Lsi03G000410 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G000410
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	LOW QUALITY PROTEIN: uncharacterized protein LOC116190061
Location	chr03: 714978 .. 719015 (-)
RNA-Seq Expression	Lsi03G000410
Synteny	Lsi03G000410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAAGATTGTAATAATATTCAAATAGGAAGAGGGGAGAAGGCTAAGTAAGCTCCGCCCCCTTACTCTCTCTCTATAAAAAAAGCGAAGGAGAAAGGAATGCTTCTCGCTCCAGAAATACGAGCGTTGAACCAGCGGACGATACCATTCTTCTGGGCGAAGCCTCCTCCAACCAAAAAAGCCAGATGCTGAAAGGTAATCCTTGATCATTTTCGCTGCAGGGGAGGCTAATATGAATGAAAGAAATAAAAAGGTATTCTTTTTTCAATACGATTTTCCCGACGAAAGGTTTCAGTCAGTTAGCTCATCATAAATAGATTAACCGACGAGTGATCTCGGCAGAAAATTCTCCACCGATGGAATGAGGACATAGCAAAGAAGATCCTAGCTAGAGAGCGGCCCCTTTCGAACCAGAGTGCCCTCACTGGGGGGTTTGCTTCTATTCGGTATTTGGTTAGTAAAGCTTTGCTTACCTTGAAGAGCCCTTCAGTGAGAAGCCCTTCTTTCTTGGGAAAGGTTTCCGATCAGCGAGCACCCCGCACACAGGATCGTAGGCAGCAGTGGCCGACCAGTAGGTCTTTTGGGCATTCGGATTCGGAAGTTATAGGTTGTTTGCCAGTGACTGGCTTATTGCTCTTATGGTAGGGCAGTAGCAATCAGCCTCCATAGGAGCTTTCATGCGACTCCTATGACTACTCAATCGATTAGCATAAACTAAGGGAAGAGGATTTCCCCCGGTAACCTAGCTCGCTTCGTCGCATTCGGAAGGAGAAAGGTTTGTTCTTTAATGTGATATAAAAGTGATTTTCCAGCTTGCTTGAAAACCTCGTTATTACAGAGCGGTGGCTCTGGAACATTTTACAGAGATAAGATAACTGTCTTAGTACTGCTTTAAGTGGTAGTATCCTATGCAACTCTCCCCATGCTTAATCTCTTCAATAATTACAGACACCCTATCTTGACTTTAGGTTTCAGTTTCTAATGAAACTCTTTTCCATCTTGGCTTTTTCCTTGTTTTTTCCATCTGCTTCTGCTCAAAACCATTTGGTTTGTCAAACCCATTAGATTCGGGCTGTTATCGCTCTTGGGAAGTAGATTTAGGTATGGGAATTGATCTAAGTTAGGGTCTTGATGACTAAAGCTCATCAACCCTAATTAATACTTCGTCGTTTCGCCGCTACGCTACGATACCTCCGTTCGGTAAAAGGTGATACCATCTGAGCCTTACTCCTTTCGGATCCTTCTGCGCCTATCGGTGAATATGTATACTTTAGAAGGTTGAGATGATCTCTTGTATACAATTAGGGATGGAGAGTCAAAAATGCCAGCTTGAATGAGCTGATGATACCCTGACTCCTCTTTGGTTTATGACCCAGCTCTATATAAATTGGTAACTCACTTCGTGAAGTGTTACTGTTGCTGTGATTCTGCGGGTTCGGAAAGTCTCTTCCCTGTTCGCCTATATAAATAAAGTACCTTACCCTCGCCCTCGGGCTGTTAGCTGCGTAGCGACTACAATACAGAAAGGAATTCGGGTGAAGGTTCCTTGAGAACAACGACTAAAAGCTGTTTGCCTAACTTTGAAAAGAAAGAAAATAATAGAGACCCTCATGGAATGAAGAAGCTAAAGGGAAGGGTTCTTCGATCAAGACCTATCAACAGGATTCCCAACGCGTGAGAGGTTAGTGCCAGCTACACTAGCTGAAAATCTCTTAATATCAGGGATTCCGCATTCATAGTTATATCCCCCCTGACACTGGAATGTGTAATGAAGCATCACAGCTTTATCAAGAAAGGGGGTAAGCCTCCGTTATCAAATCGGCTGTTCTTTGATCAGCTGCTATGGGAAGTGGTATCCGGGAAATGTTGGGAGCAGCTACTTTCTTCTAGTAGTATGCCAGAAGAGAAGACCGATGAGCCTTACCAGAAGTGAAGTAAAGAATACCGACAATCTTGCCGCAACCTTATCGACTACCTACTTGTATGTTGCTTTCATAATACGACCATGGACAAGAGGGACACCCAGGTATTTACCCAAGTTACTAGTAGCACCAATACCCAGTTCGGAACTCAAACATCTGCTATTAGATTTTCTTTTTGGAGAAACAAACAATTTCGATTTATCCAATCGGGAAATGAGCTAGCACCGGGATAATAGGAGGCCAGTCCAGACACAGCTTCCAAGCCCACTTTTGACTTAATAAGATAGGCGAAGAGTATTTATAGGCAAAGTAGCGTAGCGACGAACAGCCCGATAAGGGTATTTATAGGTGAGCCGCCAGGCGAACTGGCGTGGCCGTAAGGCAAAGAGGACGATTACGGTACATATGGATCACCTCGTAGGGATCTCCCCCGGTTGGTACGTACGCGCGGTTCTTTATGTTGGCTCATTGCTTGCATGATCTTTCTTTTATCTTGTTTTCCCTCTGGACTACTTGACACACATGCGCTGAGTTACTTATGAAAAAGCCGTCTACTCATTTCATTGTTAGCGAGTAGGTGGCAGCTAAATTGAGCCTCGTGTCTCCATCGGGGTACCCCACCTGACCGATATATGAGGCCCGCGGACTCACGTTTTACCCTTTAGAGTTATGGTTGGGCTGCGGGATACTTGGGGGGTCGGAGGATTTACCGGTCACGGGCAACCGTAGAACCAACGAGCATCCCGCAGGCGAGGAACCAAAGAAGCGAATAGAAAAGTGAAAAGAAAGAAAGCACCCAACAGCAAATTTATTTTTGAAAGTATACTGATCTTGAGCCTACCCGAGCGAAAGCGGAGTCTCCAGAGATCAATCAACCGGGCGCCTCCAAAGCTGTATCCAAGTTGTAATAAAAGAAAGAAGAAAGAATAAGAATCCAACTAGAGAACTGAAGCTTCCCAAGACCACTTACGGTAAGGTGCGCTGGGCACGAATCCAGTAGCCAGTTTCCCTAGCAGGCGGGTCACACGTACTATAACAATCATTTGAAAAAAGAAAATAAACAAACAACAGACTAACTATACTAGCAAACCAAGAAAGCACAAACCTTACGTCATAGGGGCAAGTTGAAGAAGGGTTTGGGTTCCGAGGAGCTACCAGAGCAGGGGGTTTTAACTGCCCTGATAGCCGGGAAGAGCCTTAGACTTCCGCCGGAGTTCCCGCAGGGACAGGCCAAACCAACCCAGGAACTTCACCAGCAAACTCCACACGTCGACCCAGGAGGTGAGGTCTCCCAACGCTGCCGATTGGATTGGATGCCCTGAGTCATTTGGTTTTGACGCGTGTCTGTTAGTGAATCACAGCTCGACTTGCATGTGTTAAGCATATAGCTAGCGTTCCTTCTTCGAACCTTTTGGTATGTATTGCCCCCTAACTATAGATCAGATCCACCGGACGAGAAACTCAATTCCGCACTGCTGCGGAGTCGTCGGACTTATCCACCAAGGGATTCCTTGAATTTCTGTGGATTGCGTTGGAGGAAATCTACCAAAGCTAGGCAGATAGATGGACTCCTTCCCCGCTGCTAAGGGAGAGCAAGAAAAAAAATAAAATGATTGTTTTTTAATCAGCGCCCCCTTTCTTTTGGGTATGCAGGTACTAAGAGTCCTCTCACTACCAACCAGCAGACATCATCTGGCTGGGTCTTGCCGGTATCAACAACAAGAAAAAAAAACAAGCAAATGGAAACAGCAACTAACTATGGCTCTTGGCCCAGACAACGCCCTAGGCGTAGGGGAGATCGGAGCAACAGGGAACGCCTAGACGACGTTTTTCTTCCTGGGCAGCTGTAAGTAGATCGAGAGGTCGTTCCGCCCCTTGTCCCCGAATAAGGGTAATATGTTCTCATAAAAGGTTGCTCCAATCTGACCTAGCTGGCGAGCGATCCCAGTTCGCAGCAGAGAACAAGACAGGAAGCGAGCGTACCTTTGTTCGCTTCTTCTCCACCAAGCACGGAAGTTTAAGGATAACTGTAGGTCGGTGGCTACCTAAGGAAACTCCGATTCGATCCGCCCCCCGGCTGGGAGGCATCTACCTCATCCCGATCACAAGGAGA

mRNA sequence

ATGTTGGAAGATTGTAATAATATTCAAATAGGAAGAGGGGAGAAGGCTAAAAATACGAGCGTTGAACCAGCGGACGATACCATTCTTCTGGGCGAAGCCTCCTCCAACCAAAAAAGCCAGATGCTGAAAGCAAAGAAGATCCTAGCTAGAGAGCGGCCCCTTTCGAACCAGAGTGCCCTCACTGGGGGGTTTGCTTCTATTCGGTATTTGGTTAGTAAAGCTTTGCTTACCTTGAAGAGCCCTTCAGTGAGAAGCCCTTCTTTCTTGGGAAAGGTTTCCGATCAGCGAGCACCCCGCACACAGGATCGTAGGCAGCAGTGGCCGACCAGTAGGTCTTTTGGGCATTCGGATTCGGAAGTTATAGGTTGTTTGCCAGTGACTGGCTTATTGCTCTTATGCTCGCTTCGTCGCATTCGGAAGGAGAAAGGTTTGTTCTTTAATGTTTCAGTTTCTAATGAAACTCTTTTCCATCTTGGCTTTTTCCTTGTTTTTTCCATCTGCTTCTGCTCAAAACCATTTGGTTTGTCAAACCCATTAGATTCGGGCTGTTATCGCTCTTGGGAAGTAGATTTAGGTTCCTTGAGAACAACGACTAAAAGCTGTTTGCCTAACTTTGAAAAGAAAGAAAATAATAGAGACCCTCATGGAATGAAGAAGCTAAAGGGAAGGGTTCTTCGATCAAGACCTATCAACAGGATTCCCAACGCCATCACAGCTTTATCAAGAAAGGGGGTAAGCCTCCGTTATCAAATCGGCTGTTCTTTGATCAGCTGCTATGGGAAGTGGTATCCGGGAAATGTTGGGAGCAGCTACTTTCTTCTAGTAGTATGCCAGAAGAGAAGACCGATGAGCCTTACCAGAAGTGAAGTGAGCCGCCAGGCGAACTGGCGTGGCCGTAAGGCAAAGAGGACGATTACGGTACATATGGATCACCTCGTAGGGATCTCCCCCGGTTGGTACCGAGTAGAGTTATGGTTGGGCTGCGGGATACTTGGGGGGTCGGAGGATTTACCGGTCACGGGCAACCGTAGAACCAACGAGCATCCCGCAGGCGAGGAACCAAAGAAGCGAATAGAAAACGAAAGCGGAGTCTCCAGAGATCAATCAACCGGGCGCCTCCAAAGCTGTATCCAAGTTGTAATAAAAGAAAGAAGAAAGAATAAGAATCCAACTAGAGAACTGAAGCTTCCCAAGACCACTTACGGTAAGCCGGGAAGAGCCTTAGACTTCCGCCGGAGTTCCCGCAGGGACAGGCCAAACCAACCCAGGAACTTCACCAGCAAACTCCACACGTCGACCCAGGAGGTGAGGTCTCCCAACGCTGCCGATTGGATTGGATGCCCTGAGTCATTTGGTTTTGACGCGTGTCTATCAGATCCACCGGACGAGAAACTCAATTCCGCACTGCTGCGGAGTCGTCGGACTTATCCACCAAGGGATTCCTTGAATTTCTGTGGATTGCGTACTAAGAGTCCTCTCACTACCAACCAGCAGACATCATCTGGCTGGGTCTTGCCGGTATCAACAACAAGAAAAAAAAACAAGCAAATGGAAACAGCAACTAACTATGGCTCTTGGCCCAGACAACGCCCTAGGCGTAGGGGAGATCGGAGCAACAGGGAACGCCTAGACGACGTTTTTCTTCCTGGGCAGCTGTTGCTCCAATCTGACCTAGCTGGCGAGCGATCCCAGTTCGCAGCAGAGAACAAGACAGGAAGCGAGCGTACCTTTGTTCGCTTCTTCTCCACCAAGCACGGAAGTTTAAGGATAACTGTAGGTCGGTGGCTACCTAAGGAAACTCCGATTCGATCCGCCCCCCGGCTGGGAGGCATCTACCTCATCCCGATCACAAGGAGA

Coding sequence (CDS)

ATGTTGGAAGATTGTAATAATATTCAAATAGGAAGAGGGGAGAAGGCTAAAAATACGAGCGTTGAACCAGCGGACGATACCATTCTTCTGGGCGAAGCCTCCTCCAACCAAAAAAGCCAGATGCTGAAAGCAAAGAAGATCCTAGCTAGAGAGCGGCCCCTTTCGAACCAGAGTGCCCTCACTGGGGGGTTTGCTTCTATTCGGTATTTGGTTAGTAAAGCTTTGCTTACCTTGAAGAGCCCTTCAGTGAGAAGCCCTTCTTTCTTGGGAAAGGTTTCCGATCAGCGAGCACCCCGCACACAGGATCGTAGGCAGCAGTGGCCGACCAGTAGGTCTTTTGGGCATTCGGATTCGGAAGTTATAGGTTGTTTGCCAGTGACTGGCTTATTGCTCTTATGCTCGCTTCGTCGCATTCGGAAGGAGAAAGGTTTGTTCTTTAATGTTTCAGTTTCTAATGAAACTCTTTTCCATCTTGGCTTTTTCCTTGTTTTTTCCATCTGCTTCTGCTCAAAACCATTTGGTTTGTCAAACCCATTAGATTCGGGCTGTTATCGCTCTTGGGAAGTAGATTTAGGTTCCTTGAGAACAACGACTAAAAGCTGTTTGCCTAACTTTGAAAAGAAAGAAAATAATAGAGACCCTCATGGAATGAAGAAGCTAAAGGGAAGGGTTCTTCGATCAAGACCTATCAACAGGATTCCCAACGCCATCACAGCTTTATCAAGAAAGGGGGTAAGCCTCCGTTATCAAATCGGCTGTTCTTTGATCAGCTGCTATGGGAAGTGGTATCCGGGAAATGTTGGGAGCAGCTACTTTCTTCTAGTAGTATGCCAGAAGAGAAGACCGATGAGCCTTACCAGAAGTGAAGTGAGCCGCCAGGCGAACTGGCGTGGCCGTAAGGCAAAGAGGACGATTACGGTACATATGGATCACCTCGTAGGGATCTCCCCCGGTTGGTACCGAGTAGAGTTATGGTTGGGCTGCGGGATACTTGGGGGGTCGGAGGATTTACCGGTCACGGGCAACCGTAGAACCAACGAGCATCCCGCAGGCGAGGAACCAAAGAAGCGAATAGAAAACGAAAGCGGAGTCTCCAGAGATCAATCAACCGGGCGCCTCCAAAGCTGTATCCAAGTTGTAATAAAAGAAAGAAGAAAGAATAAGAATCCAACTAGAGAACTGAAGCTTCCCAAGACCACTTACGGTAAGCCGGGAAGAGCCTTAGACTTCCGCCGGAGTTCCCGCAGGGACAGGCCAAACCAACCCAGGAACTTCACCAGCAAACTCCACACGTCGACCCAGGAGGTGAGGTCTCCCAACGCTGCCGATTGGATTGGATGCCCTGAGTCATTTGGTTTTGACGCGTGTCTATCAGATCCACCGGACGAGAAACTCAATTCCGCACTGCTGCGGAGTCGTCGGACTTATCCACCAAGGGATTCCTTGAATTTCTGTGGATTGCGTACTAAGAGTCCTCTCACTACCAACCAGCAGACATCATCTGGCTGGGTCTTGCCGGTATCAACAACAAGAAAAAAAAACAAGCAAATGGAAACAGCAACTAACTATGGCTCTTGGCCCAGACAACGCCCTAGGCGTAGGGGAGATCGGAGCAACAGGGAACGCCTAGACGACGTTTTTCTTCCTGGGCAGCTGTTGCTCCAATCTGACCTAGCTGGCGAGCGATCCCAGTTCGCAGCAGAGAACAAGACAGGAAGCGAGCGTACCTTTGTTCGCTTCTTCTCCACCAAGCACGGAAGTTTAAGGATAACTGTAGGTCGGTGGCTACCTAAGGAAACTCCGATTCGATCCGCCCCCCGGCTGGGAGGCATCTACCTCATCCCGATCACAAGGAGA

Protein sequence

MLEDCNNIQIGRGEKAKNTSVEPADDTILLGEASSNQKSQMLKAKKILARERPLSNQSALTGGFASIRYLVSKALLTLKSPSVRSPSFLGKVSDQRAPRTQDRRQQWPTSRSFGHSDSEVIGCLPVTGLLLLCSLRRIRKEKGLFFNVSVSNETLFHLGFFLVFSICFCSKPFGLSNPLDSGCYRSWEVDLGSLRTTTKSCLPNFEKKENNRDPHGMKKLKGRVLRSRPINRIPNAITALSRKGVSLRYQIGCSLISCYGKWYPGNVGSSYFLLVVCQKRRPMSLTRSEVSRQANWRGRKAKRTITVHMDHLVGISPGWYRVELWLGCGILGGSEDLPVTGNRRTNEHPAGEEPKKRIENESGVSRDQSTGRLQSCIQVVIKERRKNKNPTRELKLPKTTYGKPGRALDFRRSSRRDRPNQPRNFTSKLHTSTQEVRSPNAADWIGCPESFGFDACLSDPPDEKLNSALLRSRRTYPPRDSLNFCGLRTKSPLTTNQQTSSGWVLPVSTTRKKNKQMETATNYGSWPRQRPRRRGDRSNRERLDDVFLPGQLLLQSDLAGERSQFAAENKTGSERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIYLIPITRR

Homology

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BLAST of Lsi03G000410 vs. ExPASy TrEMBL
Match: A0A5A7U3U3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold49288G00030 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.8e-56
Identity = 117/141 (82.98%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 479 RDSLNFCGLRTKSPLTTNQQTSSGWVLPVSTTRKKNKQMETATNYGSWPRQRPRRRGDRS 538
           RDS +FCGLRT+SPLTTNQ+TSSGWVLPVSTTRKK KQMETATNYGSWPRQ PR RGDRS
Sbjct: 45  RDSFHFCGLRTQSPLTTNQKTSSGWVLPVSTTRKKKKQMETATNYGSWPRQGPRLRGDRS 104

Query: 539 NRERLDDVFLPGQLLLQSDLAGERSQFAAENKTGSERTFVRFFSTKHGSLRITVGRWLPK 598
            RE LD+ FL          +GERSQFAAENKTGSE TFVRFFSTKHGS RITVGRWLPK
Sbjct: 105 KREGLDEFFLGS--------SGERSQFAAENKTGSEPTFVRFFSTKHGSFRITVGRWLPK 164

Query: 599 ETPIRSAPRLGGIYLIPITRR 620
           ETPIRSAPRLGGIYLIPITRR
Sbjct: 165 ETPIRSAPRLGGIYLIPITRR 177

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BLAST of Lsi03G000410 vs. ExPASy TrEMBL
Match: A0A6P4CAN7 (uncharacterized protein LOC107472572 OS=Arachis duranensis OX=130453 GN=LOC107472572 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 4.8e-48
Identity = 117/167 (70.06%), Postives = 122/167 (73.05%), Query Frame = 0


Query: 458 SDPPDEKLNSALLRSRRTYPPRDSLNFC----GLRTKSPLTTNQQTSSGWVLPVSTTRKK 517
           SDPPDEKLNSALL SRRTYPPRDS NF        T SPLTTNQQTSSGWVLP S   + 
Sbjct: 22  SDPPDEKLNSALLLSRRTYPPRDSWNFLLFFGYAGTTSPLTTNQQTSSGWVLPAS--GRS 81

Query: 518 NKQMETATNYGSWPR-QRPRRRGDRSNRERLDDVFLPGQLLLQSDLAGERSQFAAENKTG 577
            +Q      + SW    R R R     R R   V    + LLQSDLAGERSQFAAENKT 
Sbjct: 82  EQQGTPRRRFSSWAAVSRSRGRSVPCPRGR---VICSHKFLLQSDLAGERSQFAAENKTA 141

Query: 578 SERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIYLIPITRR 620
           SERTFVRFFSTKHGSLRITVGRWLPKETPIRSAP+LGGIYLIPITRR
Sbjct: 142 SERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPQLGGIYLIPITRR 183

[Close]

BLAST of Lsi03G000410 vs. ExPASy TrEMBL
Match: A0A1S3XDI4 (uncharacterized protein LOC107763905 OS=Nicotiana tabacum OX=4097 GN=LOC107763905 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.4e-47
Identity = 114/166 (68.67%), Postives = 123/166 (74.10%), Query Frame = 0


Query: 458 SDPPDEKLNSALLRSRRTYPPRDSLNFCG----LRTKSPLTTNQQTSSGWVLPVSTTRKK 517
           SDPPD+KLNSALL SRRTYPPRDS NF        TKSPLTTNQQTSSGWVLP     + 
Sbjct: 26  SDPPDKKLNSALLLSRRTYPPRDSWNFSPSFGYAGTKSPLTTNQQTSSGWVLP----GRS 85

Query: 518 NKQMETATNYGSWPRQRPRRRGDRSNRERLDDVFLPGQLLLQSDLAGERSQFAAENKTGS 577
            +Q      + SW     R RG  +   R+  +    ++LLQSDLAGERSQFA ENKT S
Sbjct: 86  EQQGTPRRRFSSWAAV-SRSRGRSAPCPRIWGI-CSHKILLQSDLAGERSQFATENKTAS 145

Query: 578 ERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIYLIPITRR 620
           ERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIYLIPITRR
Sbjct: 146 ERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIYLIPITRR 185

[Close]

BLAST of Lsi03G000410 vs. ExPASy TrEMBL
Match: A0A6P3YYU3 (uncharacterized protein LOC107406644 OS=Ziziphus jujuba OX=326968 GN=LOC107406644 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 9.0e-47
Identity = 117/167 (70.06%), Postives = 123/167 (73.65%), Query Frame = 0


Query: 458 SDPPDEKLNSALLRSRRTYPPRDSLNFCG----LRTKSPLTTNQQTSSGWVLPVSTTRKK 517
           SDPPDEKLNSALL SRRTYPPRDS NF        TKSPLTTNQQTSSGWVLP     + 
Sbjct: 110 SDPPDEKLNSALLLSRRTYPPRDSWNFSPPFGYADTKSPLTTNQQTSSGWVLP----GRS 169

Query: 518 NKQMETATNYGSWPRQRPRRRGDRSNRERLDDVFLPGQLLLQSDLAGERSQFAAENKTGS 577
            +Q      + SW     R RG  +   R+  V    + LLQSDLAGERSQFAAENKT S
Sbjct: 170 EQQGTPRRRFSSWAAV-SRSRGRSAPCPRI-WVICSQKRLLQSDLAGERSQFAAENKTAS 229

Query: 578 ERTFVRFFSTKHGSLRITVGRWLPKETPIRSA-PRLGGIYLIPITRR 620
           ERTFVRFFSTKHGSLRITVGRWLPKETPIRSA PRLGGIYLIPITRR
Sbjct: 230 ERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPPRLGGIYLIPITRR 270

[Close]

BLAST of Lsi03G000410 vs. ExPASy TrEMBL
Match: A0A6P8BX57 (LOW QUALITY PROTEIN: uncharacterized protein LOC116190061 OS=Punica granatum OX=22663 GN=LOC116190061 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.0e-46
Identity = 113/167 (67.66%), Postives = 121/167 (72.46%), Query Frame = 0


Query: 458 SDPPDEKLNSALLRSRRTYPPRDSLNFC----GLRTKSPLTTNQQTSSGWVLPVSTTRKK 517
           SDPP+EKL+SALL SRRTYPPRDS NF        T SPLTTNQQTSSGWVLP     + 
Sbjct: 31  SDPPEEKLHSALLLSRRTYPPRDSWNFSPPFGXAGTNSPLTTNQQTSSGWVLP----GRS 90

Query: 518 NKQMETATNYGSWPR-QRPRRRGDRSNRERLDDVFLPGQLLLQSDLAGERSQFAAENKTG 577
            ++      + SW    R R R     R     V    ++LLQSDLAGERSQFAAENKT 
Sbjct: 91  EQEGTPRRRFSSWAAVSRSRGRSAPCPRRW---VICSQKMLLQSDLAGERSQFAAENKTA 150

Query: 578 SERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIYLIPITRR 620
           SERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIYLIPITRR
Sbjct: 151 SERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIYLIPITRR 190

[Close]

BLAST of Lsi03G000410 vs. NCBI nr
Match: KAA0048119.1 (uncharacterized protein E6C27_scaffold49288G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 229.9 bits (585), Expect = 5.8e-56
Identity = 117/141 (82.98%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 479 RDSLNFCGLRTKSPLTTNQQTSSGWVLPVSTTRKKNKQMETATNYGSWPRQRPRRRGDRS 538
           RDS +FCGLRT+SPLTTNQ+TSSGWVLPVSTTRKK KQMETATNYGSWPRQ PR RGDRS
Sbjct: 45  RDSFHFCGLRTQSPLTTNQKTSSGWVLPVSTTRKKKKQMETATNYGSWPRQGPRLRGDRS 104

Query: 539 NRERLDDVFLPGQLLLQSDLAGERSQFAAENKTGSERTFVRFFSTKHGSLRITVGRWLPK 598
            RE LD+ FL          +GERSQFAAENKTGSE TFVRFFSTKHGS RITVGRWLPK
Sbjct: 105 KREGLDEFFLGS--------SGERSQFAAENKTGSEPTFVRFFSTKHGSFRITVGRWLPK 164

Query: 599 ETPIRSAPRLGGIYLIPITRR 620
           ETPIRSAPRLGGIYLIPITRR
Sbjct: 165 ETPIRSAPRLGGIYLIPITRR 177

[Close]

BLAST of Lsi03G000410 vs. NCBI nr
Match: KAG6621641.1 (hypothetical protein I3842_Q005700, partial [Carya illinoinensis] >KAG6621731.1 hypothetical protein I3842_Q014400, partial [Carya illinoinensis])

HSP 1 Score: 206.8 bits (525), Expect = 5.2e-49
Identity = 118/166 (71.08%), Postives = 126/166 (75.90%), Query Frame = 0


Query: 458 SDPPDEKLNSALLRSRRTYPPRDSLNFCG----LRTKSPLTTNQQTSSGWVLPVSTTRKK 517
           SDPPDEKLNSALL SRRTYPPRDS NF        TKSPLTTNQQTSSGWVLPV    + 
Sbjct: 47  SDPPDEKLNSALLLSRRTYPPRDSWNFSPPFGYAGTKSPLTTNQQTSSGWVLPV----RS 106

Query: 518 NKQMETATNYGSWPRQRPRRRGDRSNRERLDDVFLPGQLLLQSDLAGERSQFAAENKTGS 577
            +Q      + SW     R RG  +   R+  +F   ++LLQSDLAGERSQFAAENKT S
Sbjct: 107 EQQGTPRRRFYSWAAV-SRSRGRSAPCPRIWVIF-SQKILLQSDLAGERSQFAAENKTAS 166

Query: 578 ERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIYLIPITRR 620
           ERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIYLIPITRR
Sbjct: 167 ERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIYLIPITRR 206

[Close]

BLAST of Lsi03G000410 vs. NCBI nr
Match: XP_025015804.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC107262506 [Ricinus communis])

HSP 1 Score: 203.0 bits (515), Expect = 7.6e-48
Identity = 123/202 (60.89%), Postives = 134/202 (66.34%), Query Frame = 0


Query: 423 RNFTSKLHTSTQEVRSPNAADWIGCPESFGFDA-CLSDPPDEKLNSALLRSRRTYPPRDS 482
           +N T     + QE     +     CPE+   D    SDPPDEKLNSALL SRRTYPPRDS
Sbjct: 21  KNHTFSTSLAGQEFFDSRSPCLTPCPETGVQDGLSRSDPPDEKLNSALLLSRRTYPPRDS 80

Query: 483 LNFCG----LRTKSPLTTNQQTSSGWVLPVSTTRKKNKQMETATNYGSWPRQRPRRRGDR 542
            NF        TKSPLTTNQ TSSGWVLP  + ++   +      + SW      R  DR
Sbjct: 81  WNFSSPFGYADTKSPLTTNQXTSSGWVLPGGSEQEGTPR----RRFYSW--AAVSRSRDR 140

Query: 543 SNRERLDDVFLPGQLLLQSDLAGERSQFAAENKTGSERTFVRFFSTKHGSLRITVGRWLP 602
           S       V    ++LLQSDLAGERSQFAAENKT SERTFVRFFSTKHGSLRITVGRWLP
Sbjct: 141 SAPCPRRWVICSQKMLLQSDLAGERSQFAAENKTASERTFVRFFSTKHGSLRITVGRWLP 200

Query: 603 KETPIRSAPRLGGIYLIPITRR 620
           KETPIRSAPRLGGIYLIPITRR
Sbjct: 201 KETPIRSAPRLGGIYLIPITRR 216

[Close]

BLAST of Lsi03G000410 vs. NCBI nr
Match: XP_015947571.1 (uncharacterized protein LOC107472572 [Arachis duranensis] >XP_029152787.1 uncharacterized protein LOC114927344 [Arachis hypogaea])

HSP 1 Score: 202.6 bits (514), Expect = 9.9e-48
Identity = 117/167 (70.06%), Postives = 122/167 (73.05%), Query Frame = 0


Query: 458 SDPPDEKLNSALLRSRRTYPPRDSLNFC----GLRTKSPLTTNQQTSSGWVLPVSTTRKK 517
           SDPPDEKLNSALL SRRTYPPRDS NF        T SPLTTNQQTSSGWVLP S   + 
Sbjct: 22  SDPPDEKLNSALLLSRRTYPPRDSWNFLLFFGYAGTTSPLTTNQQTSSGWVLPAS--GRS 81

Query: 518 NKQMETATNYGSWPR-QRPRRRGDRSNRERLDDVFLPGQLLLQSDLAGERSQFAAENKTG 577
            +Q      + SW    R R R     R R   V    + LLQSDLAGERSQFAAENKT 
Sbjct: 82  EQQGTPRRRFSSWAAVSRSRGRSVPCPRGR---VICSHKFLLQSDLAGERSQFAAENKTA 141

Query: 578 SERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIYLIPITRR 620
           SERTFVRFFSTKHGSLRITVGRWLPKETPIRSAP+LGGIYLIPITRR
Sbjct: 142 SERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPQLGGIYLIPITRR 183

[Close]

BLAST of Lsi03G000410 vs. NCBI nr
Match: CAB3504466.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 201.8 bits (512), Expect = 1.7e-47
Identity = 112/140 (80.00%), Postives = 116/140 (82.86%), Query Frame = 0


Query: 481 SLNFCGLRTKSPLTTNQQT-SSGWVLPVSTTRKKNKQMETATNYGSWPRQRPRRRGDRSN 540
           +L F G  TKSPLTTNQQT SSGWVLPVSTTRKKN QMETATNYGSWPRQRPRRRGD++ 
Sbjct: 8   ALFFAG--TKSPLTTNQQTSSSGWVLPVSTTRKKN-QMETATNYGSWPRQRPRRRGDQNK 67

Query: 541 RERLDDVFLPGQLLLQSDLAGERSQFAAENKTGSERTFVRFFSTKHGSLRITVGRWLPKE 600
           + RLDD            LAGERSQ AAENKT SERTFVRFFSTKH SLR TVGRWLPKE
Sbjct: 68  KSRLDDD--------AQGLAGERSQSAAENKTASERTFVRFFSTKHRSLRRTVGRWLPKE 127

Query: 601 TPIRSAPRLGGIYLIPITRR 620
           TPIRSAPRLGGIYLIPITRR
Sbjct: 128 TPIRSAPRLGGIYLIPITRR 136

[Close]

BLAST of Lsi03G000410 vs. TAIR 10
Match: AT2G07599.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01040.1). )

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-49
Identity = 114/167 (68.26%), Postives = 120/167 (71.86%), Query Frame = 0


Query: 458 SDPPDEKLNSALLRSRRTYPPRDSLNFCG----LRTKSPLTTNQQTSSGWVLPVSTTRKK 517
           SDPPDEKLNSALL SRRTYPPRDS NF        TKSPLTTNQQTSSGWVLP     + 
Sbjct: 99  SDPPDEKLNSALLLSRRTYPPRDSWNFSPPFEYADTKSPLTTNQQTSSGWVLP----GRS 158

Query: 518 NKQMETATNYGSWPR-QRPRRRGDRSNRERLDDVFLPGQLLLQSDLAGERSQFAAENKTG 577
            ++      + SW    R R R     R     V    ++LLQSDLAGERSQFAAENKT 
Sbjct: 159 EQEGTPRRRFYSWAAVSRSRGRSAPCPRRW---VICSQKMLLQSDLAGERSQFAAENKTA 218

Query: 578 SERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIYLIPITRR 620
           SERTFVRFFSTKHGSLRITVGRWLPKET IRSAPR GGIYLIPITRR
Sbjct: 219 SERTFVRFFSTKHGSLRITVGRWLPKETAIRSAPRKGGIYLIPITRR 258

[Close]

BLAST of Lsi03G000410 vs. TAIR 10
Match: AT2G07599.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01040.1). )

HSP 1 Score: 193.7 bits (491), Expect = 4.3e-49
Identity = 113/167 (67.66%), Postives = 120/167 (71.86%), Query Frame = 0


Query: 458 SDPPDEKLNSALLRSRRTYPPRDSLNFCG----LRTKSPLTTNQQTSSGWVLPVSTTRKK 517
           S+PPDEKLNSALL SRRTYPPRDS NF        TKSPLTTNQQTSSGWVLP     + 
Sbjct: 184 SNPPDEKLNSALLLSRRTYPPRDSWNFSPPFEYADTKSPLTTNQQTSSGWVLP----GRS 243

Query: 518 NKQMETATNYGSWPR-QRPRRRGDRSNRERLDDVFLPGQLLLQSDLAGERSQFAAENKTG 577
            ++      + SW    R R R     R     V    ++LLQSDLAGERSQFAAENKT 
Sbjct: 244 EQEGTPRRRFYSWAAVSRSRGRSAPCPRRW---VICSQKMLLQSDLAGERSQFAAENKTA 303

Query: 578 SERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIYLIPITRR 620
           SERTFVRFFSTKHGSLRITVGRWLPKET IRSAPR GGIYLIPITRR
Sbjct: 304 SERTFVRFFSTKHGSLRITVGRWLPKETAIRSAPRKGGIYLIPITRR 343

The following BLAST results are available for this feature:

BLAST of Lsi03G000410 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G000410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3U3	2.8e-56	82.98	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6P4CAN7	4.8e-48	70.06	uncharacterized protein LOC107472572 OS=Arachis duranensis OX=130453 GN=LOC10747...	[more]
A0A1S3XDI4	2.4e-47	68.67	uncharacterized protein LOC107763905 OS=Nicotiana tabacum OX=4097 GN=LOC10776390...	[more]
A0A6P3YYU3	9.0e-47	70.06	uncharacterized protein LOC107406644 OS=Ziziphus jujuba OX=326968 GN=LOC10740664...	[more]
A0A6P8BX57	2.0e-46	67.66	LOW QUALITY PROTEIN: uncharacterized protein LOC116190061 OS=Punica granatum OX=...	[more]

BLAST of Lsi03G000410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048119.1	5.8e-56	82.98	uncharacterized protein E6C27_scaffold49288G00030 [Cucumis melo var. makuwa]	[more]
KAG6621641.1	5.2e-49	71.08	hypothetical protein I3842_Q005700, partial [Carya illinoinensis] >KAG6621731.1 ...	[more]
XP_025015804.1	7.6e-48	60.89	LOW QUALITY PROTEIN: uncharacterized protein LOC107262506 [Ricinus communis]	[more]
XP_015947571.1	9.9e-48	70.06	uncharacterized protein LOC107472572 [Arachis duranensis] >XP_029152787.1 unchar...	[more]
CAB3504466.1	1.7e-47	80.00	unnamed protein product [Digitaria exilis]	[more]

BLAST of Lsi03G000410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07599.1	1.1e-49	68.26	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G07599.2	4.3e-49	67.66	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 408..423
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 384..437
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 337..371
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 346..363
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 510..526
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 510..541

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G000410.1	Lsi03G000410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane