Lsi02G030000 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G030000
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr02: 36091187 .. 36093003 (+)
RNA-Seq ExpressionLsi02G030000
SyntenyLsi02G030000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAGCCTAATAATGTTTGTTGCTCCATTGAATTGGAGCCCAAAACCTTGAACCAAGGCCAACTCCACCAGGCTAGGGTCAGCCAATAACCCGTTACAATGCAACCCACTATTATTTTCTATTTTTATTTTTAAATATATAATATAATTTATTTGTTTATGGTTTTTTGTGTTTTGGTTGGGCAGGAAGTGGCTGCTGATGTTGTTCAGAAACTGGAACCCAGCGAAGCCTCTCTTGTATTGATTGATGTATGTGTTTCATTTACTAACGATATCTAATGTCATGATAGGATTTTTCTTAATTATGACATATTTGGAAGGGAAACTTTTGTAATATTAATATTCCAAAGTATTATAGGTATGTTTTTAGTCAGTCAAAATCAATTTAAATACTTGATTTTTCTACATTTAAACATAGTTTTCTTATTATAAAAATTGATATTGGATAATTGAAAGCATATGTTTTTAGAGTGATTTGAACCTGACAAAAGTGAATTTAATAATTTAAAAATTACTCCTAAATATACCATCAGTTCATCACTTGTGAAGTTTTTTTTGTTTTTTTTGTTTTTTTTTTAATCAAGAATCATTTAAGAATATAGTTATGATTCGGGGGGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAGTCCATAAACTTTTAATTTTGTGTATAATAAAGTCATAACATATATATTTTTTAATATTAATTGGTCTATTTAATATAAATTAAATTTAAAATTTATGTAGAATGAAATTTTAAACTTTCAATTTTGTGTATAGTAAGTCCATAAACTTTTAATTTTGTGTATAATAAAGTCATAACATATATATTTTTTAATATTAATTGGTCTATTTAATATAAATTAAATTTAAAATTTATGTAGAATGAAATTTTAAACTTTCAATTTTGTGTATAGTAAATCCGTAAATTTTAAAAAAGATCAAGAGTCTAATTACACAAAAATTAAAATTGAAAAGTTAGAGACCTAGAATAAAACATAAAGTTTCAAAACTTAATAGTCTTTTTAAAAAAGTTAGGAATTTATTAGACACAACTTCAAAGTTTATGAACCAAAATTGTAATTGAACCAACTATTAAAATAATTTATTATTTAATATTTCTTTATTATTTGATAATAAGTGGGGTGGAATTTAAAAGATGTATTATTAATATAAATATTCGTGTTAATTCTTACAAGTACTTTATGTAACTTTCTCTGTTATATTTTTCCATTCTAATTGATATGAGAGTTTAGATCGTGGAAAGATTCAAACCGATGAACTATATGCATGAAAGAGGAGGAGAACCACAATCGTCACTGCCACCCCCACCGCCACCGCCGTCATTGGGAGATATTAAGGAAGAAAGAGGAAGATGTCAGTGCTCTTACATTTCTACTGAATCCCCAAATCAACTGCAGTTGGTCAAGGAACCCCTTTCAGCTCCATTTTGA

mRNA sequence

ATGGCTAAGCCTAATAATGTTTGTTGCTCCATTGAATTGGAGCCCAAAACCTTGAACCAAGGCCAACTCCACCAGGCTAGGGAAGTGGCTGCTGATGTTGTTCAGAAACTGGAACCCAGCGAAGCCTCTCTTGTATTGATTGATATCGTGGAAAGATTCAAACCGATGAACTATATGCATGAAAGAGGAGGAGAACCACAATCGTCACTGCCACCCCCACCGCCACCGCCGTCATTGGGAGATATTAAGGAAGAAAGAGGAAGATGTCAGTGCTCTTACATTTCTACTGAATCCCCAAATCAACTGCAGTTGGTCAAGGAACCCCTTTCAGCTCCATTTTGA

Coding sequence (CDS)

ATGGCTAAGCCTAATAATGTTTGTTGCTCCATTGAATTGGAGCCCAAAACCTTGAACCAAGGCCAACTCCACCAGGCTAGGGAAGTGGCTGCTGATGTTGTTCAGAAACTGGAACCCAGCGAAGCCTCTCTTGTATTGATTGATATCGTGGAAAGATTCAAACCGATGAACTATATGCATGAAAGAGGAGGAGAACCACAATCGTCACTGCCACCCCCACCGCCACCGCCGTCATTGGGAGATATTAAGGAAGAAAGAGGAAGATGTCAGTGCTCTTACATTTCTACTGAATCCCCAAATCAACTGCAGTTGGTCAAGGAACCCCTTTCAGCTCCATTTTGA

Protein sequence

MAKPNNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKPMNYMHERGGEPQSSLPPPPPPPSLGDIKEERGRCQCSYISTESPNQLQLVKEPLSAPF
Homology
BLAST of Lsi02G030000 vs. ExPASy TrEMBL
Match: A0A6J1JTK7 (uncharacterized protein LOC111488747 OS=Cucurbita maxima OX=3661 GN=LOC111488747 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.7e-40
Identity = 92/123 (74.80%), Postives = 100/123 (81.30%), Query Frame = 0

Query: 1   MAKPNNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKPMNYMH 60
           MAKP N  CSIE+EP+TLNQGQLHQAREVAADVVQKLEP+EASL+LIDIVER KPMN++ 
Sbjct: 1   MAKP-NARCSIEMEPRTLNQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHII 60

Query: 61  ERGGE----PQSSLP------PPPPPPSLGDIKEERGRCQCSYISTESPNQLQLVKEPLS 114
           E GGE    P  S P      PPPPPP +GD KEERGRCQCSYI  ESPNQLQL+KEPLS
Sbjct: 61  EGGGELPLLPPLSSPLSSATGPPPPPPLVGDYKEERGRCQCSYICIESPNQLQLLKEPLS 120

BLAST of Lsi02G030000 vs. ExPASy TrEMBL
Match: A0A6J1GPS6 (uncharacterized protein LOC111456424 OS=Cucurbita moschata OX=3662 GN=LOC111456424 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.9e-37
Identity = 86/122 (70.49%), Postives = 95/122 (77.87%), Query Frame = 0

Query: 1   MAKPNNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKPMNYMH 60
           MAKP N  CSIE+EP+TL QGQLHQAREVAADVVQKLEP+EASL+LIDIVER KPMN++ 
Sbjct: 1   MAKP-NARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHII 60

Query: 61  ERGGEP---------QSSLPPPPPPPSLGDIKEERGRCQCSYISTESPNQLQLVKEPLSA 114
           ERG  P          S+   PPPPP +GD  EE GRCQCSYI  ESPNQLQL+KEPLSA
Sbjct: 61  ERGELPLLPPLSSPLSSAAAGPPPPPFVGDYNEESGRCQCSYICIESPNQLQLLKEPLSA 120

BLAST of Lsi02G030000 vs. ExPASy TrEMBL
Match: A0A1S3CH00 (uncharacterized protein LOC103500790 OS=Cucumis melo OX=3656 GN=LOC103500790 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.4e-35
Identity = 89/119 (74.79%), Postives = 97/119 (81.51%), Query Frame = 0

Query: 1   MAKPNNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKPMNYMH 60
           MAKP NVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLID+VER KPM YM 
Sbjct: 1   MAKP-NVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDMVERLKPMKYMF 60

Query: 61  ER----GGEPQSSLPPPPPPPSLGDIKEERGRCQCSYIST-ESPNQ-LQLVKEPLSAPF 114
           ER    GGE +S         SLG+ +EER RCQCSY+ST +SPN+ LQL+KEPLSAPF
Sbjct: 61  ERGGVGGGESESE------SESLGEFEEERKRCQCSYVSTDQSPNKVLQLLKEPLSAPF 112

BLAST of Lsi02G030000 vs. ExPASy TrEMBL
Match: A0A0A0K9S8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452980 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.0e-29
Identity = 78/115 (67.83%), Postives = 89/115 (77.39%), Query Frame = 0

Query: 1   MAKPNNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKPMNYMH 60
           MAKP NVCCSIELEPKTLNQGQLH+AREVAADVVQKLE SEA+LVLID+VER +PM  M 
Sbjct: 1   MAKP-NVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMF 60

Query: 61  ERGGEPQSSLPPPPPPPSLGDIKEERGRCQCSYIST-ESPNQ-LQLVKEPLSAPF 114
             GG             SL + +EER RCQCSY+ST +SPN+ L+L+KEPLSAPF
Sbjct: 61  GGGGGGGG---------SLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF 105

BLAST of Lsi02G030000 vs. ExPASy TrEMBL
Match: A0A6J1DD75 (uncharacterized protein LOC111019960 OS=Momordica charantia OX=3673 GN=LOC111019960 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.2e-27
Identity = 72/113 (63.72%), Postives = 80/113 (70.80%), Query Frame = 0

Query: 1   MAKPNNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKPMNYMH 60
           MAK   +CCSIELEPKTLN GQL++AREVAADVVQKLEP EAS V ID+VERFK +N   
Sbjct: 1   MAKA-KICCSIELEPKTLNHGQLYRAREVAADVVQKLEPEEASAVXIDVVERFKTVNQTI 60

Query: 61  ERGGEPQSSLPPPPPPPSLGDIKEERGRCQCSYISTESPNQLQLVKEPLSAPF 114
           E G           P   L D  E R RCQCS + TESPNQ+QL+KEPLSAPF
Sbjct: 61  ESG----------EPSRPLQDYVEGRERCQCSCLPTESPNQMQLLKEPLSAPF 102

BLAST of Lsi02G030000 vs. NCBI nr
Match: XP_038898732.1 (uncharacterized protein LOC120086256 [Benincasa hispida])

HSP 1 Score: 197.6 bits (501), Expect = 5.8e-47
Identity = 101/113 (89.38%), Postives = 103/113 (91.15%), Query Frame = 0

Query: 1   MAKPNNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKPMNYMH 60
           MAKP NVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFK MNYM 
Sbjct: 1   MAKP-NVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKTMNYML 60

Query: 61  ERGGEPQSSLPPPPPPPSLGDIKEERGRCQCSYISTESPNQLQLVKEPLSAPF 114
           E  G+ Q SLPPPP  PSLGDIKEERGRCQC Y+STESPNQLQLVKEPLSAPF
Sbjct: 61  EGEGDSQPSLPPPPSLPSLGDIKEERGRCQCFYVSTESPNQLQLVKEPLSAPF 112

BLAST of Lsi02G030000 vs. NCBI nr
Match: XP_022992446.1 (uncharacterized protein LOC111488747 [Cucurbita maxima])

HSP 1 Score: 173.3 bits (438), Expect = 1.2e-39
Identity = 92/123 (74.80%), Postives = 100/123 (81.30%), Query Frame = 0

Query: 1   MAKPNNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKPMNYMH 60
           MAKP N  CSIE+EP+TLNQGQLHQAREVAADVVQKLEP+EASL+LIDIVER KPMN++ 
Sbjct: 1   MAKP-NARCSIEMEPRTLNQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHII 60

Query: 61  ERGGE----PQSSLP------PPPPPPSLGDIKEERGRCQCSYISTESPNQLQLVKEPLS 114
           E GGE    P  S P      PPPPPP +GD KEERGRCQCSYI  ESPNQLQL+KEPLS
Sbjct: 61  EGGGELPLLPPLSSPLSSATGPPPPPPLVGDYKEERGRCQCSYICIESPNQLQLLKEPLS 120

BLAST of Lsi02G030000 vs. NCBI nr
Match: XP_023521779.1 (uncharacterized protein LOC111785636 [Cucurbita pepo subsp. pepo] >XP_023549181.1 uncharacterized protein LOC111807614 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.9 bits (437), Expect = 1.5e-39
Identity = 91/121 (75.21%), Postives = 98/121 (80.99%), Query Frame = 0

Query: 1   MAKPNNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKPMNYMH 60
           MAKP N  CSIE+EP+TLNQGQLHQAREVAADVVQKLEP+EASL+LIDIVER KPMN+M 
Sbjct: 1   MAKP-NARCSIEMEPRTLNQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHMI 60

Query: 61  ERG--------GEPQSSLPPPPPPPSLGDIKEERGRCQCSYISTESPNQLQLVKEPLSAP 114
           ERG          P SS   PP PP +GD KEERGRCQCSYIS ESPNQLQL+KEPLSAP
Sbjct: 61  ERGELPLLPPLSSPLSSAAGPPAPPFVGDYKEERGRCQCSYISIESPNQLQLLKEPLSAP 120

BLAST of Lsi02G030000 vs. NCBI nr
Match: KAG6575517.1 (hypothetical protein SDJN03_26156, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014056.1 hypothetical protein SDJN02_24228 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165.2 bits (417), Expect = 3.2e-37
Identity = 89/125 (71.20%), Postives = 97/125 (77.60%), Query Frame = 0

Query: 1   MAKPNNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKPMNYMH 60
           MAKP N  CSIE+EP+TL QGQLHQAREVAADVVQKLEP+EASL+LIDIVER KPMN++ 
Sbjct: 1   MAKP-NARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHII 60

Query: 61  ERGGEPQSSLPP------------PPPPPSLGDIKEERGRCQCSYISTESPNQLQLVKEP 114
           ERG  P   LPP            PPPPP +GD  EERGRCQCSYI  ESPNQLQL+KEP
Sbjct: 61  ERGELP--LLPPLSSPLSSAAAAGPPPPPFVGDYNEERGRCQCSYICIESPNQLQLLKEP 120

BLAST of Lsi02G030000 vs. NCBI nr
Match: XP_022954046.1 (uncharacterized protein LOC111456424 [Cucurbita moschata])

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-36
Identity = 86/122 (70.49%), Postives = 95/122 (77.87%), Query Frame = 0

Query: 1   MAKPNNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKPMNYMH 60
           MAKP N  CSIE+EP+TL QGQLHQAREVAADVVQKLEP+EASL+LIDIVER KPMN++ 
Sbjct: 1   MAKP-NARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHII 60

Query: 61  ERGGEP---------QSSLPPPPPPPSLGDIKEERGRCQCSYISTESPNQLQLVKEPLSA 114
           ERG  P          S+   PPPPP +GD  EE GRCQCSYI  ESPNQLQL+KEPLSA
Sbjct: 61  ERGELPLLPPLSSPLSSAAAGPPPPPFVGDYNEESGRCQCSYICIESPNQLQLLKEPLSA 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1JTK75.7e-4074.80uncharacterized protein LOC111488747 OS=Cucurbita maxima OX=3661 GN=LOC111488747... [more]
A0A6J1GPS65.9e-3770.49uncharacterized protein LOC111456424 OS=Cucurbita moschata OX=3662 GN=LOC1114564... [more]
A0A1S3CH001.4e-3574.79uncharacterized protein LOC103500790 OS=Cucumis melo OX=3656 GN=LOC103500790 PE=... [more]
A0A0A0K9S82.0e-2967.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452980 PE=4 SV=1[more]
A0A6J1DD753.2e-2763.72uncharacterized protein LOC111019960 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
Match NameE-valueIdentityDescription
XP_038898732.15.8e-4789.38uncharacterized protein LOC120086256 [Benincasa hispida][more]
XP_022992446.11.2e-3974.80uncharacterized protein LOC111488747 [Cucurbita maxima][more]
XP_023521779.11.5e-3975.21uncharacterized protein LOC111785636 [Cucurbita pepo subsp. pepo] >XP_023549181.... [more]
KAG6575517.13.2e-3771.20hypothetical protein SDJN03_26156, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022954046.11.2e-3670.49uncharacterized protein LOC111456424 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..84
NoneNo IPR availablePANTHERPTHR34808:SF5SUBFAMILY NOT NAMEDcoord: 6..113
NoneNo IPR availablePANTHERPTHR34808EXPRESSED PROTEINcoord: 6..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G030000.1Lsi02G030000.1mRNA