Lsi02G029710 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G029710
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: cryptdin protein-related .
Location	chr02: 35801966 .. 35803181 (+)
RNA-Seq Expression	Lsi02G029710
Synteny	Lsi02G029710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTATAAATACCAATACATACAGCTTCAAATCTTCACCAATCCAAAATTAAGCTACATACCAATACCCCCATCACTATTATTTCTCCTAAAAAATTCTAGCAATGGCCACACATAAATTCTCTCTAAGCTCTGTTTTCATGACGGTTCTCGTCTTCGCCATGGTTCTCTCTCCCATGACGATTCCAACCGCCGAAGCTACTCGTGTGCTTTTGCAGCAAAGTAAGAATTTCATTTGATAACCATTTTTGTTTTTTGTTTTTGGTTTTTATATCTGCCATTCACCGTTTCTTTGTATTATTATTTATTTTTTACGAGTATTAAAAACAAAAATTTAGAATTTTTTTTATTTTTAATTTGATTAAAAATACAAATATTTACTTAAAAAAATATAAAACTTACAGTTAAAAAATTATGAGAATATATATATATATATATAAAACAAGAATTTTTTAACCTATTTAGTATAATAGTACTGAATTAAAAAATAAAAATAAAAACCTATTTAGGATAGGTTTTTTTTTTTTTGGTTAGAACACGTCTCTTTAAAAAGATACAATATTTAACTGTGTTTAATTATGTGGTTAAAAATTAACACCGTACCAGACACAAAAGTTGACTAATATGACATTCTATTAAATTCATATATAACCTTTTACTTAAATATCATGTTAAATTATTGTAAGAGATAATTCAACTATTAAGATATTTTATTTTTGACTGAAAAATTAGAAGTTGGAACCGATACTTTCACACAATCGTTATTGAACTAAAAAATTCATTAGATTAAAAAGCTTAATCTTGTTGGTTAGAATAAATTTAATTATTTTTTTAATTGTCACGATTTGAGCTTCATATTTAAACTTTTAAGTTTGTTGATGCAGTTAATAGGCCGCCAATATGCCCGGCCTGCGTGTGCTGTGAGCCACCACCGGCGGGATCCTGTTGCCGGTGCTGCGCTACTCCGATTCAGACTTCATCTCAGAACGGGTCGCCATGAAAAAAACTTGCTGCTCTGTCCATGGCGAGTACATCAAACGATTTGAAGACGATATGCTTTGAGAATAAGGAGAAGACTATCTCCATGCACAAGAAAAAAAGAAAAGAAAGTAGATTTGTTTTAATTTGGTTAATGTCTGATTAATGTTGTTATATATATGATGTTAATGAAGCCAGTTTGATATTCCAAGTGAAGAATAAATTAACGGAATTAAATAA

mRNA sequence

ATTATAAATACCAATACATACAGCTTCAAATCTTCACCAATCCAAAATTAAGCTACATACCAATACCCCCATCACTATTATTTCTCCTAAAAAATTCTAGCAATGGCCACACATAAATTCTCTCTAAGCTCTGTTTTCATGACGGTTCTCGTCTTCGCCATGGTTCTCTCTCCCATGACGATTCCAACCGCCGAAGCTACTCGTGTGCTTTTGCAGCAAATTAATAGGCCGCCAATATGCCCGGCCTGCGTGTGCTGTGAGCCACCACCGGCGGGATCCTGTTGCCGGTGCTGCGCTACTCCGATTCAGACTTCATCTCAGAACGGGTCGCCATGAAAAAAACTTGCTGCTCTGTCCATGGCGAGTACATCAAACGATTTGAAGACGATATGCTTTGAGAATAAGGAGAAGACTATCTCCATGCACAAGAAAAAAAGAAAAGAAAGTAGATTTGTTTTAATTTGGTTAATGTCTGATTAATGTTGTTATATATATGATGTTAATGAAGCCAGTTTGATATTCCAAGTGAAGAATAAATTAACGGAATTAAATAA

Coding sequence (CDS)

ATGGCCACACATAAATTCTCTCTAAGCTCTGTTTTCATGACGGTTCTCGTCTTCGCCATGGTTCTCTCTCCCATGACGATTCCAACCGCCGAAGCTACTCGTGTGCTTTTGCAGCAAATTAATAGGCCGCCAATATGCCCGGCCTGCGTGTGCTGTGAGCCACCACCGGCGGGATCCTGTTGCCGGTGCTGCGCTACTCCGATTCAGACTTCATCTCAGAACGGGTCGCCATGA

Protein sequence

MATHKFSLSSVFMTVLVFAMVLSPMTIPTAEATRVLLQQINRPPICPACVCCEPPPAGSCCRCCATPIQTSSQNGSP

Homology

[Close]

BLAST of Lsi02G029710 vs. ExPASy TrEMBL
Match: A0A0A0K7Y9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452230 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28
Identity = 68/77 (88.31%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MATHKFSLSSVFMTVLVFAMVLSPMTIPTAEATRVLLQQINRPPICPACVCCEPPPAGSC 60
          MA  K  L+SVF+TVLVFAMVLSPMT PTA ATRVLLQQINRPPICPACVCCEPPPAGSC
Sbjct: 1  MAIPKLPLTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSC 60

Query: 61 CRCCATPIQTSSQNGSP 78
          CRCCA+PIQTSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

[Close]

BLAST of Lsi02G029710 vs. ExPASy TrEMBL
Match: A0A5A7UWJ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00530 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 66/77 (85.71%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MATHKFSLSSVFMTVLVFAMVLSPMTIPTAEATRVLLQQINRPPICPACVCCEPPPAGSC 60
          MA  K  ++SVFMTVLVFAM+LSPMTIPTA ATRVLLQQ+NRPPICPACVCCEP PAGSC
Sbjct: 1  MAIPKSPITSVFMTVLVFAMLLSPMTIPTATATRVLLQQLNRPPICPACVCCEPAPAGSC 60

Query: 61 CRCCATPIQTSSQNGSP 78
          CRCCA+PIQTSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

[Close]

BLAST of Lsi02G029710 vs. ExPASy TrEMBL
Match: A0A6J1JPW7 (uncharacterized protein LOC111488758 OS=Cucurbita maxima OX=3661 GN=LOC111488758 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 3  THKFSLSSVFMTVLVFAMVLSPMTIPTAEATRVLLQQINRPPICPACVCCEPPPAGSCCR 62
          TH FS  S+F+TVLVFAMVLSPMTI TA ATR LLQQ+NRPPICPACVCCEP PAGSCCR
Sbjct: 4  THNFSPISIFVTVLVFAMVLSPMTISTANATRALLQQVNRPPICPACVCCEPAPAGSCCR 63

Query: 63 CCATPIQTSSQNGSP 78
          CCATPIQTSSQNGSP
Sbjct: 64 CCATPIQTSSQNGSP 78

[Close]

BLAST of Lsi02G029710 vs. ExPASy TrEMBL
Match: A0A6J1GR88 (uncharacterized protein LOC111456398 OS=Cucurbita moschata OX=3662 GN=LOC111456398 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.4e-27
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 3  THKFSLSSVFMTVLVFAMVLSPMTIPTAEATRVLLQQINRPPICPACVCCEPPPAGSCCR 62
          THKF+ +S+F+TVLVFAMVLSP TI T  ATRVLLQQ+NRPPICPACVCCEP PAGSCCR
Sbjct: 4  THKFTPTSIFVTVLVFAMVLSPTTISTVNATRVLLQQVNRPPICPACVCCEPAPAGSCCR 63

Query: 63 CCATPIQTSSQNGSP 78
          CCATPIQTSSQ+GSP
Sbjct: 64 CCATPIQTSSQSGSP 78

[Close]

BLAST of Lsi02G029710 vs. ExPASy TrEMBL
Match: A0A6J1CSH3 (uncharacterized protein LOC111013890 OS=Momordica charantia OX=3673 GN=LOC111013890 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-20
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 1  MATHKFSLSSVFMTVLVFAMVLSPMTIPTAEATRVLLQQINRPPICPACVCCEPPPAGSC 60
          MA  KFSLSS+F+TVLVF MVLSPM I TA ATR+ L Q+ RPPICPACVCC+PPP GSC
Sbjct: 5  MAAPKFSLSSIFVTVLVFTMVLSPM-ISTAAATRLPL-QVRRPPICPACVCCKPPPPGSC 64

Query: 61 CR-CCATPIQTSSQNGSP 78
          C+ CCATPI+TSSQNGSP
Sbjct: 65 CKQCCATPIETSSQNGSP 80

[Close]

BLAST of Lsi02G029710 vs. NCBI nr
Match: XP_038896231.1 (uncharacterized protein LOC120084509 [Benincasa hispida])

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 69/77 (89.61%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MATHKFSLSSVFMTVLVFAMVLSPMTIPTAEATRVLLQQINRPPICPACVCCEPPPAGSC 60
          MA+ KFSL+SV MTVLVF MVLSPMTIPTA ATRVLLQQINRPPICPACVCCEP PAGSC
Sbjct: 1  MASAKFSLTSVLMTVLVFTMVLSPMTIPTANATRVLLQQINRPPICPACVCCEPAPAGSC 60

Query: 61 CRCCATPIQTSSQNGSP 78
          CRCCA+PIQTSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

[Close]

BLAST of Lsi02G029710 vs. NCBI nr
Match: KGN45568.1 (hypothetical protein Csa_016454 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28
Identity = 68/77 (88.31%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MATHKFSLSSVFMTVLVFAMVLSPMTIPTAEATRVLLQQINRPPICPACVCCEPPPAGSC 60
          MA  K  L+SVF+TVLVFAMVLSPMT PTA ATRVLLQQINRPPICPACVCCEPPPAGSC
Sbjct: 1  MAIPKLPLTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSC 60

Query: 61 CRCCATPIQTSSQNGSP 78
          CRCCA+PIQTSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

[Close]

BLAST of Lsi02G029710 vs. NCBI nr
Match: KAA0059464.1 (hypothetical protein E6C27_scaffold242G001940 [Cucumis melo var. makuwa] >TYK03859.1 hypothetical protein E5676_scaffold347G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 3.5e-27
Identity = 66/77 (85.71%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MATHKFSLSSVFMTVLVFAMVLSPMTIPTAEATRVLLQQINRPPICPACVCCEPPPAGSC 60
          MA  K  ++SVFMTVLVFAM+LSPMTIPTA ATRVLLQQ+NRPPICPACVCCEP PAGSC
Sbjct: 1  MAIPKSPITSVFMTVLVFAMLLSPMTIPTATATRVLLQQLNRPPICPACVCCEPAPAGSC 60

Query: 61 CRCCATPIQTSSQNGSP 78
          CRCCA+PIQTSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

[Close]

BLAST of Lsi02G029710 vs. NCBI nr
Match: XP_022992462.1 (uncharacterized protein LOC111488758 [Cucurbita maxima])

HSP 1 Score: 131.3 bits (329), Expect = 3.5e-27
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 3  THKFSLSSVFMTVLVFAMVLSPMTIPTAEATRVLLQQINRPPICPACVCCEPPPAGSCCR 62
          TH FS  S+F+TVLVFAMVLSPMTI TA ATR LLQQ+NRPPICPACVCCEP PAGSCCR
Sbjct: 4  THNFSPISIFVTVLVFAMVLSPMTISTANATRALLQQVNRPPICPACVCCEPAPAGSCCR 63

Query: 63 CCATPIQTSSQNGSP 78
          CCATPIQTSSQNGSP
Sbjct: 64 CCATPIQTSSQNGSP 78

[Close]

BLAST of Lsi02G029710 vs. NCBI nr
Match: KAG6575497.1 (hypothetical protein SDJN03_26136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.6 bits (327), Expect = 5.9e-27
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 3  THKFSLSSVFMTVLVFAMVLSPMTIPTAEATRVLLQQINRPPICPACVCCEPPPAGSCCR 62
          THKF+ +S+F+TVLVFAMVLSP TI TA ATRVLLQQ+NRPPICPACVCCEP PAGSCCR
Sbjct: 4  THKFTPTSIFVTVLVFAMVLSPTTISTANATRVLLQQVNRPPICPACVCCEPAPAGSCCR 63

Query: 63 CCATPIQTSSQNGSP 78
          CCATPIQTSSQ+GSP
Sbjct: 64 CCATPIQTSSQSGSP 78

[Close]

BLAST of Lsi02G029710 vs. TAIR 10
Match: AT1G51920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-09
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 10 SVFMTVLVFAMVLSPMTIPTAEATRVLLQQI-NRPPICPACVCCEPPPAGSCCRCCATPI 69
          S+F+ + V  ++L  + +  + ATR+    I +R PICPACVCCEP P GSCCRCCA+PI
Sbjct: 9  SIFLKLFVLFLLL-VLPLSQSNATRIPRAPISSRRPICPACVCCEPAPLGSCCRCCASPI 68

Query: 70 QTSSQNGS 77
           T + + S
Sbjct: 69 VTQTHHHS 75

[Close]

BLAST of Lsi02G029710 vs. TAIR 10
Match: AT1G51913.1 (LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: cryptdin protein-related (TAIR:AT1G51915.1); Has 22 Blast hits to 22 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.4 bits (93), Expect = 7.5e-04
Identity = 29/68 (42.65%), Postives = 36/68 (52.94%), Query Frame = 0


Query: 7  SLSSVFMTVLVFAMVLSPMTIPTAEATRVLL----QQINRPPI----CPACVCCEPPPAG 66
          S S +F++VLV  +V SP      +A RV L      + R P+    CPAC CC P P G
Sbjct: 6  SSSILFLSVLVLVLVFSPTL--QCQAARVHLDVEGHMLLRAPVPIRFCPACACCAPAPKG 65

The following BLAST results are available for this feature:

BLAST of Lsi02G029710 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G029710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7Y9	1.5e-28	88.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452230 PE=4 SV=1	[more]
A0A5A7UWJ7	1.7e-27	85.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1JPW7	1.7e-27	86.67	uncharacterized protein LOC111488758 OS=Cucurbita maxima OX=3661 GN=LOC111488758...	[more]
A0A6J1GR88	8.4e-27	84.00	uncharacterized protein LOC111456398 OS=Cucurbita moschata OX=3662 GN=LOC1114563...	[more]
A0A6J1CSH3	1.2e-20	76.92	uncharacterized protein LOC111013890 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Lsi02G029710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896231.1	1.1e-28	89.61	uncharacterized protein LOC120084509 [Benincasa hispida]	[more]
KGN45568.1	3.1e-28	88.31	hypothetical protein Csa_016454 [Cucumis sativus]	[more]
KAA0059464.1	3.5e-27	85.71	hypothetical protein E6C27_scaffold242G001940 [Cucumis melo var. makuwa] >TYK038...	[more]
XP_022992462.1	3.5e-27	86.67	uncharacterized protein LOC111488758 [Cucurbita maxima]	[more]
KAG6575497.1	5.9e-27	85.33	hypothetical protein SDJN03_26136, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi02G029710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51920.1	2.0e-09	48.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G51913.1	7.5e-04	42.65	LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: cry...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36328	TRANSMEMBRANE PROTEIN	coord: 7..77
None	No IPR available	PANTHER	PTHR36328:SF1	TRANSMEMBRANE PROTEIN	coord: 7..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G029710.1	Lsi02G029710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division