Lsi03G001060 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G001060
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	histidine-containing phosphotransfer protein 2-like
Location	chr03: 1472302 .. 1473351 (+)
RNA-Seq Expression	Lsi03G001060
Synteny	Lsi03G001060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACCAAGTTTCTTTAGTGCAGAGAGCTGTGACTTTCAGAAAGCAAAAACTTAGAAGAACAATCCATTAATCCAAAGAAAACTTCTCCCAATGTCGGCGTCGGCGCCTTCCTCTTCCGTTCTCCCACAGCCGGAACATCCTCACATAATCATGATCCAGAAATTCATTGACGCTTTGCAAAAACAGGTGAATCGTCTTCTTCAATCTAAACTCTGTTTTTTCCTCTCTCTTTGTTTCGATTCGTTTTTCTTTGCGTGTTCTTGAGTTTCGATGACTTAATTTCTTGCAGGGATTTCTTGACGAGAACTTCAATAACTTGAGAAATCTCCCTGAGAATCAAAACTCCTTGGTTACATTCTGCAGTGACGCTGAACCTAAGCTCGAAATTATTGAGAAAGCTCTGTAATGATTCAAATCCATAAACTGATCCTTCTCTGTATTATTACGTTCTTTCGATTTTTTTTCTTGTGAATCGTTTTGATTATTTTAGGGGAAGCGAGCATGTGGATTTTCGTACTGCGTTAAACACCGTGGAAATGATCAGATCTGGTGCCGTTAGGTAAGGCCGATCAATTCAATTTCAATTCTTGTTTCCTTTTTTCGTTTTGAAAAGTGAATTTGGGGATAATTTAGAAAGATTTTTGTGTATAATTATGAATTTAATAGGGTTGGTGGAAGTCGAGTAGTAAGTGCTTGTACTGATTTTCAACAACATTGCAATGACAATAACATTCAGCGGTAATTAAGAGTGTTAATTAACTTAATTAATTCTTTAAACAACATGAAATGATTATTATTGTCACTTGTACTTTGCCAGTTCATATGATGCTTACAAGAAGCTCCACTGGGAATTCTATGTTTTACGTGATTGTTTCCACCATATTCTTCAGGTTAGGTTCTTTTTGAATTTATTACCATTTTCTCTTTTGAATCTTGAAATTAATTACAAAAATTTTAATGCATCTTTTGGTTTGTTAATTTGTTTTTGTGATGGTAACAGGCAGAGAGGATAGCGTGAACAGATTAGTGATGAAGAAAACATGATTTGGA

mRNA sequence

CCACCAAGTTTCTTTAGTGCAGAGAGCTGTGACTTTCAGAAAGCAAAAACTTAGAAGAACAATCCATTAATCCAAAGAAAACTTCTCCCAATGTCGGCGTCGGCGCCTTCCTCTTCCGTTCTCCCACAGCCGGAACATCCTCACATAATCATGATCCAGAAATTCATTGACGCTTTGCAAAAACAGGGATTTCTTGACGAGAACTTCAATAACTTGAGAAATCTCCCTGAGAATCAAAACTCCTTGGTTACATTCTGCAGTGACGCTGAACCTAAGCTCGAAATTATTGAGAAAGCTCTGGGAAGCGAGCATGTGGATTTTCGTACTGCGTTAAACACCGTGGAAATGATCAGATCTGGTGCCGTTAGGGTTGGTGGAAGTCGAGTAGTAAGTGCTTGTACTGATTTTCAACAACATTGCAATGACAATAACATTCAGCGTTCATATGATGCTTACAAGAAGCTCCACTGGGAATTCTATGTTTTACGTGATTGTTTCCACCATATTCTTCAGGCAGAGAGGATAGCGTGAACAGATTAGTGATGAAGAAAACATGATTTGGA

Coding sequence (CDS)

ATGTCGGCGTCGGCGCCTTCCTCTTCCGTTCTCCCACAGCCGGAACATCCTCACATAATCATGATCCAGAAATTCATTGACGCTTTGCAAAAACAGGGATTTCTTGACGAGAACTTCAATAACTTGAGAAATCTCCCTGAGAATCAAAACTCCTTGGTTACATTCTGCAGTGACGCTGAACCTAAGCTCGAAATTATTGAGAAAGCTCTGGGAAGCGAGCATGTGGATTTTCGTACTGCGTTAAACACCGTGGAAATGATCAGATCTGGTGCCGTTAGGGTTGGTGGAAGTCGAGTAGTAAGTGCTTGTACTGATTTTCAACAACATTGCAATGACAATAACATTCAGCGTTCATATGATGCTTACAAGAAGCTCCACTGGGAATTCTATGTTTTACGTGATTGTTTCCACCATATTCTTCAGGCAGAGAGGATAGCGTGA

Protein sequence

MSASAPSSSVLPQPEHPHIIMIQKFIDALQKQGFLDENFNNLRNLPENQNSLVTFCSDAEPKLEIIEKALGSEHVDFRTALNTVEMIRSGAVRVGGSRVVSACTDFQQHCNDNNIQRSYDAYKKLHWEFYVLRDCFHHILQAERIA

Homology

[Close]

BLAST of Lsi03G001060 vs. ExPASy TrEMBL
Match: A0A5D3CFG6 (Histidine-containing phosphotransfer protein 5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G001140 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.4e-45
Identity = 95/144 (65.97%), Postives = 112/144 (77.78%), Query Frame = 0


Query: 1   MSASAPSSSVLPQPEHPHIIMIQKFIDALQKQGFLDENFNNLRNLPENQNSLVTFCSDAE 60
           MSA+A SSS  PQP      MI KFIDAL++QGFLD +FNN R  P + +SLVTFC ++E
Sbjct: 1   MSAAASSSSSHPQPPRSQQQMIHKFIDALRQQGFLDNDFNNRRTAPGHLDSLVTFCVESE 60

Query: 61  PKLEIIEKALGSEHVDFRTALNTVEMIRSGAVRVGGSRVVSACTDFQQHCNDNNIQRSYD 120
           PKLEII+KAL  EHVDFRTA+NT EMIRS A RVGGSRV SAC   Q+H N+NN+  S +
Sbjct: 61  PKLEIIQKALEGEHVDFRTAINTSEMIRSAATRVGGSRVASACIALQEHLNNNNLNGSKE 120

Query: 121 AYKKLHWEFYVLRDCFHHILQAER 145
           AYKKL WE+YV+RD FHHILQAE+
Sbjct: 121 AYKKLSWEYYVIRDSFHHILQAEK 144

[Close]

BLAST of Lsi03G001060 vs. ExPASy TrEMBL
Match: A0A1S3CFS8 (histidine-containing phosphotransfer protein 5-like OS=Cucumis melo OX=3656 GN=LOC103500231 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.4e-45
Identity = 95/144 (65.97%), Postives = 112/144 (77.78%), Query Frame = 0


Query: 1   MSASAPSSSVLPQPEHPHIIMIQKFIDALQKQGFLDENFNNLRNLPENQNSLVTFCSDAE 60
           MSA+A SSS  PQP      MI KFIDAL++QGFLD +FNN R  P + +SLVTFC ++E
Sbjct: 1   MSAAASSSSSHPQPPRSQQQMIHKFIDALRQQGFLDNDFNNRRTAPGHLDSLVTFCVESE 60

Query: 61  PKLEIIEKALGSEHVDFRTALNTVEMIRSGAVRVGGSRVVSACTDFQQHCNDNNIQRSYD 120
           PKLEII+KAL  EHVDFRTA+NT EMIRS A RVGGSRV SAC   Q+H N+NN+  S +
Sbjct: 61  PKLEIIQKALEGEHVDFRTAINTSEMIRSAATRVGGSRVASACIALQEHLNNNNLNGSKE 120

Query: 121 AYKKLHWEFYVLRDCFHHILQAER 145
           AYKKL WE+YV+RD FHHILQAE+
Sbjct: 121 AYKKLSWEYYVIRDSFHHILQAEK 144

[Close]

BLAST of Lsi03G001060 vs. ExPASy TrEMBL
Match: A0A0A0LVC3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G153540 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 4.1e-43
Identity = 90/144 (62.50%), Postives = 112/144 (77.78%), Query Frame = 0


Query: 1   MSASAPSSSVLPQPEHPHIIMIQKFIDALQKQGFLDENFNNLRNLPENQNSLVTFCSDAE 60
           MSA+A SSS   QP      MI KFIDAL++QGFLD++FNN R  P + +SLVTFC ++E
Sbjct: 1   MSAAASSSSSHSQPPRSQQQMIHKFIDALRQQGFLDDDFNNRRTAPGHLDSLVTFCVESE 60

Query: 61  PKLEIIEKALGSEHVDFRTALNTVEMIRSGAVRVGGSRVVSACTDFQQHCNDNNIQRSYD 120
           PKLEII+K+L  EH+DFRTA++T EMIRS A RVGGSRV SAC   Q+H N+NN+  S +
Sbjct: 61  PKLEIIQKSLEGEHLDFRTAISTAEMIRSAAARVGGSRVASACIALQEHLNNNNLNGSKE 120

Query: 121 AYKKLHWEFYVLRDCFHHILQAER 145
           AYKKL WE+YV+RD FHH+LQAE+
Sbjct: 121 AYKKLSWEYYVIRDSFHHMLQAEK 144

[Close]

BLAST of Lsi03G001060 vs. ExPASy TrEMBL
Match: A0A6J1HYV4 (histidine-containing phosphotransfer protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111469346 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 8.1e-39
Identity = 83/152 (54.61%), Postives = 106/152 (69.74%), Query Frame = 0


Query: 1   MSASAPSSSVLPQP--------EHPHIIMIQKFIDALQKQGFLDENFNNLRNLPENQNSL 60
           MSAS  SS+  P P        +HP   MI+KFI AL++QGFLD+NFNN  NL EN+NSL
Sbjct: 1   MSASTSSSAPAPAPASGSSTASDHPQRHMIRKFIQALREQGFLDDNFNNQMNLHENRNSL 60

Query: 61  VTFCSDAEPKLEIIEKALGSEHVDFRTALNTVEMIRSGAVRVGGSRVVSACTDFQQHCND 120
            TFC DAEPKL+ +EK L  E V+F T +N +E +++ A  VGG R+ +AC + Q  C D
Sbjct: 61  ATFCGDAEPKLDRVEKLLARETVEFDTVMNLMESLKTNAAGVGGKRLSTACAEMQDLCTD 120

Query: 121 NNIQRSYDAYKKLHWEFYVLRDCFHHILQAER 145
           NN +   +AY+K+ WE+YVLRDCFHHILQAER
Sbjct: 121 NNAEPLQEAYRKVTWEYYVLRDCFHHILQAER 152

[Close]

BLAST of Lsi03G001060 vs. ExPASy TrEMBL
Match: A0A6J1EVY2 (histidine-containing phosphotransfer protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111436519 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.4e-38
Identity = 84/152 (55.26%), Postives = 105/152 (69.08%), Query Frame = 0


Query: 1   MSASAPSSSVLPQP--------EHPHIIMIQKFIDALQKQGFLDENFNNLRNLPENQNSL 60
           MSAS  SS+  P P        +HP   MI+KFI AL++QGFLD+NFNN  NL EN+NSL
Sbjct: 33  MSASTSSSAPAPAPASGSSTASDHPQRHMIRKFIQALREQGFLDDNFNNQMNLHENRNSL 92

Query: 61  VTFCSDAEPKLEIIEKALGSEHVDFRTALNTVEMIRSGAVRVGGSRVVSACTDFQQHCND 120
            TFC DAEPKL+ +EK L  E V+F T  N +E +++ A  VGG R+ +AC D Q  C D
Sbjct: 93  ATFCGDAEPKLDRVEKLLARETVEFDTVSNLMESLKTKAAGVGGKRLSTACADMQDLCTD 152

Query: 121 NNIQRSYDAYKKLHWEFYVLRDCFHHILQAER 145
           NN +   +AY+K+ WE+YVLRDCFHHILQAER
Sbjct: 153 NNAEPLQEAYRKVTWEYYVLRDCFHHILQAER 184

[Close]

BLAST of Lsi03G001060 vs. NCBI nr
Match: XP_038895515.1 (histidine-containing phosphotransfer protein 1-like [Benincasa hispida])

HSP 1 Score: 217.2 bits (552), Expect = 9.1e-53
Identity = 108/146 (73.97%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 1   MSASAPSSSVLPQPE--HPHIIMIQKFIDALQKQGFLDENFNNLRNLPENQNSLVTFCSD 60
           MSASA SSS  P     HPH  MI+KFIDAL++QGFLDE+FN  RNLPENQ+SL  FC +
Sbjct: 1   MSASASSSSSRPPAGMLHPHRFMIEKFIDALREQGFLDEDFNKRRNLPENQDSLARFCGE 60

Query: 61  AEPKLEIIEKALGSEHVDFRTALNTVEMIRSGAVRVGGSRVVSACTDFQQHCNDNNIQRS 120
           AEPKLE IEKAL SE+VDFR+ +NTVEMIRSGA RVGG+RV SACTD QQHCN NNI+ S
Sbjct: 61  AEPKLETIEKALASENVDFRSVINTVEMIRSGAARVGGTRVASACTDLQQHCNSNNIEGS 120

Query: 121 YDAYKKLHWEFYVLRDCFHHILQAER 145
             AYKKL WE+YVLRDCFHHILQAER
Sbjct: 121 NAAYKKLSWEYYVLRDCFHHILQAER 146

[Close]

BLAST of Lsi03G001060 vs. NCBI nr
Match: XP_008461693.1 (PREDICTED: histidine-containing phosphotransfer protein 5-like [Cucumis melo] >KAA0040904.1 histidine-containing phosphotransfer protein 5-like [Cucumis melo var. makuwa] >TYK10633.1 histidine-containing phosphotransfer protein 5-like [Cucumis melo var. makuwa])

HSP 1 Score: 191.0 bits (484), Expect = 7.0e-45
Identity = 95/144 (65.97%), Postives = 112/144 (77.78%), Query Frame = 0


Query: 1   MSASAPSSSVLPQPEHPHIIMIQKFIDALQKQGFLDENFNNLRNLPENQNSLVTFCSDAE 60
           MSA+A SSS  PQP      MI KFIDAL++QGFLD +FNN R  P + +SLVTFC ++E
Sbjct: 1   MSAAASSSSSHPQPPRSQQQMIHKFIDALRQQGFLDNDFNNRRTAPGHLDSLVTFCVESE 60

Query: 61  PKLEIIEKALGSEHVDFRTALNTVEMIRSGAVRVGGSRVVSACTDFQQHCNDNNIQRSYD 120
           PKLEII+KAL  EHVDFRTA+NT EMIRS A RVGGSRV SAC   Q+H N+NN+  S +
Sbjct: 61  PKLEIIQKALEGEHVDFRTAINTSEMIRSAATRVGGSRVASACIALQEHLNNNNLNGSKE 120

Query: 121 AYKKLHWEFYVLRDCFHHILQAER 145
           AYKKL WE+YV+RD FHHILQAE+
Sbjct: 121 AYKKLSWEYYVIRDSFHHILQAEK 144

[Close]

BLAST of Lsi03G001060 vs. NCBI nr
Match: XP_031736154.1 (histidine-containing phosphotransfer protein 1-like [Cucumis sativus] >KGN64909.1 hypothetical protein Csa_022883 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 8.6e-43
Identity = 90/144 (62.50%), Postives = 112/144 (77.78%), Query Frame = 0


Query: 1   MSASAPSSSVLPQPEHPHIIMIQKFIDALQKQGFLDENFNNLRNLPENQNSLVTFCSDAE 60
           MSA+A SSS   QP      MI KFIDAL++QGFLD++FNN R  P + +SLVTFC ++E
Sbjct: 1   MSAAASSSSSHSQPPRSQQQMIHKFIDALRQQGFLDDDFNNRRTAPGHLDSLVTFCVESE 60

Query: 61  PKLEIIEKALGSEHVDFRTALNTVEMIRSGAVRVGGSRVVSACTDFQQHCNDNNIQRSYD 120
           PKLEII+K+L  EH+DFRTA++T EMIRS A RVGGSRV SAC   Q+H N+NN+  S +
Sbjct: 61  PKLEIIQKSLEGEHLDFRTAISTAEMIRSAAARVGGSRVASACIALQEHLNNNNLNGSKE 120

Query: 121 AYKKLHWEFYVLRDCFHHILQAER 145
           AYKKL WE+YV+RD FHH+LQAE+
Sbjct: 121 AYKKLSWEYYVIRDSFHHMLQAEK 144

[Close]

BLAST of Lsi03G001060 vs. NCBI nr
Match: XP_022970357.1 (histidine-containing phosphotransfer protein 2-like [Cucurbita maxima])

HSP 1 Score: 169.9 bits (429), Expect = 1.7e-38
Identity = 83/152 (54.61%), Postives = 106/152 (69.74%), Query Frame = 0


Query: 1   MSASAPSSSVLPQP--------EHPHIIMIQKFIDALQKQGFLDENFNNLRNLPENQNSL 60
           MSAS  SS+  P P        +HP   MI+KFI AL++QGFLD+NFNN  NL EN+NSL
Sbjct: 1   MSASTSSSAPAPAPASGSSTASDHPQRHMIRKFIQALREQGFLDDNFNNQMNLHENRNSL 60

Query: 61  VTFCSDAEPKLEIIEKALGSEHVDFRTALNTVEMIRSGAVRVGGSRVVSACTDFQQHCND 120
            TFC DAEPKL+ +EK L  E V+F T +N +E +++ A  VGG R+ +AC + Q  C D
Sbjct: 61  ATFCGDAEPKLDRVEKLLARETVEFDTVMNLMESLKTNAAGVGGKRLSTACAEMQDLCTD 120

Query: 121 NNIQRSYDAYKKLHWEFYVLRDCFHHILQAER 145
           NN +   +AY+K+ WE+YVLRDCFHHILQAER
Sbjct: 121 NNAEPLQEAYRKVTWEYYVLRDCFHHILQAER 152

[Close]

BLAST of Lsi03G001060 vs. NCBI nr
Match: KAG6583641.1 (Histidine-containing phosphotransfer protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.1 bits (427), Expect = 2.9e-38
Identity = 84/152 (55.26%), Postives = 105/152 (69.08%), Query Frame = 0


Query: 1   MSASAPSSSVLPQP--------EHPHIIMIQKFIDALQKQGFLDENFNNLRNLPENQNSL 60
           MSAS  SS+  P P        +HP   MI+KFI AL++QGFLD+NFNN  NL EN+NSL
Sbjct: 42  MSASTSSSAPAPAPASGSSTASDHPQRHMIRKFIQALREQGFLDDNFNNQMNLHENRNSL 101

Query: 61  VTFCSDAEPKLEIIEKALGSEHVDFRTALNTVEMIRSGAVRVGGSRVVSACTDFQQHCND 120
            TFC DAEPKL+ +EK L  E V+F T  N +E +++ A  VGG R+ +AC D Q  C D
Sbjct: 102 ATFCGDAEPKLDRVEKLLARETVEFDTVSNLMESLKTKAAGVGGKRLSTACADMQDLCTD 161

Query: 121 NNIQRSYDAYKKLHWEFYVLRDCFHHILQAER 145
           NN +   +AY+K+ WE+YVLRDCFHHILQAER
Sbjct: 162 NNAEPLQEAYRKVTWEYYVLRDCFHHILQAER 193

The following BLAST results are available for this feature:

BLAST of Lsi03G001060 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G001060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFG6	3.4e-45	65.97	Histidine-containing phosphotransfer protein 5-like OS=Cucumis melo var. makuwa ...	[more]
A0A1S3CFS8	3.4e-45	65.97	histidine-containing phosphotransfer protein 5-like OS=Cucumis melo OX=3656 GN=L...	[more]
A0A0A0LVC3	4.1e-43	62.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G153540 PE=4 SV=1	[more]
A0A6J1HYV4	8.1e-39	54.61	histidine-containing phosphotransfer protein 2-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1EVY2	1.4e-38	55.26	histidine-containing phosphotransfer protein 2-like OS=Cucurbita moschata OX=366...	[more]

BLAST of Lsi03G001060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895515.1	9.1e-53	73.97	histidine-containing phosphotransfer protein 1-like [Benincasa hispida]	[more]
XP_008461693.1	7.0e-45	65.97	PREDICTED: histidine-containing phosphotransfer protein 5-like [Cucumis melo] >K...	[more]
XP_031736154.1	8.6e-43	62.50	histidine-containing phosphotransfer protein 1-like [Cucumis sativus] >KGN64909....	[more]
XP_022970357.1	1.7e-38	54.61	histidine-containing phosphotransfer protein 2-like [Cucurbita maxima]	[more]
KAG6583641.1	2.9e-38	55.26	Histidine-containing phosphotransfer protein 2, partial [Cucurbita argyrosperma ...	[more]

BLAST of Lsi03G001060 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036641	HPT domain superfamily	GENE3D	1.20.120.160	HPT domain	coord: 21..146 e-value: 2.5E-18 score: 68.3
IPR036641	HPT domain superfamily	SUPERFAMILY	47226	Histidine-containing phosphotransfer domain, HPT domain	coord: 28..142
None	No IPR available	PANTHER	PTHR28242:SF30	HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 2	coord: 22..144
None	No IPR available	PANTHER	PTHR28242	FAMILY NOT NAMED	coord: 22..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G001060.1	Lsi03G001060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
cellular_component	GO:0005737	cytoplasm