Lsi03G001000 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G001000
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L22, chloroplastic
Locationchr03: 1406259 .. 1410618 (+)
RNA-Seq ExpressionLsi03G001000
SyntenyLsi03G001000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGTTGGCAGAGATATATACGGTCCATGCTTGGCCATGTTCAAAAGAGAGTGGAATCGAGTTACAGTTTAGCTGCAAACTCTAGTAATCGTTTGCAATCCTCTCTTTCATATGGTGAGTTGTATTTTCTTTCGATTGAATGTATGAATTACACCAGACCTTCCTCTAGCCCATTCAAGCTTTAGTTTTCATCTAAGCTTTCTTTCAATTGAATGTAAGAAATGGGTTTTACTTTTGAAATATGTTTTAGGTGTATGTGTCATTTATATTATTTTTTATATTTGTGGTTTTTTAATAATATAAATTATTTTAATAAAAAATATCATGAACTACCCTACTACTTGGATTAGTTAGTCTCATACTTCTTACTCTTGTACTAACCAGTATGTCAATTTAATTCTTAAATTATAATTTCATCCAACTAAATTTTGAACATAAATCCGGCTACTGGGAATTATTTTGAGATACAACTTGATGCTTTTGGGAACTAACTCTTTTTTGGTTTTTGTTCTTGAATAAAAGTTGCGGTTGGACCCTTTTTAGAATAGTTTAAGTTGTTATACCTTCTAAAATCATTAAGGTATGGATATTGATTTGATGAAGTATGAAATGACATTAACCACTTCAATCTACTTCAAAGTTGTTCTTAAGAGTTGAAAGTGGTTGAGAAAACAAAGCAGGAAGTTGTTTCAAAACAACTTCCAAACAACCCTTTAGTGATTGGGACATTGTAAAAACCTTCCTCTCAATGCCTTCCCCCCCCCACCCACAGGTGACGTTGGTCGATCATCCTTCTCTTCTCCTTCCCCCGCCTTTGACCACCCTCTCATCCCCATTCATTATGGCCCGTACCACAAAACTCTCCATCACTATGCACGAGGATGAAGCTAGTAATGGGAATCATGCCCACATCATATGTGAGAGGACACAAGAAGCATGCAATCTTCACCATGACCTTTGGTTTGATAGCATCATCTCCTCCATTGGTGAATCCTGTAGAGGTATCCTAGACATTGCTAAGAAACATCTTCGAGCGCATTTGATGGACCTTGTAATAGAGGCCAAGGGTAACCCACTCAGGTTTCTTCCGATTGACTTAAATATCCTTCCACATCTCTTTCGAGCCATCTTATAAGTTAAAGGTTTCAGTCTGAATTGGAGAAGATGGATGGATGGTTGTGTTTCAAGTGTAAATTACTCTAAATTGTAAATGGTAGACCAAGTTGCAAAATGATTCCCACTAGAGGCATTAAAGATGGAGACTCACTCTCTCTGTTCCTTTTCATATATAGTTTAGTTGCTGAATTCCTCACTCGTCTTCTCACATATGGCTCTCAGAAGGGTTTTTATCGAGGGTTCTTTTTATTTTATTTTTATTTTTAAATAAGAAACATATCAAGGGGGTTTCAACCTAACAAATGCTCTCATCAACATCAACCACATTCAATGCGCTGGCGATACCTTACTTTTCTCCACTTTTTAGCTAGATAAGATTGTCGATCTATTATCTTCTTTTCACATTTTTTAAAAGGCTTCAGGGTTTTCCAACAATGGAGAAGTAAAAAGAAGATTGGATGTGTGAGAATTAATTCTCACAAATCCTTCTCCCGTTGGTGACTCAGTCTTTGATGTTTTGTGGAGGATTGCACTAGATCTGTGAGGAATTTTAATGACTTTTTCGAGTGTGGTAAGTTGGTTGATTCTCCTATGTTGAATGGTTTGTTTATTGGGGCTAATTGTAGAGTGAGAAGTAGGATTGATAGATTTTTGCTGCTTTTGGATTGGGTTGAGTTGTTTGGTGAGGTTTGGCACGTGGCTGGCCTGGAGTTACTCTTGATCATTGGCCTATTATCCTAAATTCGGGAAGTCAGAAATGGGAGCCAAGCCCTCTCGCTTTGAGAATTTGTGGCTTCAACATCCTTCTTTTAAAGCCCATCTCCCTATGTGGTGGAGTTCTCTAGTTCAGGGGAGATGGGAAGGGTATCGGTTTATGGGTAAGTTGAGGGCCTTGAATGGGGAACTTAAGATTTGGAATAGAGAAATTTTTGGGGACATTAGGTTTAAGAAGCGTGAGCTTTTGGCTATGATTAAAGGTTTGGATGATTTGGAGGTGGAGGGTCTACTGGACGAGGCGTTGAAAGAGGAGAGGGTGTGCCTAACATATTAGTTTGCTGAGGTGGTTAGAAAGGAAACTTGTGCTTGGAGGCAAAAGGTGAAGGCGACTTGGGCTAAAAATTGACTTTTCATTGAATATGAAGGCTATTGTGCAGAATGTTTACCCAAAAAAGATAGAATTCTTTCTTTGGGAGCTATCTCACAGGTCAATAAACAATTATGATAGGCTTTCGAAGCATCTACTTTACATGAATCTTTCCCCAAATCGATGCATCCTTTGGAAACATGATTTGGAGTCACAGAGCCACGTTTTCATAACTTGCCCTATTGCTCACAGGTTTTGGAAGGATATGTTGATGACATTCAGCTGGTTGGTGGTCCTCCTAAATGATCCTTTCATTCTTCTAAATCGCTTTCTCTTGGGCCATCCTTCCAAAGACAAGAAGGAGATCCTACGGAAGAATTTATTTTTTACTTTCTTCTTGTACTTTTCTGTAGTCACTATCAGTATGGTCAGAAAGAAATCGGATTTTTGGAACCAAGGAAAGGGCCTAAGGACGTTTTTGACAATGTTCTTTTCTTGCCTTTATCTTGATGTAATTATAAATTGAATTCTCATAGCCATAGCTTTGCTTCTCTTTTGTCCCATTGAAGAAGTTTAATGTAACTTCTTTGGATTTTGGTTTTTCTCTCGTCCTTTTCCATTTTATTTTATTAAAATTTCATACATCAACGAAATGATCTATTATGTAGAAAAACTTCTGGTTTGAACATCAATCTTAGCAAATATGAGTTTTTGGGCATTCACTTGGACATCTCCTCCATGGACTCTATTGCCTCTTTTGTTGGCTACAACGTTGGTGTTTGGCCTAACTCTTACCTCGGCATTCCCCTCGGTGGAAAACCGTGCTCAGTCACCTTTCCGAAGCCTATTGTTGAGAAAATTGAGAGTATGCTCAGAAATTGGGAGCATGCCTTCATATGAAAAGGTGGTGTCTGACTGACTAACTCTTTTCGAAGCCAATCTACCTCCAAAATTGCCCCGAAGATTGAAAAGCTCATGAGAAATTTTCTGTGGGAAGGCCCCATGTGAAGGGTGGCTCTCACCTTGTTCAATGGAAGAAGGGTCAAAAACCTATATCCTGTGGTGGCTCGGTATTGATAACATCAAGAAATAGGGCACCCCTTGCCAAATGGGTTTGGAGATAATTGGAGAATATGATGCTCTTTCTGTTGATGTTCATGCTCTCTAATGCAAGGTCATTGAGGCTAAATATGGCCTCTCAAAAGCAGTCTGAAGTAGTCATCCACAGCTTTATGATGGAGGTAGGATTAGGGTAATTTAGATAAATTCCTAGGTTTCTGTTCTGTAGCTTCAATTGGTCCTTGGTAGTCCCTTCAAACTGGGTTGATTTTAGTAAGTCCATCTTCTTGCGGCGCCCTTTAAGACTAAGAGAGGAGAAGCTTACTCTTTGGTGAACTTATTCAGGACATTTTTTTTGGAAGTTGTGGCCTGAAAGGAATAACAACACTTTCAAAGGCCATGAAGAATCTTTTGATGCTTTAAATTCTGTCATCTTTATGGTTCTTTACTGGTGTAAATGCTCAAAGTCACATCCTTTCTCAATGTCTGTTGACACTTTCGGCCGGATGTCTTTTTTGTAACTCCATTTTTGTGCTCTTGGGACTTTTCCCTTGTTTTGTAATTATCTAGTTCGTCAGACAAATAATTTCCTCTCAAAAAGAGAAAAATGGAAAAGAAAAAAGAAAAAAAGAAAAGAAAACAGAAAAGTGAAAAAGGAAGAGAGATCTTGTACGGCGGTTACGGTTGGAGTGCAATAAAAGAGGTTTTGAAGATGAAGTTGATGATTTTAGACAGGAGTTGGAGTAAGAAAGAAAAAACATACCAACATGAAAGATTTGATAACTTTCCTTCTCTTACCACTTTATTGGATTGGTTGCTATCCTGGTAACTCGTCTTTCTAAGAAGACTCCCTCTTCAAAATGTTTATCCTATTAGTTAGTAATTACAGAAGTGGTTTGCATCTGACTAAAATCAGTAGAACCATGACAGAATCTTAAAATTGAAGTTCCTGAGTTGCACCAATTTCTTATGCAGGGGAATTGCCTTATTTACAGAGGCTTTTGAAGCCATCCTCAGCGGGCATTGCACAACCTGATTTTCGGTGTCTCCAACAGATGGTACACATGGAAGCCATATCATCCACTGAATCTCTATGA

mRNA sequence

ATGGTTGGTTGGCAGAGATATATACGGTCCATGCTTGGCCATGTTCAAAAGAGAGTGGAATCGAGTTACAGTTTAGCTGCAAACTCTAGTAATCGTTTGCAATCCTCTCTTTCATATGGTGAGTTGTATTTTCTTTCGATTGAATGTGTATGTGTGACGTTGGTCGATCATCCTTCTCTTCTCCTTCCCCCGCCTTTGACCACCCTCTCATCCCCATTCATTATGGCCCGTACCACAAAACTCTCCATCACTATGCACGAGGATGAAGCTAGTAATGGGAATCATGCCCACATCATATGTGAGAGGACACAAGAAGCATGCAATCTTCACCATGACCTTTGGTTTGATAGCATCATCTCCTCCATTGGTGAATCCTGTAGAGGTATCCTAGACATTGCTAAGAAACATCTTCGAGCGCATTTGATGGACCTTGTAATAGAGGCCAAGGTCTTTGATGTTTTGTGGAGGATTGCACTAGATCTCTTCAATTGGTCCTTGGTAGTCCCTTCAAACTGGGTTGATTTTAGGGAATTGCCTTATTTACAGAGGCTTTTGAAGCCATCCTCAGCGGGCATTGCACAACCTGATTTTCGGTGTCTCCAACAGATGGTACACATGGAAGCCATATCATCCACTGAATCTCTATGA

Coding sequence (CDS)

ATGGTTGGTTGGCAGAGATATATACGGTCCATGCTTGGCCATGTTCAAAAGAGAGTGGAATCGAGTTACAGTTTAGCTGCAAACTCTAGTAATCGTTTGCAATCCTCTCTTTCATATGGTGAGTTGTATTTTCTTTCGATTGAATGTGTATGTGTGACGTTGGTCGATCATCCTTCTCTTCTCCTTCCCCCGCCTTTGACCACCCTCTCATCCCCATTCATTATGGCCCGTACCACAAAACTCTCCATCACTATGCACGAGGATGAAGCTAGTAATGGGAATCATGCCCACATCATATGTGAGAGGACACAAGAAGCATGCAATCTTCACCATGACCTTTGGTTTGATAGCATCATCTCCTCCATTGGTGAATCCTGTAGAGGTATCCTAGACATTGCTAAGAAACATCTTCGAGCGCATTTGATGGACCTTGTAATAGAGGCCAAGGTCTTTGATGTTTTGTGGAGGATTGCACTAGATCTCTTCAATTGGTCCTTGGTAGTCCCTTCAAACTGGGTTGATTTTAGGGAATTGCCTTATTTACAGAGGCTTTTGAAGCCATCCTCAGCGGGCATTGCACAACCTGATTTTCGGTGTCTCCAACAGATGGTACACATGGAAGCCATATCATCCACTGAATCTCTATGA

Protein sequence

MVGWQRYIRSMLGHVQKRVESSYSLAANSSNRLQSSLSYGELYFLSIECVCVTLVDHPSLLLPPPLTTLSSPFIMARTTKLSITMHEDEASNGNHAHIICERTQEACNLHHDLWFDSIISSIGESCRGILDIAKKHLRAHLMDLVIEAKVFDVLWRIALDLFNWSLVVPSNWVDFRELPYLQRLLKPSSAGIAQPDFRCLQQMVHMEAISSTESL
Homology
[Close]
BLAST of Lsi03G001000 vs. ExPASy TrEMBL
Match: A0A6J1DVK1 (50S ribosomal protein L22, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024848 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.4e-09
Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 1  MVGWQRYIRSMLGHVQKRVESSYSLAANSS-NRLQSSLSYGELYFL 46
          MVGWQRY+RSMLGHVQKRVE SY++AANS+  RLQSSLSYGEL +L
Sbjct: 1  MVGWQRYVRSMLGHVQKRVELSYNVAANSNCYRLQSSLSYGELPYL 46

[Close]
BLAST of Lsi03G001000 vs. ExPASy TrEMBL
Match: A0A5A7TGY1 (50S ribosomal protein L22, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G00340 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 44/94 (46.81%), Postives = 56/94 (59.57%), Query Frame = 0 

Query: 124 ESC--RGILDIAKKHLRAHLMDLVIEAKVFDVLWRIALDLFNWSLVVPSNWVDFRELPYL 183
           ESC  +GI  ++       ++ ++    +F VL  +A+ +   S   P N    RELPYL
Sbjct: 69  ESCGLKGITTLSNALNNLLVLQILSSLWLFTVL--VAILVTPLSKRTPLNVYPIRELPYL 128

Query: 184 QRLLKPSSAGIAQPDFRCLQQMVHMEAISSTESL 216
           QRLLKPSSAGIAQPDFRCLQQM     ISS+  L
Sbjct: 129 QRLLKPSSAGIAQPDFRCLQQM----GISSSRML 156

[Close]
BLAST of Lsi03G001000 vs. ExPASy TrEMBL
Match: A0A0A0LVB7 (50S ribosomal protein L22, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G153000 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.5e-06
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 0 

Query: 1   MVGWQRYIRSMLGHVQKRVESSYSLAANSSNRLQSSLSYGELYFL--------------S 60
           MVGWQR +RSMLGH+Q +VE SY+ A+NSS RLQSSLS GEL +L               
Sbjct: 1   MVGWQRCLRSMLGHLQNKVELSYNAASNSSYRLQSSLSNGELPYLQRLLKPSSAVIAQPD 60

Query: 61  IECVCVTLVDHPSLLL-PPPLTTLSSPFIMARTTKLSITMHEDEASNGNHAHIICERTQ 105
             C+    +    +LL   P   +SSP     T+ L+++  +D   +     +IC+R+Q
Sbjct: 61  FRCLQQMGISSSRMLLADKPEEAVSSPL----TSALALSSGKD--GDKTDQKVICKRSQ 113

[Close]
BLAST of Lsi03G001000 vs. ExPASy TrEMBL
Match: A0A5D3CJM9 (50S ribosomal protein L22, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00940 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.0e-06
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 176 RELPYLQRLLKPSSAGIAQPDFRCLQQMVHMEAISSTESL 216
           RELPYLQRLLKPSSAGIAQPDFRCLQQM     ISS+  L
Sbjct: 46  RELPYLQRLLKPSSAGIAQPDFRCLQQM----GISSSRML 81

[Close]
BLAST of Lsi03G001000 vs. ExPASy TrEMBL
Match: A0A1S4E5G5 (50S ribosomal protein L22, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107992071 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 1  MVGWQRYIRSMLGHVQKRVESSYSLAANSSNRLQSSLSYGELYFL 46
          MV WQR +RS+LGH+Q +VE SY+ A+NSS RLQSSLS GEL +L
Sbjct: 1  MVSWQRCLRSILGHLQNKVELSYNAASNSSYRLQSSLSNGELPYL 45

[Close]
BLAST of Lsi03G001000 vs. NCBI nr
Match: XP_038894802.1 (50S ribosomal protein L22, chloroplastic-like [Benincasa hispida] >XP_038894803.1 50S ribosomal protein L22, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 82.4 bits (202), Expect = 5.2e-12
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 1  MVGWQRYIRSMLGHVQKRVESSYSLAANSSNRLQSSLSYGELYFL 46
          MVGWQRYIRSMLGHVQKRVESSYSLAANSS RLQSSLSYGEL +L
Sbjct: 1  MVGWQRYIRSMLGHVQKRVESSYSLAANSSYRLQSSLSYGELPYL 45

[Close]
BLAST of Lsi03G001000 vs. NCBI nr
Match: XP_022158339.1 (uncharacterized protein LOC111024848 [Momordica charantia] >XP_022158340.1 uncharacterized protein LOC111024848 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 9.1e-09
Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 1  MVGWQRYIRSMLGHVQKRVESSYSLAANSS-NRLQSSLSYGELYFL 46
          MVGWQRY+RSMLGHVQKRVE SY++AANS+  RLQSSLSYGEL +L
Sbjct: 1  MVGWQRYVRSMLGHVQKRVELSYNVAANSNCYRLQSSLSYGELPYL 46

[Close]
BLAST of Lsi03G001000 vs. NCBI nr
Match: KAA0040921.1 (50S ribosomal protein L22 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-07
Identity = 44/94 (46.81%), Postives = 56/94 (59.57%), Query Frame = 0 

Query: 124 ESC--RGILDIAKKHLRAHLMDLVIEAKVFDVLWRIALDLFNWSLVVPSNWVDFRELPYL 183
           ESC  +GI  ++       ++ ++    +F VL  +A+ +   S   P N    RELPYL
Sbjct: 69  ESCGLKGITTLSNALNNLLVLQILSSLWLFTVL--VAILVTPLSKRTPLNVYPIRELPYL 128

Query: 184 QRLLKPSSAGIAQPDFRCLQQMVHMEAISSTESL 216
           QRLLKPSSAGIAQPDFRCLQQM     ISS+  L
Sbjct: 129 QRLLKPSSAGIAQPDFRCLQQM----GISSSRML 156

[Close]
BLAST of Lsi03G001000 vs. NCBI nr
Match: XP_031735947.1 (uncharacterized protein LOC116401688 [Cucumis sativus] >KGN64904.1 hypothetical protein Csa_022819 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 7.2e-06
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 0 

Query: 1   MVGWQRYIRSMLGHVQKRVESSYSLAANSSNRLQSSLSYGELYFL--------------S 60
           MVGWQR +RSMLGH+Q +VE SY+ A+NSS RLQSSLS GEL +L               
Sbjct: 1   MVGWQRCLRSMLGHLQNKVELSYNAASNSSYRLQSSLSNGELPYLQRLLKPSSAVIAQPD 60

Query: 61  IECVCVTLVDHPSLLL-PPPLTTLSSPFIMARTTKLSITMHEDEASNGNHAHIICERTQ 105
             C+    +    +LL   P   +SSP     T+ L+++  +D   +     +IC+R+Q
Sbjct: 61  FRCLQQMGISSSRMLLADKPEEAVSSPL----TSALALSSGKD--GDKTDQKVICKRSQ 113

[Close]
BLAST of Lsi03G001000 vs. NCBI nr
Match: TYK10616.1 (50S ribosomal protein L22 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-05
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 176 RELPYLQRLLKPSSAGIAQPDFRCLQQMVHMEAISSTESL 216
           RELPYLQRLLKPSSAGIAQPDFRCLQQM     ISS+  L
Sbjct: 46  RELPYLQRLLKPSSAGIAQPDFRCLQQM----GISSSRML 81

The following BLAST results are available for this feature:
BLAST of Lsi03G001000 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi03G001000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DVK14.4e-0980.4350S ribosomal protein L22, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A5A7TGY11.4e-0746.8150S ribosomal protein L22, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A0A0LVB73.5e-0638.6650S ribosomal protein L22, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G153... [more]
A0A5D3CJM96.0e-0680.0050S ribosomal protein L22, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S4E5G51.3e-0566.6750S ribosomal protein L22, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107992071... [more]
BLAST of Lsi03G001000 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038894802.15.2e-1293.3350S ribosomal protein L22, chloroplastic-like [Benincasa hispida] >XP_038894803.... [more]
XP_022158339.19.1e-0980.43uncharacterized protein LOC111024848 [Momordica charantia] >XP_022158340.1 uncha... [more]
KAA0040921.12.9e-0746.8150S ribosomal protein L22 [Cucumis melo var. makuwa][more]
XP_031735947.17.2e-0638.66uncharacterized protein LOC116401688 [Cucumis sativus] >KGN64904.1 hypothetical ... [more]
TYK10616.11.2e-0580.0050S ribosomal protein L22 [Cucumis melo var. makuwa][more]
BLAST of Lsi03G001000 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G001000.1Lsi03G001000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome