Lsi02G029560 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G029560
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ESCRT-related protein CHMP1B
Location	chr02: 35689495 .. 35690106 (+)
RNA-Seq Expression	Lsi02G029560
Synteny	Lsi02G029560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAACACCGAGAAATTGTTGAATCAAATAATGGAATTGAAGTTCACTTCGAAGTCGCTGCAGCGCCAAGCCAGGAAGTGCGAGAAGGAAGAGAAATCCGAGAAGCTCAAGATCAAGAAGGCTATGGAGAAGGGCAACGTTGATGGAGCCCGAATTTACGCTGAGAACGCGATCCGTAAACGTACAGAACAGATGAACTATCTCCGTCTTTCTTCGAGGCTCGATGCTGTTGTGGCTCGGCTCGACACACAGGCCAAGATGACCACGATTAACAAGTCCATGGCGTCGATCGTCAAGTCCTTAGAATCTTCTTTGGCGACTGGGAATTTGCAGAAGATGTCCGAGACTATGGACCAGTTTGAGAAGCAGTTTGTGAATATGGAGGTCCAGGCAGAGTTCATGGAAAATGCAATGGCTGGATCGACATCGCTTTCGACTCCGGAAGGAGAAGTCAACAGCTTGATGCAGCAGGTCGCGGATGATTACGGTCTGGAAGTCTCCGTCGGGCTACCGCAGCCGGCGTCACATGCAGTGCCAACCAAGGAAACCGAGAAAGTTGACGAGGACGACTTAACAAGGCGCCTTGCAGAGCTTAAGGCCAGAGGTTAA

mRNA sequence

ATGGGGAACACCGAGAAATTGTTGAATCAAATAATGGAATTGAAGTTCACTTCGAAGTCGCTGCAGCGCCAAGCCAGGAAGTGCGAGAAGGAAGAGAAATCCGAGAAGCTCAAGATCAAGAAGGCTATGGAGAAGGGCAACGTTGATGGAGCCCGAATTTACGCTGAGAACGCGATCCGTAAACGTACAGAACAGATGAACTATCTCCGTCTTTCTTCGAGGCTCGATGCTGTTGTGGCTCGGCTCGACACACAGGCCAAGATGACCACGATTAACAAGTCCATGGCGTCGATCGTCAAGTCCTTAGAATCTTCTTTGGCGACTGGGAATTTGCAGAAGATGTCCGAGACTATGGACCAGTTTGAGAAGCAGTTTGTGAATATGGAGGTCCAGGCAGAGTTCATGGAAAATGCAATGGCTGGATCGACATCGCTTTCGACTCCGGAAGGAGAAGTCAACAGCTTGATGCAGCAGGTCGCGGATGATTACGGTCTGGAAGTCTCCGTCGGGCTACCGCAGCCGGCGTCACATGCAGTGCCAACCAAGGAAACCGAGAAAGTTGACGAGGACGACTTAACAAGGCGCCTTGCAGAGCTTAAGGCCAGAGGTTAA

Coding sequence (CDS)

ATGGGGAACACCGAGAAATTGTTGAATCAAATAATGGAATTGAAGTTCACTTCGAAGTCGCTGCAGCGCCAAGCCAGGAAGTGCGAGAAGGAAGAGAAATCCGAGAAGCTCAAGATCAAGAAGGCTATGGAGAAGGGCAACGTTGATGGAGCCCGAATTTACGCTGAGAACGCGATCCGTAAACGTACAGAACAGATGAACTATCTCCGTCTTTCTTCGAGGCTCGATGCTGTTGTGGCTCGGCTCGACACACAGGCCAAGATGACCACGATTAACAAGTCCATGGCGTCGATCGTCAAGTCCTTAGAATCTTCTTTGGCGACTGGGAATTTGCAGAAGATGTCCGAGACTATGGACCAGTTTGAGAAGCAGTTTGTGAATATGGAGGTCCAGGCAGAGTTCATGGAAAATGCAATGGCTGGATCGACATCGCTTTCGACTCCGGAAGGAGAAGTCAACAGCTTGATGCAGCAGGTCGCGGATGATTACGGTCTGGAAGTCTCCGTCGGGCTACCGCAGCCGGCGTCACATGCAGTGCCAACCAAGGAAACCGAGAAAGTTGACGAGGACGACTTAACAAGGCGCCTTGCAGAGCTTAAGGCCAGAGGTTAA

Protein sequence

MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIRKRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQFEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVPTKETEKVDEDDLTRRLAELKARG

Homology

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BLAST of Lsi02G029560 vs. ExPASy Swiss-Prot
Match: Q9SSM4 (ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.0e-93
Identity = 183/203 (90.15%), Postives = 196/203 (96.55%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KL+NQI +LKFTSKSLQRQ+RKCEKEEK+EKLK+KKA+EKGN+DGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKMTTI KSM +IVKSLESSLATGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TK  EKVDEDDL+RRLAELKARG
Sbjct: 181 TKTEEKVDEDDLSRRLAELKARG 203

[Close]

BLAST of Lsi02G029560 vs. ExPASy Swiss-Prot
Match: Q8LE58 (ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 4.5e-93
Identity = 183/203 (90.15%), Postives = 194/203 (95.57%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KL+NQI ELKFTSKSLQRQARKCEKEE+SEKLK+KKA+EKGN+DGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120
           KR+EQMNYLRLSSRLDAVVARLDTQAKM TI KSM +IVKSLESSL TGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFM+NAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TK  EKV+EDDLTRRLAELKARG
Sbjct: 181 TKTEEKVEEDDLTRRLAELKARG 203

[Close]

BLAST of Lsi02G029560 vs. ExPASy Swiss-Prot
Match: Q84VG1 (ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE=2 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 3.4e-85
Identity = 175/205 (85.37%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGN EKL+ QI +LKFTSKSLQRQARKCEKEEK +KLK+KKA+EKGN+DGARIYAENAIR
Sbjct: 1   MGNPEKLMTQIFDLKFTSKSLQRQARKCEKEEKEQKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120
           KRTE MNYLRL+SRLDAVVARLDTQAKM  I KSMA+IVKSL+S+LATGNLQKMSETMD 
Sbjct: 61  KRTEHMNYLRLASRLDAVVARLDTQAKMQVIGKSMANIVKSLDSALATGNLQKMSETMDN 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FE+QFVNMEVQAEFME AMAGSTSLSTPE EVNSLMQQVADDYGLEVSVGLPQ A+HA+P
Sbjct: 121 FERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQAAAHAIP 180

Query: 181 -TKETEK-VDEDDLTRRLAELKARG 204
             KE EK VDEDDL+RRLAELKARG
Sbjct: 181 AAKEKEKAVDEDDLSRRLAELKARG 205

[Close]

BLAST of Lsi02G029560 vs. ExPASy Swiss-Prot
Match: O96552 (Charged multivesicular body protein 1 OS=Dictyostelium discoideum OX=44689 GN=chmp1 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.6e-44
Identity = 92/194 (47.42%), Postives = 152/194 (78.35%), Query Frame = 0


Query: 9   NQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIRKRTEQMNY 68
           NQ+ +LKFTSK L++Q++K E+ EK++K+K+KKA+E+GN+DGARIYA+NAIR++ + +NY
Sbjct: 3   NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNY 62

Query: 69  LRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQFEKQFVNM 128
           LRL+SR+DAV +R++T  +M ++  SMA+IVKS+E S+   +L+K+++ MDQFE+QF ++
Sbjct: 63  LRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDL 122

Query: 129 EVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVPTKETEKVD 188
           +VQ+ ++ENAM  +T+LSTP  +V+ L+ QVAD++GL V + +      + P+++ ++ +
Sbjct: 123 DVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQM-----GSAPSEKVQQGE 182

Query: 189 EDDLTRRLAELKAR 203
            D+LT RL  LK +
Sbjct: 183 TDELTERLNRLKQK 191

[Close]

BLAST of Lsi02G029560 vs. ExPASy Swiss-Prot
Match: Q5E994 (Charged multivesicular body protein 1b OS=Bos taurus OX=9913 GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 7.3e-43
Identity = 95/200 (47.50%), Postives = 150/200 (75.00%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           M N EK    +  LKF +K L R A+KC+KEEK+EK KIKKA++KGN++ ARI+AENAIR
Sbjct: 1   MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120
           ++ + +N+LR+S+R+DAV AR+ T   M  + KSMA +VKS++++L T NL+K+S  MD+
Sbjct: 61  QKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDK 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FE QF  ++VQ + ME+ M+ +T+L+TP+G+V+ L+Q++AD+ GL++++ LPQ  + +V 
Sbjct: 121 FEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVG 180

Query: 181 TKETEKVDEDDLTRRLAELK 201
           T      ++D+L++RLA L+
Sbjct: 181 T-SVASAEQDELSQRLARLR 196

[Close]

BLAST of Lsi02G029560 vs. ExPASy TrEMBL
Match: A0A5A7V0Y1 (ESCRT-related protein CHMP1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00700 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.7e-99
Identity = 202/203 (99.51%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLES+LATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TKETEKVDEDDLTRRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

[Close]

BLAST of Lsi02G029560 vs. ExPASy TrEMBL
Match: A0A0A0K779 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452000 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.7e-99
Identity = 202/203 (99.51%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLES+LATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TKETEKVDEDDLTRRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

[Close]

BLAST of Lsi02G029560 vs. ExPASy TrEMBL
Match: A0A1S3CHC1 (ESCRT-related protein CHMP1B OS=Cucumis melo OX=3656 GN=LOC103500745 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.7e-99
Identity = 202/203 (99.51%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLES+LATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TKETEKVDEDDLTRRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

[Close]

BLAST of Lsi02G029560 vs. ExPASy TrEMBL
Match: A0A6J1CS80 (ESCRT-related protein CHMP1B OS=Momordica charantia OX=3673 GN=LOC111014278 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.3e-98
Identity = 201/203 (99.01%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEK+EKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           T+ETEKVDEDDLTRRLAELKARG
Sbjct: 181 TRETEKVDEDDLTRRLAELKARG 203

[Close]

BLAST of Lsi02G029560 vs. ExPASy TrEMBL
Match: A0A6J1KJS6 (ESCRT-related protein CHMP1B OS=Cucurbita maxima OX=3661 GN=LOC111494652 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.1e-97
Identity = 199/203 (98.03%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KLLNQIMELKFTSKSLQRQARKCEKEEK+EKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSL TGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TKETEKVDEDDL+RRLAELKARG
Sbjct: 181 TKETEKVDEDDLSRRLAELKARG 203

[Close]

BLAST of Lsi02G029560 vs. NCBI nr
Match: XP_004141672.1 (ESCRT-related protein CHMP1B [Cucumis sativus] >XP_008462374.1 PREDICTED: ESCRT-related protein CHMP1B [Cucumis melo] >KAA0059449.1 ESCRT-related protein CHMP1B [Cucumis melo var. makuwa] >KGN45545.1 hypothetical protein Csa_015849 [Cucumis sativus] >TYK03875.1 ESCRT-related protein CHMP1B [Cucumis melo var. makuwa])

HSP 1 Score: 370.2 bits (949), Expect = 1.2e-98
Identity = 202/203 (99.51%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLES+LATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TKETEKVDEDDLTRRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

[Close]

BLAST of Lsi02G029560 vs. NCBI nr
Match: XP_022144640.1 (ESCRT-related protein CHMP1B [Momordica charantia])

HSP 1 Score: 369.0 bits (946), Expect = 2.6e-98
Identity = 201/203 (99.01%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEK+EKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           T+ETEKVDEDDLTRRLAELKARG
Sbjct: 181 TRETEKVDEDDLTRRLAELKARG 203

[Close]

BLAST of Lsi02G029560 vs. NCBI nr
Match: XP_038896979.1 (ESCRT-related protein CHMP1B [Benincasa hispida])

HSP 1 Score: 369.0 bits (946), Expect = 2.6e-98
Identity = 202/203 (99.51%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVN LMQQVADDYGLEVSVGLPQPASHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNILMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TKETEKVDEDDLTRRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

[Close]

BLAST of Lsi02G029560 vs. NCBI nr
Match: XP_022964312.1 (ESCRT-related protein CHMP1B [Cucurbita moschata] >XP_023000394.1 ESCRT-related protein CHMP1B [Cucurbita maxima] >XP_023513530.1 ESCRT-related protein CHMP1B [Cucurbita pepo subsp. pepo] >KAG6593503.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025850.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 365.9 bits (938), Expect = 2.2e-97
Identity = 199/203 (98.03%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KLLNQIMELKFTSKSLQRQARKCEKEEK+EKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTDKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSL TGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLTTGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TKETEKVDEDDL+RRLAELKARG
Sbjct: 181 TKETEKVDEDDLSRRLAELKARG 203

[Close]

BLAST of Lsi02G029560 vs. NCBI nr
Match: XP_022954345.1 (ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_023549216.1 ESCRT-related protein CHMP1B-like [Cucurbita pepo subsp. pepo] >KAG6575490.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014033.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 365.5 bits (937), Expect = 2.9e-97
Identity = 199/203 (98.03%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEK+EKLKIKKAMEKGNVDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKAEKLKIKKAMEKGNVDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120
           KRTEQMNYLRLSSRLDAVVARLDTQAKM+TINKSMASIVKSLESSLATGNLQKMSE MDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMASIVKSLESSLATGNLQKMSENMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAMP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TKETEKVDEDDLTRRLAELKARG
Sbjct: 181 TKETEKVDEDDLTRRLAELKARG 203

[Close]

BLAST of Lsi02G029560 vs. TAIR 10
Match: AT1G73030.1 (SNF7 family protein )

HSP 1 Score: 343.2 bits (879), Expect = 1.4e-94
Identity = 183/203 (90.15%), Postives = 196/203 (96.55%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KL+NQI +LKFTSKSLQRQ+RKCEKEEK+EKLK+KKA+EKGN+DGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKMTTI KSM +IVKSLESSLATGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TK  EKVDEDDL+RRLAELKARG
Sbjct: 181 TKTEEKVDEDDLSRRLAELKARG 203

[Close]

BLAST of Lsi02G029560 vs. TAIR 10
Match: AT1G17730.1 (vacuolar protein sorting 46.1 )

HSP 1 Score: 342.0 bits (876), Expect = 3.2e-94
Identity = 183/203 (90.15%), Postives = 194/203 (95.57%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIR 60
           MGNT+KL+NQI ELKFTSKSLQRQARKCEKEE+SEKLK+KKA+EKGN+DGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQ 120
           KR+EQMNYLRLSSRLDAVVARLDTQAKM TI KSM +IVKSLESSL TGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAVP 180
           FEKQFVNMEVQAEFM+NAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TKETEKVDEDDLTRRLAELKARG 204
           TK  EKV+EDDLTRRLAELKARG
Sbjct: 181 TKTEEKVEEDDLTRRLAELKARG 203

[Close]

BLAST of Lsi02G029560 vs. TAIR 10
Match: AT2G06530.1 (SNF7 family protein )

HSP 1 Score: 58.5 bits (140), Expect = 7.0e-09
Identity = 41/161 (25.47%), Postives = 82/161 (50.93%), Query Frame = 0


Query: 19  KSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIRKRTEQMNYLRLSSRLDAV 78
           + ++R+ +  + +EK    +IKK  ++G +   ++ A++ IR R +   + +L S+L  V
Sbjct: 28  REIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGV 87

Query: 79  VARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQFEKQFVNMEVQAEFMENA 138
             R+ T      + ++M  + K++       NL  + + M +FE+Q   ME+ +E M +A
Sbjct: 88  SLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDA 147

Query: 139 MAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPASHAV 180
           +  +      E E   L+ QV D+ G++++  L    S AV
Sbjct: 148 IDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNAPSGAV 188

[Close]

BLAST of Lsi02G029560 vs. TAIR 10
Match: AT5G44560.1 (SNF7 family protein )

HSP 1 Score: 52.0 bits (123), Expect = 6.6e-07
Identity = 48/201 (23.88%), Postives = 85/201 (42.29%), Query Frame = 0


Query: 13  ELKFTSKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIRKRTEQMNYLRLS 72
           E+   ++ ++R+    + EEK    +IKK  + GN    +I A   +R R +  N     
Sbjct: 20  EMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSR 79

Query: 73  SRLDAVVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQFEKQFVNMEVQA 132
           +++  V          T+I+  M    K++ +        K ++ +  F+KQ   +++  
Sbjct: 80  AQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTI 139

Query: 133 EFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-------------PASHAV 192
           E M  A+  +      E E   L  QV D+ G+ V+  L               PAS A 
Sbjct: 140 EMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAA 199

Query: 193 PTKETEKVDEDDLTRRLAELK 201
             K +E  + D+L +RLA L+
Sbjct: 200 TNKNSESSEVDELEKRLASLR 220

[Close]

BLAST of Lsi02G029560 vs. TAIR 10
Match: AT5G44560.2 (SNF7 family protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.9e-06
Identity = 47/196 (23.98%), Postives = 83/196 (42.35%), Query Frame = 0


Query: 18  SKSLQRQARKCEKEEKSEKLKIKKAMEKGNVDGARIYAENAIRKRTEQMNYLRLSSRLDA 77
           ++ ++R+    + EEK    +IKK  + GN    +I A   +R R +  N     +++  
Sbjct: 5   TRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRG 64

Query: 78  VVARLDTQAKMTTINKSMASIVKSLESSLATGNLQKMSETMDQFEKQFVNMEVQAEFMEN 137
           V          T+I+  M    K++ +        K ++ +  F+KQ   +++  E M  
Sbjct: 65  VTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSE 124

Query: 138 AMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-------------PASHAVPTKET 197
           A+  +      E E   L  QV D+ G+ V+  L               PAS A   K +
Sbjct: 125 AIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAATNKNS 184

Query: 198 EKVDEDDLTRRLAELK 201
           E  + D+L +RLA L+
Sbjct: 185 ESSEVDELEKRLASLR 200

The following BLAST results are available for this feature:

BLAST of Lsi02G029560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSM4	2.0e-93	90.15	ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1	[more]
Q8LE58	4.5e-93	90.15	ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1	[more]
Q84VG1	3.4e-85	85.37	ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE...	[more]
O96552	6.6e-44	47.42	Charged multivesicular body protein 1 OS=Dictyostelium discoideum OX=44689 GN=ch...	[more]
Q5E994	7.3e-43	47.50	Charged multivesicular body protein 1b OS=Bos taurus OX=9913 GN=CHMP1B PE=2 SV=1	[more]

BLAST of Lsi02G029560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V0Y1	5.7e-99	99.51	ESCRT-related protein CHMP1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0K779	5.7e-99	99.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452000 PE=4 SV=1	[more]
A0A1S3CHC1	5.7e-99	99.51	ESCRT-related protein CHMP1B OS=Cucumis melo OX=3656 GN=LOC103500745 PE=4 SV=1	[more]
A0A6J1CS80	1.3e-98	99.01	ESCRT-related protein CHMP1B OS=Momordica charantia OX=3673 GN=LOC111014278 PE=4...	[more]
A0A6J1KJS6	1.1e-97	98.03	ESCRT-related protein CHMP1B OS=Cucurbita maxima OX=3661 GN=LOC111494652 PE=4 SV...	[more]

BLAST of Lsi02G029560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141672.1	1.2e-98	99.51	ESCRT-related protein CHMP1B [Cucumis sativus] >XP_008462374.1 PREDICTED: ESCRT-...	[more]
XP_022144640.1	2.6e-98	99.01	ESCRT-related protein CHMP1B [Momordica charantia]	[more]
XP_038896979.1	2.6e-98	99.51	ESCRT-related protein CHMP1B [Benincasa hispida]	[more]
XP_022964312.1	2.2e-97	98.03	ESCRT-related protein CHMP1B [Cucurbita moschata] >XP_023000394.1 ESCRT-related ...	[more]
XP_022954345.1	2.9e-97	98.03	ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_023549216.1 ESCRT-rel...	[more]

BLAST of Lsi02G029560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73030.1	1.4e-94	90.15	SNF7 family protein	[more]
AT1G17730.1	3.2e-94	90.15	vacuolar protein sorting 46.1	[more]
AT2G06530.1	7.0e-09	25.47	SNF7 family protein	[more]
AT5G44560.1	6.6e-07	23.88	SNF7 family protein	[more]
AT5G44560.2	1.9e-06	23.98	SNF7 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 111..138
None	No IPR available	COILS	Coil	Coil	coord: 182..202
None	No IPR available	COILS	Coil	Coil	coord: 11..45
None	No IPR available	GENE3D	6.10.140.1230		coord: 3..173 e-value: 1.4E-38 score: 134.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..191
None	No IPR available	PANTHER	PTHR10476:SF57	ESCRT-RELATED PROTEIN CHMP1A-RELATED	coord: 5..203
None	No IPR available	PANTHER	PTHR10476	CHARGED MULTIVESICULAR BODY PROTEIN	coord: 5..203
IPR005024	Snf7 family	PFAM	PF03357	Snf7	coord: 11..176 e-value: 4.1E-12 score: 46.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G029560.1	Lsi02G029560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032509	endosome transport via multivesicular body sorting pathway
biological_process	GO:0045324	late endosome to vacuole transport
biological_process	GO:0015031	protein transport
biological_process	GO:0007034	vacuolar transport
cellular_component	GO:0000815	ESCRT III complex
cellular_component	GO:0005771	multivesicular body