Lsi02G030010 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G030010
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr02: 36098732 .. 36099144 (-)
RNA-Seq ExpressionLsi02G030010
SyntenyLsi02G030010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTTTTCTCTCTCCCAACACAAAAGTTTCCATCTTTATGAAGATTACTCATTACCAAACCCAAAGTTAATTCATTTTCAACTTCAAAGGTCTTCATTGGTAGTATTTGATGAAAAGAAGGAAACTCCATATGAGAAATTGGAAATTGTGGTTCAAGGTTGACGATTGGATTTTCCGTTGAAGACGACTCCGACGACTGCTTATCGACGGAGGAAGCCGGAGAGCCAAGAGAATTATATCAAAGGAGAGCAAGAAAATGATGGGGAAAAGATCAGAAAGTGCAAAGTATGAAGCAGAGGCATTAGGATTGAAAGAAAATGAGTTTTGAAAGATTATAGATGGTTTTTTTTTTCTTTTTCTATTTTTTGAAGAAGATGACAGATGAAGAATTGAACAGAAGAGTGGAGTAG

mRNA sequence

ATGGTTTTCCATCTTTATGAAGATTACTCATTACCAAACCCAAAGTTAATTCATTTTCAACTTCAAAGGTCTTCATTGGTAGTATTTGATGAAAAGAAGGAAACTCCATATGAGAAATTGGAAATTGTGACGACTCCGACGACTGCTTATCGACGGAGGAAGCCGGAGAGCCAAGAGAATTATATCAAAGGAGAGCAAGAAAATGATGGGGAAAAGATCAGAAAGTGCAAAAAGATGACAGATGAAGAATTGAACAGAAGAGTGGAGTAG

Coding sequence (CDS)

ATGGTTTTCCATCTTTATGAAGATTACTCATTACCAAACCCAAAGTTAATTCATTTTCAACTTCAAAGGTCTTCATTGGTAGTATTTGATGAAAAGAAGGAAACTCCATATGAGAAATTGGAAATTGTGACGACTCCGACGACTGCTTATCGACGGAGGAAGCCGGAGAGCCAAGAGAATTATATCAAAGGAGAGCAAGAAAATGATGGGGAAAAGATCAGAAAGTGCAAAAAGATGACAGATGAAGAATTGAACAGAAGAGTGGAGTAG

Protein sequence

MVFHLYEDYSLPNPKLIHFQLQRSSLVVFDEKKETPYEKLEIVTTPTTAYRRRKPESQENYIKGEQENDGEKIRKCKKMTDEELNRRVE
Homology
BLAST of Lsi02G030010 vs. ExPASy TrEMBL
Match: A0A0A0M033 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G435810 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.7e-13
Identity = 58/118 (49.15%), Postives = 67/118 (56.78%), Query Frame = 0

Query: 3   FHLYED--YSLPNPKLIHFQLQRSSLVVFDEKKETPYEKLEIV-------------TTPT 62
           FHLYED  YS PNPKL HFQLQ SSLVVFDEK+ETP EKLE V             TTP 
Sbjct: 70  FHLYEDYYYSPPNPKLTHFQLQTSSLVVFDEKRETPDEKLETVVQSQRLDSPSKNTTTPV 129

Query: 63  TAYRRRKPESQENYIKGE-------------QENDGEKI---RKCKKMTDEELNRRVE 90
             Y RRK E  +  +  E              +N+G+++    +  KMTDEELNRRVE
Sbjct: 130 RTYLRRKSEKPKRIVSMEISKKMMGKRRSESVKNEGKELEDENEFAKMTDEELNRRVE 187

BLAST of Lsi02G030010 vs. ExPASy TrEMBL
Match: A0A6J1EH73 (uncharacterized protein LOC111434084 OS=Cucurbita moschata OX=3662 GN=LOC111434084 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 9.1e-09
Identity = 47/111 (42.34%), Postives = 56/111 (50.45%), Query Frame = 0

Query: 4   HLYEDYSLPNPKLIHFQLQRSSLVVFDEKKETPYEKLE------------IVTTPTTAYR 63
           HLYE YS PNPK+ HFQ Q SS VVFDEK+E P   L+            + TTP   YR
Sbjct: 93  HLYEHYSPPNPKMTHFQHQTSSFVVFDEKREYPDGNLQNFVPERCDSLPPLKTTPVRTYR 152

Query: 64  RRKPESQENYI-------------KGEQENDGEKIRKCKKMTDEELNRRVE 90
           R K E  +  +              G+ E    +  +  KMTDEELNRRVE
Sbjct: 153 RSKSEKPKRSVSKESKKKMAKRSESGKYEEKELEENEYSKMTDEELNRRVE 203

BLAST of Lsi02G030010 vs. ExPASy TrEMBL
Match: A0A6J1KGM0 (uncharacterized protein LOC111495593 OS=Cucurbita maxima OX=3661 GN=LOC111495593 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-07
Identity = 44/111 (39.64%), Postives = 58/111 (52.25%), Query Frame = 0

Query: 4   HLYEDYSLPNPKLIHFQLQRSSLVVFDEKKETPYEKLE------------IVTTPTTAYR 63
           H YE YS PNPK+ HFQ Q SS VVF+EK+E P   L+            + TTP   Y+
Sbjct: 93  HFYEHYSPPNPKITHFQHQTSSFVVFEEKREYPDGNLQNIVQDRCDSLPPLKTTPVRTYQ 152

Query: 64  RRKPESQENYIKGEQEN-----------DGEKI--RKCKKMTDEELNRRVE 90
           R K E  +  +  E +            +G+++   +  KMTDEELNRRVE
Sbjct: 153 RSKSEKPKRTVSKESKKKMAKRSESGKYEGKELEENEYSKMTDEELNRRVE 203

BLAST of Lsi02G030010 vs. NCBI nr
Match: KAE8653186.1 (hypothetical protein Csa_020019 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 9.6e-13
Identity = 58/118 (49.15%), Postives = 67/118 (56.78%), Query Frame = 0

Query: 3   FHLYED--YSLPNPKLIHFQLQRSSLVVFDEKKETPYEKLEIV-------------TTPT 62
           FHLYED  YS PNPKL HFQLQ SSLVVFDEK+ETP EKLE V             TTP 
Sbjct: 102 FHLYEDYYYSPPNPKLTHFQLQTSSLVVFDEKRETPDEKLETVVQSQRLDSPSKNTTTPV 161

Query: 63  TAYRRRKPESQENYIKGE-------------QENDGEKI---RKCKKMTDEELNRRVE 90
             Y RRK E  +  +  E              +N+G+++    +  KMTDEELNRRVE
Sbjct: 162 RTYLRRKSEKPKRIVSMEISKKMMGKRRSESVKNEGKELEDENEFAKMTDEELNRRVE 219

BLAST of Lsi02G030010 vs. NCBI nr
Match: XP_038877172.1 (uncharacterized protein LOC120069472 [Benincasa hispida])

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 52/111 (46.85%), Postives = 61/111 (54.95%), Query Frame = 0

Query: 3   FHLYEDYSLPNPKLIHFQLQRSSLVVFDEKKETPYEKLEIVT-----------TPTTAYR 62
           FHLYED+S  NPKL HF+L  SSLVVFDEKKET  EKLE+V            TP    R
Sbjct: 100 FHLYEDFSPSNPKLNHFRLPSSSLVVFDEKKETTREKLELVVQGRQLDSPWKMTPARTCR 159

Query: 63  RRKPESQENYIKGEQE----NDGEKIR---------KCKKMTDEELNRRVE 90
           RRK E  +  +  E         E ++         + +KMTDEELNRRVE
Sbjct: 160 RRKSEKPKGIVSKESNKMMGKRSESVKYEAKELEENEFEKMTDEELNRRVE 210

BLAST of Lsi02G030010 vs. NCBI nr
Match: KAG6583897.1 (hypothetical protein SDJN03_19829, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-08
Identity = 47/111 (42.34%), Postives = 56/111 (50.45%), Query Frame = 0

Query: 4   HLYEDYSLPNPKLIHFQLQRSSLVVFDEKKETPYEKLE------------IVTTPTTAYR 63
           HLYE YS PNPK+ HFQ Q SS VVFDEK+E P   L+            + TTP   YR
Sbjct: 30  HLYEHYSPPNPKMTHFQHQTSSFVVFDEKREYPDGNLQNFVRERCDSLPPLKTTPVRTYR 89

Query: 64  RRKPESQENYI-------------KGEQENDGEKIRKCKKMTDEELNRRVE 90
           R K E  +  +              G+ E    +  +  KMTDEELNRRVE
Sbjct: 90  RSKSEKPKRSVSKESKKKMAKRSESGKYEEKELEENEYSKMTDEELNRRVE 140

BLAST of Lsi02G030010 vs. NCBI nr
Match: XP_022927149.1 (uncharacterized protein LOC111434084 [Cucurbita moschata])

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-08
Identity = 47/111 (42.34%), Postives = 56/111 (50.45%), Query Frame = 0

Query: 4   HLYEDYSLPNPKLIHFQLQRSSLVVFDEKKETPYEKLE------------IVTTPTTAYR 63
           HLYE YS PNPK+ HFQ Q SS VVFDEK+E P   L+            + TTP   YR
Sbjct: 93  HLYEHYSPPNPKMTHFQHQTSSFVVFDEKREYPDGNLQNFVPERCDSLPPLKTTPVRTYR 152

Query: 64  RRKPESQENYI-------------KGEQENDGEKIRKCKKMTDEELNRRVE 90
           R K E  +  +              G+ E    +  +  KMTDEELNRRVE
Sbjct: 153 RSKSEKPKRSVSKESKKKMAKRSESGKYEEKELEENEYSKMTDEELNRRVE 203

BLAST of Lsi02G030010 vs. NCBI nr
Match: XP_023520225.1 (uncharacterized protein LOC111783530 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 46/111 (41.44%), Postives = 53/111 (47.75%), Query Frame = 0

Query: 4   HLYEDYSLPNPKLIHFQLQRSSLVVFDEKKETPYEKLE------------IVTTPTTAYR 63
           HLYE YS PNPK+ HFQ Q SS VVFDEK+E P   L             + TTP   Y 
Sbjct: 60  HLYEHYSPPNPKMTHFQRQTSSFVVFDEKREYPDGNLRNFVQERCDSMPLLKTTPVRTYE 119

Query: 64  RRKPESQENYIKGEQENDGEK-------------IRKCKKMTDEELNRRVE 90
           R K E  +  +  E +    K               +  KMTDEELNRRVE
Sbjct: 120 RSKSEKPKRSVSKESKKKMAKRLESGMYEEKELEENEYSKMTDEELNRRVE 170

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0M0334.7e-1349.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G435810 PE=4 SV=1[more]
A0A6J1EH739.1e-0942.34uncharacterized protein LOC111434084 OS=Cucurbita moschata OX=3662 GN=LOC1114340... [more]
A0A6J1KGM01.3e-0739.64uncharacterized protein LOC111495593 OS=Cucurbita maxima OX=3661 GN=LOC111495593... [more]
Match NameE-valueIdentityDescription
KAE8653186.19.6e-1349.15hypothetical protein Csa_020019 [Cucumis sativus][more]
XP_038877172.12.0e-1046.85uncharacterized protein LOC120069472 [Benincasa hispida][more]
KAG6583897.11.9e-0842.34hypothetical protein SDJN03_19829, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022927149.11.9e-0842.34uncharacterized protein LOC111434084 [Cucurbita moschata][more]
XP_023520225.11.6e-0741.44uncharacterized protein LOC111783530 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G030010.1Lsi02G030010.1mRNA