Lsi03G000240 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G000240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr03: 446936 .. 447166 (-)
RNA-Seq Expression	Lsi03G000240
Synteny	Lsi03G000240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGACTAACACTTGGTGCAATCCTCATGTTGGTGCTGATCAGCTCGGCCGTACTAATCGAAGGGACAACTCAACGTCTGATCGATAGACACGAGCAGACACTAAGGGGGAATGAGAATGAAAAGGCGAAAAATAGGCGCCCTAATGACAATGGTGAATATAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGTTGGAGTACCGCAAAACAAACTAGGGACTAA

mRNA sequence

ATGAGAAGACTAACACTTGGTGCAATCCTCATGTTGGTGCTGATCAGCTCGGCCGTACTAATCGAAGGGACAACTCAACGTCTGATCGATAGACACGAGCAGACACTAAGGGGGAATGAGAATGAAAAGGCGAAAAATAGGCGCCCTAATGACAATGGTGAATATAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGTTGGAGTACCGCAAAACAAACTAGGGACTAA

Coding sequence (CDS)

ATGAGAAGACTAACACTTGGTGCAATCCTCATGTTGGTGCTGATCAGCTCGGCCGTACTAATCGAAGGGACAACTCAACGTCTGATCGATAGACACGAGCAGACACTAAGGGGGAATGAGAATGAAAAGGCGAAAAATAGGCGCCCTAATGACAATGGTGAATATAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGTTGGAGTACCGCAAAACAAACTAGGGACTAA

Protein sequence

MRRLTLGAILMLVLISSAVLIEGTTQRLIDRHEQTLRGNENEKAKNRRPNDNGEYNHHGCPRRDVDCWSTAKQTRD

Homology

[Close]

BLAST of Lsi03G000240 vs. ExPASy TrEMBL
Match: A0A0A0LV16 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G119910 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.8e-19
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1  MRRLTLGAILMLVLISSAVLIEGTT----QRLIDRHEQTLRG-NENEKAKNRRPNDNGEY 60
          MRRLTL AILMLVLI+S +LIEGTT    +RLID ++Q  R  NENEKAK RRPND+GEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCPRRDVDCWSTAKQTRD 77
          NHHGC RRDVDCWS AKQ+ D
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

[Close]

BLAST of Lsi03G000240 vs. NCBI nr
Match: KGN64824.1 (hypothetical protein Csa_022834 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 5.9e-19
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1  MRRLTLGAILMLVLISSAVLIEGTT----QRLIDRHEQTLRG-NENEKAKNRRPNDNGEY 60
          MRRLTL AILMLVLI+S +LIEGTT    +RLID ++Q  R  NENEKAK RRPND+GEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCPRRDVDCWSTAKQTRD 77
          NHHGC RRDVDCWS AKQ+ D
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

The following BLAST results are available for this feature:

BLAST of Lsi03G000240 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G000240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV16	2.8e-19	72.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G119910 PE=4 SV=1	[more]

BLAST of Lsi03G000240 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64824.1	5.9e-19	72.84	hypothetical protein Csa_022834 [Cucumis sativus]	[more]

BLAST of Lsi03G000240 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G000240.1	Lsi03G000240.1	mRNA