Lsi03G001330 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G001330
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Copper ion binding isoform 3
Location	chr03: 1842922 .. 1845218 (+)
RNA-Seq Expression	Lsi03G001330
Synteny	Lsi03G001330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTACAAATTTAATGGGAGTTTTGTAAGGGTTGTGGGGTCCATTTATATTCTGTTATTTCCATTTACATTTTGTTATTTCCTGTTAGTAGAATTTAGTTGGGAAGATTGTATGCTGAATGTAATTTAAGGGGAAGAGCGCTTTGAGTTGTCGGTATCTTTGACTTGGTGTTGCTAAATTTTCGATGAAATATTTCTTTTTAGACTTCTTCGATGATTATGCTTGTGATTCGCTAGACTATTAGCAATTCAAGTTTTCCTAGATATCAATCCAAGTATAAATTGATACCAGGTTATCTTGGTGAGAACCAAGGTCGAACACATGGATTTTTATATGACTAAAACTTTGCTTATAACGAAAATCTCGAGGACAATGAAAATAATTTGAGGATTCGTGATTAAAAACTAATTTAAAAATACTTGAAAAACAACTAAACGAGATGGTTGAGTTAACAATGCAATCTTAGTGTGACAGTGATAGAGAAGAAGAGTGTTGGGGACTGTTATTCATCAATACATCGAACATCTAGCTAATTATATCGATCGTTCTTTCAAACACCTTTGGTTCATACCTGTCGGCAGAAACGCCACATTAATCATATTTCTATGATGCGTGCCAGTTTGAATGGATCTAAGGCAAAACTTATTTCTAAGACTATCCTATGATCTACAGTAATGCAATCGTTAAAGACTTACTTTGTCAAGCAGTCAACAAAAGAAAACAATCTTGTAAATGATCAATAAACTTTACTCGATTTCAACAATATTAATTGTTACAGCCCCCAACCCTCGTGAAGGTTTAGTTACTCATTTTAGCTGTAAAAATGTATGAGAATAGAAAGTTCAACATTGAAGAAATTATGCAAACATAAAACTCTATATTGATGAGCAAACAATGAAAGTAGAAATTGTTAGCAAGAAATGTCTAGCTAGCCAACAAAGCTACAATGATACTGAGATTGCGAGTAGTGGATGCTGATAACAATGGAGATTTCGCCTCTCTCGAGCCAGAATCTGTCGCCAGTCGCAACGCCTTAGGATGTTCTACAGCCGTCGCTGTGAAGAAGGTAAGCAGGTGTGTAGAGGCGCTCCACAGAAAAGTGAGATTTCCTAATTACCCTAATTGTCGTCGTCTGTTTTGCTTTTATAGGCGCTATTATGGTGCTTTCCATCTTTGGTGCAGGTGGGACCACAACGCGTTCTGCTTTGACTTTTCTGATCGCGCTTTCCGCCTCTGTCTAACGGTTTCTACTATAAAGGTTCTCTCCAGCTGTCATGATTGGCTGGCCATGCGTTGATAATGTTCTCGCCGCATGGTTGCTCTGAAGCTGCCCTGCACATAAAACATTCAAGTGTCAATTCTTATCAATAATATCGCATATTGTCTTTTTCATACACTTACGCGTAGTATGAGAATATATTAAGGAATCATGCGTTGAAATGCCTTTCTTTTCACTAATCATTCATTTATTCTAATACAAAGAAGTAAAATAACTTGTATTTCTACAAGTTATCACTTGGTCTGTATTTTCTTTTGGGTTCTCTTAGGAGAAATTGAGAGAGACGGGAAGCTCTCAAAACTTTCCATTATATATGTTGATAAATAAAATTGGTGGCTGAGTTCTATCGCACAACATACATCTAGGTGTGGTAATATAATTTTTCTTTCTTCTTTTGTGAGCTAAATGTTCTTATCTTCTAAGCTACAAATGCATTGTGTTTCTAGGGACCTAAACCAGAAGAAAAGGCAGGAGGGTCAGTAACTGATTCCATTCCAAGTGGCTCAGCCTCAGCATCAGGAGCATCAACAGAGAAAATATCTACTGACAAACACCGCAATTATGTTGTTGTAGCTGGAACTGTGACTATTCTTGGTGCTCTTGGATGGTATCTCAAATCTAAAAAGAAGCCAGAAGAAGTCTAGGATTGAGTTAACAAATGATATCATCAGCATCTGAATCATGGGGGGAAGGCGAGTTCTCTCCTTTCCTCTACTGAATAAACCAAAAATTGAGATGTCGTATGGATCTTGGTTACTAAATATATTCTGCTGTTTAGACTTACGTTTCTCTTTGAAAATAGTTTTCTTGGCCTTATTTCTGTTTACTTCCCTGAAAAATTAACCCTTAGAGACAGTTACAGCATGGAACATACTCTGTGACCAAGACTTGGTTTATTGGATTTCAATTTCACATTCTCTTCCATAAGATTGAGTAAATACTACTGTTCTATCGTTTCTAACGTGGTTTTCTAAAAAAGAAAATACACGCCGTTACCATTACTTTGTGAAAAAT

mRNA sequence

ATGGATGGACCTAAACCAGAAGAAAAGGCAGGAGGGTCAGTAACTGATTCCATTCCAAGTGGCTCAGCCTCAGCATCAGGAGCATCAACAGAGAAAATATCTACTGACAAACACCGCAATTATGTTGTTGTAGCTGGAACTGTGACTATTCTTGGTGCTCTTGGATGGTATCTCAAATCTAAAAAGAAGCCAGAAGAAGTCTAGGATTGAGTTAACAAATGATATCATCAGCATCTGAATCATGGGGGGAAGGCGAGTTCTCTCCTTTCCTCTACTGAATAAACCAAAAATTGAGATGTCGTATGGATCTTGGTTACTAAATATATTCTGCTGTTTAGACTTACGTTTCTCTTTGAAAATAGTTTTCTTGGCCTTATTTCTGTTTACTTCCCTGAAAAATTAACCCTTAGAGACAGTTACAGCATGGAACATACTCTGTGACCAAGACTTGGTTTATTGGATTTCAATTTCACATTCTCTTCCATAAGATTGAGTAAATACTACTGTTCTATCGTTTCTAACGTGGTTTTCTAAAAAAGAAAATACACGCCGTTACCATTACTTTGTGAAAAAT

Coding sequence (CDS)

ATGGATGGACCTAAACCAGAAGAAAAGGCAGGAGGGTCAGTAACTGATTCCATTCCAAGTGGCTCAGCCTCAGCATCAGGAGCATCAACAGAGAAAATATCTACTGACAAACACCGCAATTATGTTGTTGTAGCTGGAACTGTGACTATTCTTGGTGCTCTTGGATGGTATCTCAAATCTAAAAAGAAGCCAGAAGAAGTCTAG

Protein sequence

MDGPKPEEKAGGSVTDSIPSGSASASGASTEKISTDKHRNYVVVAGTVTILGALGWYLKSKKKPEEV

Homology

[Close]

BLAST of Lsi03G001330 vs. ExPASy Swiss-Prot
Match: Q9ZUX4 (Uncharacterized protein At2g27730, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g27730 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.0e-09
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 6   PEEKAGGSVTDS-IPSGSASASGASTEKISTDKHRNYVVVAGTVTILGALGWYLKS--KK 65
           P E+A GS +++ +   +ASAS  S  K+S DK+RNY VVAG V I+G++GWYLK+  KK
Sbjct: 48  PGEQAAGSASEAKVAGATASASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKK 107

[Close]

BLAST of Lsi03G001330 vs. ExPASy TrEMBL
Match: A0A6J1CMV3 (uncharacterized protein At2g27730, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111012716 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.2e-22
Identity = 59/67 (88.06%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 3   GPKPEEKAGGSVTDSIPSG--SASASGASTEKISTDKHRNYVVVAGTVTILGALGWYLKS 62
           GPKPEEK GGS  DSIPSG  SASASGAS EKISTDKHRNY VVAGTVTILGA+GWYLKS
Sbjct: 49  GPKPEEKPGGSAADSIPSGSASASASGASAEKISTDKHRNYAVVAGTVTILGAVGWYLKS 108

Query: 63  KKKPEEV 68
           KKKPEEV
Sbjct: 109 KKKPEEV 115

[Close]

BLAST of Lsi03G001330 vs. ExPASy TrEMBL
Match: A0A6J1HVU8 (uncharacterized protein At2g27730, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111466619 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.3e-19
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 3   GPKPEEKAGGSVTDSIPSGSA-SASGASTEKISTDKHRNYVVVAGTVTILGALGWYLKSK 62
           GPKPEEK   SV +SIPSGSA SASGASTEKIS+DK+RNY VVAGTVTI GALGWYLKSK
Sbjct: 49  GPKPEEKPVESVAESIPSGSASSASGASTEKISSDKYRNYAVVAGTVTIFGALGWYLKSK 108

Query: 63  KKPEEV 68
           KKPEEV
Sbjct: 109 KKPEEV 114

[Close]

BLAST of Lsi03G001330 vs. ExPASy TrEMBL
Match: A0A0A0LT33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165210 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.3e-19
Identity = 58/67 (86.57%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 3   GPKPEEKAGGSVTDSIP-SGSASASGA-STEKISTDKHRNYVVVAGTVTILGALGWYLKS 62
           GPKPEEK G SV DS+P S SASASGA STEKISTDK RNY VVAGTVTILGALGWYLKS
Sbjct: 49  GPKPEEKLGESVADSVPSSSSASASGASSTEKISTDKQRNYAVVAGTVTILGALGWYLKS 108

Query: 63  KKKPEEV 68
           KKKPEEV
Sbjct: 109 KKKPEEV 115

[Close]

BLAST of Lsi03G001330 vs. ExPASy TrEMBL
Match: A0A5A7T219 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002960 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.3e-19
Identity = 57/75 (76.00%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 3   GPKPEEKAGGSVTDSIP----------SGSASASGASTEKISTDKHRNYVVVAGTVTILG 62
           GPKPEEK G SV DS+P          S SASASGAS+EKISTDK RNY VVAGTVTILG
Sbjct: 49  GPKPEEKIGESVADSVPSSSASGSSSASASASASGASSEKISTDKQRNYAVVAGTVTILG 108

Query: 63  ALGWYLKSKKKPEEV 68
           ALGWYLKSKKKPEEV
Sbjct: 109 ALGWYLKSKKKPEEV 123

[Close]

BLAST of Lsi03G001330 vs. ExPASy TrEMBL
Match: A0A1S3CEE3 (uncharacterized protein At2g27730, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103499925 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.3e-19
Identity = 57/75 (76.00%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 3   GPKPEEKAGGSVTDSIP----------SGSASASGASTEKISTDKHRNYVVVAGTVTILG 62
           GPKPEEK G SV DS+P          S SASASGAS+EKISTDK RNY VVAGTVTILG
Sbjct: 49  GPKPEEKIGESVADSVPSSSASGSSSASASASASGASSEKISTDKQRNYAVVAGTVTILG 108

Query: 63  ALGWYLKSKKKPEEV 68
           ALGWYLKSKKKPEEV
Sbjct: 109 ALGWYLKSKKKPEEV 123

[Close]

BLAST of Lsi03G001330 vs. NCBI nr
Match: XP_038893784.1 (uncharacterized protein At2g27730, mitochondrial-like [Benincasa hispida] >XP_038893785.1 uncharacterized protein At2g27730, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 124.0 bits (310), Expect = 4.8e-25
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 3   GPKPEEKAGGSVTDSIPSGSASASGASTEKISTDKHRNYVVVAGTVTILGALGWYLKSKK 62
           GPKPEEKAGGSVTDSIPSGSASASGASTEKIS+DKHRNY VVAGTVTILGALGWYLKSKK
Sbjct: 49  GPKPEEKAGGSVTDSIPSGSASASGASTEKISSDKHRNYAVVAGTVTILGALGWYLKSKK 108

Query: 63  KPEEV 68
           KPEEV
Sbjct: 109 KPEEV 113

[Close]

BLAST of Lsi03G001330 vs. NCBI nr
Match: XP_022142661.1 (uncharacterized protein At2g27730, mitochondrial [Momordica charantia] >XP_022142662.1 uncharacterized protein At2g27730, mitochondrial [Momordica charantia])

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 59/67 (88.06%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 3   GPKPEEKAGGSVTDSIPSG--SASASGASTEKISTDKHRNYVVVAGTVTILGALGWYLKS 62
           GPKPEEK GGS  DSIPSG  SASASGAS EKISTDKHRNY VVAGTVTILGA+GWYLKS
Sbjct: 49  GPKPEEKPGGSAADSIPSGSASASASGASAEKISTDKHRNYAVVAGTVTILGAVGWYLKS 108

Query: 63  KKKPEEV 68
           KKKPEEV
Sbjct: 109 KKKPEEV 115

[Close]

BLAST of Lsi03G001330 vs. NCBI nr
Match: XP_038895664.1 (uncharacterized protein At2g27730, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 58/66 (87.88%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 3   GPKPEEKAGGSVTDSIPSGSASA-SGASTEKISTDKHRNYVVVAGTVTILGALGWYLKSK 62
           GPKPEEK  GSV  S+PSGSASA SGASTEKIS+DKHRNY VVAGTVTILGALGWYLKSK
Sbjct: 49  GPKPEEKLEGSVAGSVPSGSASAPSGASTEKISSDKHRNYAVVAGTVTILGALGWYLKSK 108

Query: 63  KKPEEV 68
           KKPEEV
Sbjct: 109 KKPEEV 114

[Close]

BLAST of Lsi03G001330 vs. NCBI nr
Match: XP_004139491.1 (uncharacterized protein At2g27730, mitochondrial [Cucumis sativus] >KGN64938.1 hypothetical protein Csa_022688 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 6.8e-19
Identity = 58/67 (86.57%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 3   GPKPEEKAGGSVTDSIP-SGSASASGA-STEKISTDKHRNYVVVAGTVTILGALGWYLKS 62
           GPKPEEK G SV DS+P S SASASGA STEKISTDK RNY VVAGTVTILGALGWYLKS
Sbjct: 49  GPKPEEKLGESVADSVPSSSSASASGASSTEKISTDKQRNYAVVAGTVTILGALGWYLKS 108

Query: 63  KKKPEEV 68
           KKKPEEV
Sbjct: 109 KKKPEEV 115

[Close]

BLAST of Lsi03G001330 vs. NCBI nr
Match: XP_022967119.1 (uncharacterized protein At2g27730, mitochondrial [Cucurbita maxima])

HSP 1 Score: 103.6 bits (257), Expect = 6.8e-19
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 3   GPKPEEKAGGSVTDSIPSGSA-SASGASTEKISTDKHRNYVVVAGTVTILGALGWYLKSK 62
           GPKPEEK   SV +SIPSGSA SASGASTEKIS+DK+RNY VVAGTVTI GALGWYLKSK
Sbjct: 49  GPKPEEKPVESVAESIPSGSASSASGASTEKISSDKYRNYAVVAGTVTIFGALGWYLKSK 108

Query: 63  KKPEEV 68
           KKPEEV
Sbjct: 109 KKPEEV 114

[Close]

BLAST of Lsi03G001330 vs. TAIR 10
Match: AT2G27730.1 (copper ion binding )

HSP 1 Score: 61.2 bits (147), Expect = 3.6e-10
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 6   PEEKAGGSVTDS-IPSGSASASGASTEKISTDKHRNYVVVAGTVTILGALGWYLKS--KK 65
           P E+A GS +++ +   +ASAS  S  K+S DK+RNY VVAG V I+G++GWYLK+  KK
Sbjct: 48  PGEQAAGSASEAKVAGATASASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKK 107

The following BLAST results are available for this feature:

BLAST of Lsi03G001330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZUX4	5.0e-09	52.38	Uncharacterized protein At2g27730, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Lsi03G001330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CMV3	9.2e-22	88.06	uncharacterized protein At2g27730, mitochondrial OS=Momordica charantia OX=3673 ...	[more]
A0A6J1HVU8	3.3e-19	84.85	uncharacterized protein At2g27730, mitochondrial OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A0A0LT33	3.3e-19	86.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165210 PE=4 SV=1	[more]
A0A5A7T219	4.3e-19	76.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CEE3	4.3e-19	76.00	uncharacterized protein At2g27730, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Lsi03G001330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893784.1	4.8e-25	96.92	uncharacterized protein At2g27730, mitochondrial-like [Benincasa hispida] >XP_03...	[more]
XP_022142661.1	1.9e-21	88.06	uncharacterized protein At2g27730, mitochondrial [Momordica charantia] >XP_02214...	[more]
XP_038895664.1	1.2e-20	87.88	uncharacterized protein At2g27730, mitochondrial-like [Benincasa hispida]	[more]
XP_004139491.1	6.8e-19	86.57	uncharacterized protein At2g27730, mitochondrial [Cucumis sativus] >KGN64938.1 h...	[more]
XP_022967119.1	6.8e-19	84.85	uncharacterized protein At2g27730, mitochondrial [Cucurbita maxima]	[more]

BLAST of Lsi03G001330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27730.1	3.6e-10	52.38	copper ion binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR33878	OS08G0559000 PROTEIN	coord: 3..66
None	No IPR available	PANTHER	PTHR33878:SF1	OS08G0559000 PROTEIN	coord: 3..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G001330.1	Lsi03G001330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005747	mitochondrial respiratory chain complex I