           MDN RSPV TWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLK+LLN
Sbjct: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKNLLN 60

Query: 61  QAIKERDEANEKCDKLLLQKLFFHHHHHHHRPPLSAISTIDDDPTRGFDSQNAFSSSDCD 120
           QAIKERDEAN+KC+ LLL KLFF+ H        + ISTIDDDPT+ FDSQNAFSSSDCD
Sbjct: 61  QAIKERDEANKKCENLLLHKLFFNQHS-------APISTIDDDPTKAFDSQNAFSSSDCD 120

Query: 121 ESIVSVSSPVHPPPEITDWVSDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPP 180
           ESIVSVSSPV PPPEI+DW+SDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPP
Sbjct: 121 ESIVSVSSPVPPPPEISDWISDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPP 180

Query: 181 LESFHLPPIAIPV--PPPPSLPLHSEATNCGIVNKKRALSLCEESDSPSATKFQRLVFH 238
           LESFHLPP+AIP+  PPPP +P+HSEATNCGIVNKKRALSLCEESDS  ATKFQRLVFH
Sbjct: 181 LESFHLPPVAIPLPPPPPPPVPVHSEATNCGIVNKKRALSLCEESDSLPATKFQRLVFH 232

BLAST of Lsi03G001380 vs. NCBI nr
Match: XP_004147279.1 (formin-3 [Cucumis sativus] >KGN64785.1 hypothetical protein Csa_013369 [Cucumis sativus])

HSP 1 Score: 394.0 bits (1011), Expect = 8.9e-106
Identity = 201/239 (84.10%), Postives = 216/239 (90.38%), Query Frame = 0

Query: 1   MDNQRSPVLTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKHLLN 60
           MDN RSPV TWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELK+RDDQV HLK+LLN
Sbjct: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60

Query: 61  QAIKERDEANEKCDKLLLQKLFFHHHHHHHRPPLSAISTIDDDPTRGFDSQNAFSSSDCD 120
           QAIKERDEAN+KC+ LLL KLFF+ H        + ISTIDDDPT+ FDSQNAFSSSDCD
Sbjct: 61  QAIKERDEANKKCENLLLHKLFFNQHS-------APISTIDDDPTKAFDSQNAFSSSDCD 120

Query: 121 ESIVSVSSPVHPPPEITDWVSDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPP 180
           ESIVSVSSPV PPP+I+DW+SDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPP
Sbjct: 121 ESIVSVSSPVPPPPDISDWISDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPP 180

Query: 181 LESFHLPPIAI--PVPPPPSLPLHSEATNCGIVNKKRALSLCEESDSPSATKFQRLVFH 238
           LESFHLPP+AI  P PPPP +P+HSEAT+CGIVNKKRALSLCEESD+  ATKFQRLVFH
Sbjct: 181 LESFHLPPVAIPHPPPPPPLVPVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH 232

BLAST of Lsi03G001380 vs. NCBI nr
Match: KAA0062522.1 (arp2/3 complex-activating protein rickA [Cucumis melo var. makuwa] >TYK21378.1 arp2/3 complex-activating protein rickA [Cucumis melo var. makuwa])

HSP 1 Score: 372.5 bits (955), Expect = 2.8e-99
Identity = 196/239 (82.01%), Postives = 208/239 (87.03%), Query Frame = 0

Query: 1   MDNQRSPVLTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKHLLN 60
           MDN RSP           NIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLK+LLN
Sbjct: 1   MDNHRSP-----------NIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKNLLN 60

Query: 61  QAIKERDEANEKCDKLLLQKLFFHHHHHHHRPPLSAISTIDDDPTRGFDSQNAFSSSDCD 120
           QAIKERDEAN+KC+ LLL KLFF+ H        + ISTIDDDPT+ FDSQNAFSSSDCD
Sbjct: 61  QAIKERDEANKKCENLLLHKLFFNQHS-------APISTIDDDPTKAFDSQNAFSSSDCD 120

Query: 121 ESIVSVSSPVHPPPEITDWVSDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPP 180
           ESIVSVSSPV PPPEI+DW+SDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPP
Sbjct: 121 ESIVSVSSPVPPPPEISDWISDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPP 180

Query: 181 LESFHLPPIAIPV--PPPPSLPLHSEATNCGIVNKKRALSLCEESDSPSATKFQRLVFH 238
           LESFHLPP+AIP+  PPPP +P+HSEATNCGIVNKKRALSLCEESDS  ATKFQRLVFH
Sbjct: 181 LESFHLPPVAIPLPPPPPPPVPVHSEATNCGIVNKKRALSLCEESDSLPATKFQRLVFH 221

BLAST of Lsi03G001380 vs. NCBI nr
Match: XP_022948979.1 (uncharacterized protein LOC111452463 [Cucurbita moschata] >KAG6607168.1 hypothetical protein SDJN03_00510, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 361.7 bits (927), Expect = 4.9e-96
Identity = 191/243 (78.60%), Postives = 205/243 (84.36%), Query Frame = 0

Query: 1   MDNQRSPVLTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKHLLN 60
           MDNQRSPVLTWAYFLQ  N+DELRHSLLCTTLELEQT+I VQEEL K+DDQ+LHLK+LLN
Sbjct: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60

Query: 61  QAIKERDEANEKCDKLLLQKLFFHHHH-----HHHRPPLSAISTIDDDPTRGFDSQNAFS 120
           QAI+ERDEANEKC  LLLQKLFFHH H      +  PPLSAISTIDD P +GFDSQNAFS
Sbjct: 61  QAIRERDEANEKCQTLLLQKLFFHHQHPPPPPPNPPPPLSAISTIDDQPRKGFDSQNAFS 120

Query: 121 SSDCDESIVSVSSPVHPPPEITDWVSDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWR 180
           SSDCDESIVS        PEI DWV +KPLPEKGKLLQAVM AGPLL TLLLAGPLPQWR
Sbjct: 121 SSDCDESIVS-------SPEIIDWVPEKPLPEKGKLLQAVMNAGPLLHTLLLAGPLPQWR 180

Query: 181 HPPPPLESFHLPPIAIPVPPP-PSLPLHSEATNCGIVNKKRALSLCEESDSPSATKFQRL 238
           HPPPPLESFHLPP+ IP+PPP PSL      TNCGIVNKKRALSLCE+SDS +ATKFQRL
Sbjct: 181 HPPPPLESFHLPPVTIPLPPPLPSL----ADTNCGIVNKKRALSLCEDSDSQTATKFQRL 232

BLAST of Lsi03G001380 vs. NCBI nr
Match: XP_022998894.1 (uncharacterized protein LOC111493418 [Cucurbita maxima])

HSP 1 Score: 357.1 bits (915), Expect = 1.2e-94
Identity = 189/243 (77.78%), Postives = 204/243 (83.95%), Query Frame = 0

Query: 1   MDNQRSPVLTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKHLLN 60
           MDNQRSPVLTWAYFLQ  N+DELRHSLLCTTLELEQT+I VQEEL K+DDQ+LHLK+LLN
Sbjct: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60

Query: 61  QAIKERDEANEKCDKLLLQKLFFHHHH-----HHHRPPLSAISTIDDDPTRGFDSQNAFS 120
           QAI+ERDEANEKC  LLLQK+FFHH H         PPLSAISTIDD P +GFDSQNAFS
Sbjct: 61  QAIRERDEANEKCQTLLLQKMFFHHQHPPPPPPPPPPPLSAISTIDDYPRKGFDSQNAFS 120

Query: 121 SSDCDESIVSVSSPVHPPPEITDWVSDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWR 180
           SSDCDESIVS        PEI DWV +KPLPEKGKLLQAVM AGPLL TLLLAGPLPQWR
Sbjct: 121 SSDCDESIVS-------SPEIIDWVPEKPLPEKGKLLQAVMNAGPLLHTLLLAGPLPQWR 180

Query: 181 HPPPPLESFHLPPIAIPVPPP-PSLPLHSEATNCGIVNKKRALSLCEESDSPSATKFQRL 238
           HPPPPLESFHLPP+ IP+PPP PSL      +NCGIVNKKRALSLCE+SDS +ATKFQRL
Sbjct: 181 HPPPPLESFHLPPVTIPLPPPLPSL----ADSNCGIVNKKRALSLCEDSDSQTATKFQRL 232

BLAST of Lsi03G001380 vs. TAIR 10
Match: AT5G22930.1 (Protein of unknown function (DUF1635) )

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-51
Identity = 122/253 (48.22%), Postives = 159/253 (62.85%), Query Frame = 0

Query: 1   MDNQRSPVLTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKHLLN 60
           MDNQ + +L W Y+  A   +E+R SLL TTLEL+QT++   EE++KRD+Q++HLK +L 
Sbjct: 1   MDNQSNALLGWPYYSHAKTTEEIRQSLLYTTLELDQTKMFAYEEIRKRDEQLIHLKDILT 60

Query: 61  QAIKERDEANEKCDKLLLQKLFFHHH----HHHHRPPLSAISTIDDDPT--RGFDSQNAF 120
           + IKERDEA EKC     Q+L F  H      H  PPLS  S+I+D+    +   S  +F
Sbjct: 61  KTIKERDEALEKC-----QRLMFDSHSLQQQKHMTPPLSGASSIEDEQVQPQQLRSNKSF 120

Query: 121 SSSDCDESIVSVSSPV-HPPPEITDWVS-----------DKPLPEKGKLLQAVMKAGPLL 180
           SSSDC+ESI+S +  + +PPP   + VS           DKPLPEKGKLLQAV+KAGPLL
Sbjct: 121 SSSDCEESIMSPTDHIMNPPPCQLEEVSGTEIIMDPLLQDKPLPEKGKLLQAVIKAGPLL 180

Query: 181 QTLLLAGPLPQWRHPPPPLESFHLPPIAIPVPPPPSLPLHSEATNCGIVNKKRALSLCEE 236
           QTLLLAGPLPQWRHPPPPL+SF +PP+ +  P             CG  N+KR  S    
Sbjct: 181 QTLLLAGPLPQWRHPPPPLKSFEIPPVTVQCP--------IVNNGCGKFNRKRVFS---- 236

BLAST of Lsi03G001380 vs. TAIR 10
Match: AT3G44940.1 (Protein of unknown function (DUF1635) )

HSP 1 Score: 193.7 bits (491), Expect = 1.6e-49
Identity = 118/258 (45.74%), Postives = 160/258 (62.02%), Query Frame = 0

Query: 3   NQRSPVLTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKHLLNQA 62
           +Q + +L+W YF      +ELR +L+ TT+ELEQT++   EEL+KRD+Q++HL+ +L + 
Sbjct: 2   DQSNSLLSWTYFSHGKTTEELRQTLVYTTMELEQTKLVAHEELRKRDEQLIHLEDVLTKT 61

Query: 63  IKERDEANEKCDKLLLQKLFFHHHHHHHR--------PPLSAISTIDDD-----PTRGFD 122
           +KERDEA EK + LLL  L        ++        PPLS  S+I +D          +
Sbjct: 62  LKERDEALEKYNHLLLNNLLLQQKQQQNQNQKQELVTPPLSGASSIIEDEQVQPQQPQLN 121

Query: 123 SQNAFSSSDCDESIV--SVSSPVHPPPEI--------TDWVSDKPLPEKGKLLQAVMKAG 182
           S  +FSSSD +ESI+  SV  PV    +I           + DKPLPEKGKLLQAV+KAG
Sbjct: 122 SNKSFSSSDTEESIMSPSVIDPVTMNQQIEVSGDEMLATLLPDKPLPEKGKLLQAVIKAG 181

Query: 183 PLLQTLLLAGPLPQWRHPPPPLESFHLPPIAIPVPPPPSLPLHSEATNCGIVNKKRALSL 238
           PLLQTLLLAGPLPQWRHPPPPLE+  +PP+ IP+P         +   CG  NKKRA S+
Sbjct: 182 PLLQTLLLAGPLPQWRHPPPPLETSEIPPVTIPLP-------QFQNNGCGNSNKKRAFSI 241

BLAST of Lsi03G001380 vs. TAIR 10
Match: AT2G28140.1 (Protein of unknown function (DUF1635) )

HSP 1 Score: 163.3 bits (412), Expect = 2.4e-40
Identity = 112/235 (47.66%), Postives = 144/235 (61.28%), Query Frame = 0

Query: 4   QRSPVLTWAYFLQA--NNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKHLLNQ 63
           Q++ +L+W++  Q     I+ELRHSLL TT+ELEQTR+   EEL  +DDQ++ LK LLN+
Sbjct: 5   QQNYLLSWSHQNQCGIKTIEELRHSLLHTTMELEQTRMVASEELIAKDDQIMQLKDLLNK 64

Query: 64  AIKERDEANEKCDKLLLQKLFFHHHHHHHRPPLSAISTIDDDPTRGFDSQNAFSSSDCDE 123
           AIKE+DEA E+  ++LL + F   H           +  + DP     + N F SSD +E
Sbjct: 65  AIKEKDEAQERYKRILLDQNFLLQHQ----------TDEEQDP-----NINGFHSSDGEE 124

Query: 124 SIVSVSSPVHPPPEITDWVSDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPPL 183
           SIV   S   PP EI     +  LPEKGKLL+AV+KAGPLLQTLLLAG LPQWRHPPP L
Sbjct: 125 SIV---SSFEPPVEIELDFPEMTLPEKGKLLKAVVKAGPLLQTLLLAGQLPQWRHPPPQL 184

Query: 184 ESFHLPPIAIPVPPPPSLPLHSEATNCG-IVNKKRALSLCEESDSPSATKFQRLV 236
           ESF +PP+ I    P S        +CG  +N+KR        DS   TK+QRL+
Sbjct: 185 ESFEIPPVIIAEGSPLS------QDSCGNNLNRKRV-----HCDSKRETKYQRLL 210

BLAST of Lsi03G001380 vs. TAIR 10
Match: AT2G28690.1 (Protein of unknown function (DUF1635) )

HSP 1 Score: 98.6 bits (244), Expect = 7.2e-21
Identity = 70/188 (37.23%), Postives = 98/188 (52.13%), Query Frame = 0

Query: 11  WAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKHLLNQAIKERDEAN 70
           W Y     ++DELR  L  ++ ELE  +    EE K   ++V +L HLL  A +ERDEA 
Sbjct: 8   WFY---QESMDELRQKLQYSSFELEAVKAKANEETKLHQEEVKNLLHLLKLARQERDEAK 67

Query: 71  EKCDKLLLQKL---FFHHHHHHHRPPLSAISTIDDDPTRGF----DSQNAFSSSDCDESI 130
           ++  KLL  K        + H   P  S    +       F    +  N     +  + +
Sbjct: 68  DQLQKLLTIKTNSSITESNSHGSSPVDSFFEPVSSSEFSNFNMVPEPINQVKFKNRQQLV 127

Query: 131 VSVSSPVHPPPEITD-WVSDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPPLE 190
                 + P   + D  +  K LPEKGKLLQ VM++GPLLQTLL+AGPLP+WR+PPP  +
Sbjct: 128 NRNLKKIDPVDALMDEIIKGKALPEKGKLLQTVMESGPLLQTLLVAGPLPRWRNPPPLQQ 187

BLAST of Lsi03G001380 vs. TAIR 10
Match: AT5G59760.1 (Protein of unknown function (DUF1635) )

HSP 1 Score: 81.6 bits (200), Expect = 9.1e-16
Identity = 69/202 (34.16%), Postives = 102/202 (50.50%), Query Frame = 0

Query: 8   VLTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKHLLNQAIKERD 67
           VL  + +L   +IDE+R +L  T  ELE  ++   E+ +   ++V  L +LL    +ERD
Sbjct: 3   VLYSSNWLHQESIDEMRQNLQSTLFELETLKMEANEKSRTHREEVNQLLNLLKFTQQERD 62

Query: 68  EANEKCDKLLLQKLFFHHHHHHHRPPLSAISTIDDDPTRGFDSQNAFSSSDCDESIVSVS 127
           EA ++     L +  FH   + +   L+  ++          SQ+  SSS    S +S  
Sbjct: 63  EARQQ-----LSQFIFHTQQNPNSRSLTKSNSFS-------HSQDVSSSS---SSELSTF 122

Query: 128 SPVHPPP-----------------EITDWVSDKPLPEKGKLLQAVMKAGPLLQTLLLAGP 187
             +HP P                  +   V  K  PE GKLL+AV++AGPLL+TLLLAGP
Sbjct: 123 LNIHPQPLTNLEDPTAHNHHQQIDPLDVLVMGKAFPETGKLLKAVVEAGPLLETLLLAGP 182

Query: 188 LPQWRHPPPPLES--FHLPPIA 191
           LP+W +PPP  +S  F LP I+
Sbjct: 183 LPKWINPPPQTQSQRFELPSIS 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3CKC51.2e-10886.19arp2/3 complex-activating protein rickA OS=Cucumis melo OX=3656 GN=LOC103501451 ... [more]
A0A0A0LS864.3e-10684.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097650 PE=4 SV=1[more]
A0A5A7V2S71.3e-9982.01Arp2/3 complex-activating protein rickA OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A6J1GBI02.4e-9678.60uncharacterized protein LOC111452463 OS=Cucurbita moschata OX=3662 GN=LOC1114524... [more]
A0A6J1KFK75.8e-9577.78uncharacterized protein LOC111493418 OS=Cucurbita maxima OX=3661 GN=LOC111493418... [more]
Match NameE-valueIdentityDescription
XP_008463249.12.5e-10886.19PREDICTED: arp2/3 complex-activating protein rickA [Cucumis melo][more]
XP_004147279.18.9e-10684.10formin-3 [Cucumis sativus] >KGN64785.1 hypothetical protein Csa_013369 [Cucumis ... [more]
KAA0062522.12.8e-9982.01arp2/3 complex-activating protein rickA [Cucumis melo var. makuwa] >TYK21378.1 a... [more]
XP_022948979.14.9e-9678.60uncharacterized protein LOC111452463 [Cucurbita moschata] >KAG6607168.1 hypothet... [more]
XP_022998894.11.2e-9477.78uncharacterized protein LOC111493418 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT5G22930.11.0e-5148.22Protein of unknown function (DUF1635) [more]
AT3G44940.11.6e-4945.74Protein of unknown function (DUF1635) [more]
AT2G28140.12.4e-4047.66Protein of unknown function (DUF1635) [more]
AT2G28690.17.2e-2137.23Protein of unknown function (DUF1635) [more]
AT5G59760.19.1e-1634.16Protein of unknown function (DUF1635) [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 52..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..124
NoneNo IPR availablePANTHERPTHR33431:SF3ENABLED-LIKE PROTEIN (DUF1635)coord: 6..235
IPR012862Protein of unknown function DUF1635PFAMPF07795DUF1635coord: 19..234
e-value: 8.7E-83
score: 277.6
IPR012862Protein of unknown function DUF1635PANTHERPTHR33431ENABLED-LIKE PROTEIN (DUF1635)coord: 6..235

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G001380.1Lsi03G001380.1mRNA