Lsi02G029310 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G029310
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Transmembrane protein, putative
Location	chr02: 35501473 .. 35505066 (-)
RNA-Seq Expression	Lsi02G029310
Synteny	Lsi02G029310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTAATTGCTAGTTTACAGAACAATTAGGGTACTTTGTAGTTCTAACATTGGTCTTCCACCTTTTATCTTGTGGCTTCTACGTGGAAACGAATGATGGAGTTCTTTCTTGAATTCTTCTCCGTTCTCTCCCCGTTTTCCTTCTACGAAACTTAGACCAGGCTTAGATAAGATAAAGTATTCCAGGCTTTCAATTCTTAACATGTTTTTTTGTAATTGAAAATTTGGGGTTCGTTTCTTTCATATTTAGAGCAGATTTGCTTTCTTTCAAGTGTTAATTTCATAATCTCTCTTACTGTTTTCATAGAGGGGTGGCTTCCAACTGAAGGGAATATATTGTGTGCAAAAGTCGTCTGAAGTCTGTTTTTAGGGAGACCAGCTGCTGTAAGCTAAGTCTTTGACAGAAAACGAACGGTTCTTCTATTAGGTACTTCCTTCCCACCCTCTTATTTTCTTTTGGGACTGGACTATGTAATCTATATTGGGCTTGATGTGGATCAGTGGATGGTTGTTGAGAATGAAGAAACTGATGACTTCTTTAATCTTGTTAACTTGCATTTTAGTCTATGGAAAGGGTTAGTCAATAATTAGATATATATACTGAAATAAACAGTTACATTGTCAACGACTCAACAGAAGGGTAATTAGTTCAGAATTGGAGCGCTTGAAAATGTGGTTGCCAATTTTACTAGAATTGGTATTTGATCTTCTAAATCTTTTTTTTTTTATATCCATGTGTGTCGTCCAGGCCAGTTTACGCACACCTCGACTAATCTCATGATTTCTTAGCCATTTATTGAGACTATGTCTCTTTTTTTTACCACTAGGCCAACTCATGATGGTTATTTGAACTCCTAAACTATTATTCACTTAGATGAGGGCTCCACCCAAGTATACTTGCACTGCCAAGGCTTTAGGGTTTGAGATGTTTGGAACTTTGGAGATACTTCCAAGTGTCCAAGGATTCAAGCCCTAGATGATTAAGGTTAAATTACTAGTTTATTCATAACAAGTCTCTAAACTTTAAAAAAGAGAAAAAAAAAAAAAAAAAATGAAAGAACTCCAATAGGTTTCTAAAATTTCAAATTTGTTAACTAATAGGTCTTTGAATTTTAAAAAACATTTTATAAGTAAGACCCCATTTGGTAACAATTTGATTTTTGGTTTTTTTAAAATCGTGTTTGTTTTCTTCTCACTATTTTTTTACAATAATTTTCATTTTTTCTAAGTAAACATTTGAATTCTTAACCGAATTCCAAAACAAACACAAGTTTTTTCCCCCCAACTATTGTGGTAGTGGGATATCAGACTTTCAACCTTTGAGATGTTAATTGGTGTCTTATCCATTGAATTAGGCTCGATTGGACTTTGAAAACACTCTGAAAAAAGTAGATGACAAAACAAAGAAACCAATAAATGGAAATGGTGTTCATAAACTTAATTTTAAAAAATCTTAATCAAAAAACGAAATGATTATCAAATGGGGCATAAGAGATCTATTTGACTAAAGCTGTAAATGCTAAGATTTATTAGATACGAAATAAAAGTTTGATGACTTCTAAGACACTTTAAAATATTCAAGGACTTATTAGCCATAGCATTGAAAGTTTGAGCACCTATAAGAGTCTTTAAAATTCTGGAGCCTATTCATCACAACCCTGATTGTTTAAGGGCGAAATTTGTAATTTAACCAAAATTTACTTAGGCTCGGTTTGCTAACTATTTGGTTTTTTAAAAAGTTGGACTTGTTTCTCAATATTCTATACAATGATTTTCATATTTCTTAAAGAAACACTTGGTTCATTGCTAAATTTGAAAAAACAAAAACAAGTTTCTAAAACCTATTTCTCTCTTTTTTTTTTTTTTTTTTTAGTAAGTTTCCAAAATTGACTTGGTTTAGGTTTGAGATGTTTGGGACTTTGGAGATACTTCCAACTGTCTGGATTCAAGTCCTAGGTGATTAAGGTTAATTTACTATTATAATAAGTCTCTGACCTTGAAAAATCTCAAATAGATTTTTAAATTTTCAACAGTGTTTCTAATAAATCCAGAAACTTTATGTAGTGCCTGTCAAGTCTCTAAACTTTTAATTTGTATCCAATAGGTCTTTGGTTTTTTAGTGTTGTCAAGTCTCTAAACTTTTAAATTTATATCCAATAGGTTTTAGGATTTTAATAGCGTCTTATAAGTAAGGCCTTATTTGATAACAATTTGATTTTTGGTTTTCTAAAATTGTGTTTATTCTCCCACTATTTCTTTAAAATAGTTTTCATTTTTCTTAAGTAAACGTTTGAATTCTTTGGGAATTCCAAAAATGTACACAAGTATTTTTTTCCTCGACAATTAATGGAGTGGGAGATTATACTATCGACCTATAAGATGTTAATAGGTGTCTTATCTATTGAGCTATGCTCGGAATTGATTTTGAAAAGACTTTGAAAAAGTAGATAACAAAACAAAGAAACCAATAGGTGGAAATGATGTTGTAGGGTCAGGCGAGTTGTCCTGTGAGATTAATTGAAGTGTGCGTAAGCTGGCCTGGACACTCACGGATATAAAAAAAATGGTGGAAATGATGTTCATAAGCTTGATTTTCAAAAACCATAATCCAAAAATCAAATGATTATTTAATTGGGTCTAAGAGATCTAATTTGACATAAAGTTGTAAATATTGAGATTTATTAGATTTATTTGAAAATTGTACTTGTTTCTCACAATTCTATACCATGGTACTTATATTTCCTAAAGAAACATCTAATTCATAGCCAAATTAAAAAAGAAAAAAATAAAAACAAGTTTCTAAAAATTATATATTTTTTTAAAGTTTGGTTCGGAAAACACTCCTAAAAAACTAGATAACATAATAAAGAAACTAATTTGAATTTTCAAAAATTAAATGGTTATCAAGCAAGCCTTAAAACTCTTCTTTTCTCCTAGGATTGGGTTTGGGATGGGAAAAACCTCTAATGAAAGTTTGAAGGACATGGATCATGAACATAAGTAGGGCATCGATGTTCAATATGGTATATATTGATGTCTAGTTATTTGTTGGGACAGATTTTCTCTTTTATATGCATGTGTATACTTTCATTTTTTCTCAATGAAATTCAAGTTTTTTTAATGGAAAAAAAATTGTTGAGACAGATTTGTTCTTTTGTTTGTTGAATATTGTATTAGTGAGAGATTTTCTACACAAGAATAATTATAATTGTTGCAGAATATTAATTGATCTACACTTGGTATTAGACTCAAAGACACGCCACCTGAATTGGAAGAGTAGTACCATGTACTTGAGCAGTATTAGATACCCATTTTTTCTATCAGTTCATAATGTGCATCCCCCTAAGGATTGTAACTGTTCAAACTGCAGATAAACCCAAAACCAAAAACATGGCAGTAAAACCAACTGTTGCCTTGCGAGCTGTACTTGTTGGAGGAATTGCAGCGTTTGCTAAAATTGCTGGTGCAATGAAAGCTGCTGGTGGTGCAAAGTTAGGTGCAGCCACAGCTGCCATGACAGCAGCAGCAACTGCAGCTTTGGCAGGATCAAAACAAGACCAGAAGGATGATTCTAAACACTCTCCAAAATGA

mRNA sequence

ATGGCTTTCATAATGTGCATCCCCCTAAGGATTGTAACTGTTCAAACTGCAGATAAACCCAAAACCAAAAACATGGCAGTAAAACCAACTGTTGCCTTGCGAGCTGTACTTGTTGGAGGAATTGCAGCGTTTGCTAAAATTGCTGGTGCAATGAAAGCTGCTGGTGGTGCAAAGTTAGGTGCAGCCACAGCTGCCATGACAGCAGCAGCAACTGCAGCTTTGGCAGGATCAAAACAAGACCAGAAGGATGATTCTAAACACTCTCCAAAATGA

Coding sequence (CDS)

ATGGCTTTCATAATGTGCATCCCCCTAAGGATTGTAACTGTTCAAACTGCAGATAAACCCAAAACCAAAAACATGGCAGTAAAACCAACTGTTGCCTTGCGAGCTGTACTTGTTGGAGGAATTGCAGCGTTTGCTAAAATTGCTGGTGCAATGAAAGCTGCTGGTGGTGCAAAGTTAGGTGCAGCCACAGCTGCCATGACAGCAGCAGCAACTGCAGCTTTGGCAGGATCAAAACAAGACCAGAAGGATGATTCTAAACACTCTCCAAAATGA

Protein sequence

MAFIMCIPLRIVTVQTADKPKTKNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK

Homology

[Close]

BLAST of Lsi02G029310 vs. ExPASy TrEMBL
Match: A0A5A7UXR8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00940 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.8e-20
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 25 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDD 84
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAG+KQDQKDD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGTKQDQKDD 60

Query: 85 SKHSPK 91
          SKHSPK
Sbjct: 61 SKHSPK 66

[Close]

BLAST of Lsi02G029310 vs. ExPASy TrEMBL
Match: E5GCB3 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.0e-20
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 25 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDD 84
          MAVKPTVALRAVLVGGIAAFAK+AGAMKAAGGAKLGAATAAMTAAATAALAG+KQDQKDD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKLAGAMKAAGGAKLGAATAAMTAAATAALAGTKQDQKDD 60

Query: 85 SKHSPK 91
          SKHSPK
Sbjct: 61 SKHSPK 66

[Close]

BLAST of Lsi02G029310 vs. ExPASy TrEMBL
Match: A0A6J1JXL7 (uncharacterized protein LOC111488760 OS=Cucurbita maxima OX=3661 GN=LOC111488760 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.9e-20
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 25 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDD 84
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGG KLGAATAAMTAAATAALAGSKQDQKDD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 85 SKHSPK 91
          SKH PK
Sbjct: 61 SKHPPK 66

[Close]

BLAST of Lsi02G029310 vs. ExPASy TrEMBL
Match: A0A6J1CPT9 (uncharacterized protein LOC111013620 OS=Momordica charantia OX=3673 GN=LOC111013620 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 25 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDD 84
          M VKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDD
Sbjct: 1  MEVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 85 SKHSPK 91
          SKH PK
Sbjct: 61 SKHPPK 66

[Close]

BLAST of Lsi02G029310 vs. ExPASy TrEMBL
Match: A0A6J1GSG6 (uncharacterized protein LOC111456569 OS=Cucurbita moschata OX=3662 GN=LOC111456569 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 25 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDD 84
          MA+KPTVALRAVLVGGIAAFAKIAGAMKAAGG KLGAATAAMTAAATAALAGSKQDQKDD
Sbjct: 1  MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 85 SKHSPK 91
          SKH PK
Sbjct: 61 SKHPPK 66

[Close]

BLAST of Lsi02G029310 vs. NCBI nr
Match: KAG7014012.1 (hypothetical protein SDJN02_24183, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.9 bits (307), Expect = 1.4e-24
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 6   CIPLRIVTVQTAD--KPKTKNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAAT 65
           C P +IVTVQTA+  KPK  NMA+KPTVALRAVLVGGIAAFAKIAGAMKAAGG KLGAAT
Sbjct: 90  CTP-KIVTVQTAENSKPKALNMAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAAT 149

Query: 66  AAMTAAATAALAGSKQDQKDDSKHSPK 91
           AAMTAAATAALAGSKQDQKDDSKH PK
Sbjct: 150 AAMTAAATAALAGSKQDQKDDSKHPPK 175

[Close]

BLAST of Lsi02G029310 vs. NCBI nr
Match: KAG6575471.1 (hypothetical protein SDJN03_26110, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.0 bits (284), Expect = 6.7e-22
Identity = 67/72 (93.06%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 19 KPKTKNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSK 78
          KPK  NMA+KPTVALRAVLVGGIAAFAKIAGAMKAAGG KLGAATAAMTAAATAALAGSK
Sbjct: 17 KPKALNMAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSK 76

Query: 79 QDQKDDSKHSPK 91
          QDQKDDSKH PK
Sbjct: 77 QDQKDDSKHPPK 88

[Close]

BLAST of Lsi02G029310 vs. NCBI nr
Match: KAG6593524.1 (hypothetical protein SDJN03_13000, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-20
Identity = 74/86 (86.05%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 7  IPLRIVTVQTADKPKTKNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAM 66
          IP    TVQTAD  K KNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAK+GAATAAM
Sbjct: 8  IPKIFPTVQTADTQK-KNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAM 67

Query: 67 TAAATAALA-GSKQDQKDDSK-HSPK 91
          TAAATAALA GSKQ+QKDDSK HSP+
Sbjct: 68 TAAATAALAGGSKQEQKDDSKQHSPQ 92

[Close]

BLAST of Lsi02G029310 vs. NCBI nr
Match: KAA0059427.1 (hypothetical protein E6C27_scaffold242G001540 [Cucumis melo var. makuwa] >TYK03898.1 hypothetical protein E5676_scaffold347G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 3.7e-20
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 25 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDD 84
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAG+KQDQKDD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGTKQDQKDD 60

Query: 85 SKHSPK 91
          SKHSPK
Sbjct: 61 SKHSPK 66

[Close]

BLAST of Lsi02G029310 vs. NCBI nr
Match: KAE8646513.1 (hypothetical protein Csa_016818 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 3.7e-20
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 25 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDD 84
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAG+KQDQKDD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGTKQDQKDD 60

Query: 85 SKHSPK 91
          SKHSPK
Sbjct: 61 SKHSPK 66

[Close]

BLAST of Lsi02G029310 vs. TAIR 10
Match: AT3G13845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 22 Blast hits to 22 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-14
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 25 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALA-GSKQDQKD 84
          M+VKPTVALR +LVGG+A FAK+A AMKAAGG KLGAA  AMT AATAA++ GSKQDQK 
Sbjct: 1  MSVKPTVALRGILVGGVAIFAKVAAAMKAAGGVKLGAAATAMTVAATAAVSGGSKQDQKQ 60

Query: 85 DSKHSP 90
          D+  +P
Sbjct: 61 DASKAP 66

The following BLAST results are available for this feature:

BLAST of Lsi02G029310 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G029310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UXR8	1.8e-20	98.48	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GCB3	3.0e-20	96.97	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A6J1JXL7	8.9e-20	96.97	uncharacterized protein LOC111488760 OS=Cucurbita maxima OX=3661 GN=LOC111488760...	[more]
A0A6J1CPT9	1.2e-19	96.97	uncharacterized protein LOC111013620 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1GSG6	1.2e-19	95.45	uncharacterized protein LOC111456569 OS=Cucurbita moschata OX=3662 GN=LOC1114565...	[more]

BLAST of Lsi02G029310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014012.1	1.4e-24	87.36	hypothetical protein SDJN02_24183, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6575471.1	6.7e-22	93.06	hypothetical protein SDJN03_26110, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6593524.1	1.7e-20	86.05	hypothetical protein SDJN03_13000, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0059427.1	3.7e-20	98.48	hypothetical protein E6C27_scaffold242G001540 [Cucumis melo var. makuwa] >TYK038...	[more]
KAE8646513.1	3.7e-20	98.48	hypothetical protein Csa_016818 [Cucumis sativus]	[more]

BLAST of Lsi02G029310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13845.1	1.4e-14	71.21	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36755	PROTEIN, PUTATIVE-RELATED	coord: 12..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G029310.1	Lsi02G029310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane