Lsi02G028740 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G028740
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	dormancy-associated protein homolog 4-like
Location	chr02: 34959244 .. 34959801 (+)
RNA-Seq Expression	Lsi02G028740
Synteny	Lsi02G028740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTACTTTTCTTCACAAGCTATGGGACGAAACGCTTGCTGGCCCTACGCCAGACACCGGCCTCGGAAAGCTTCGCAAGTACGATCCTGTTTCGGCCTCGGAATCGCCTCCGGTTACGATTTCCGGTGACATTCCTGTAACTCGGAGCATCACCATTCTCAGGAGGGCCAAGTCCGATTTCAGGAACTTCTCGGATGATCGTAATGGAAGGACCCTTGATTCCCTCGCTGGAATAACCTCGCCGCGGACGCCTCTAACTCGTGAGTTATCTATTGGATTGATCGTTTTTTTTAACTTGCAATTAAATATATGCGTATTCAGAGTTTTTTCATAGATTGCATTTGTAAACCATCTGCACAGATTGTTTGTTTCCTGGAAATTTGAAGAAATAACGGTTAACAATACCGACGGAATGAAAGTTATTCGGATATTTGACCAGTGTCTTATATGTGTAATTTTGTTTCTTCTGTTCCGTGCAGCGGGGACGCCTGAAGGTGATCTGAAGAGATTCCCATGGAAAAGATCGTCGGCTGAATCATTGGAACAAGACGATTAG

mRNA sequence

ATGACTACTTTTCTTCACAAGCTATGGGACGAAACGCTTGCTGGCCCTACGCCAGACACCGGCCTCGGAAAGCTTCGCAAGTACGATCCTGTTTCGGCCTCGGAATCGCCTCCGGTTACGATTTCCGGTGACATTCCTGTAACTCGGAGCATCACCATTCTCAGGAGGGCCAAGTCCGATTTCAGGAACTTCTCGGATGATCGTAATGGAAGGACCCTTGATTCCCTCGCTGGAATAACCTCGCCGCGGACGCCTCTAACTCCGGGGACGCCTGAAGGTGATCTGAAGAGATTCCCATGGAAAAGATCGTCGGCTGAATCATTGGAACAAGACGATTAG

Coding sequence (CDS)

ATGACTACTTTTCTTCACAAGCTATGGGACGAAACGCTTGCTGGCCCTACGCCAGACACCGGCCTCGGAAAGCTTCGCAAGTACGATCCTGTTTCGGCCTCGGAATCGCCTCCGGTTACGATTTCCGGTGACATTCCTGTAACTCGGAGCATCACCATTCTCAGGAGGGCCAAGTCCGATTTCAGGAACTTCTCGGATGATCGTAATGGAAGGACCCTTGATTCCCTCGCTGGAATAACCTCGCCGCGGACGCCTCTAACTCCGGGGACGCCTGAAGGTGATCTGAAGAGATTCCCATGGAAAAGATCGTCGGCTGAATCATTGGAACAAGACGATTAG

Protein sequence

MTTFLHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVTISGDIPVTRSITILRRAKSDFRNFSDDRNGRTLDSLAGITSPRTPLTPGTPEGDLKRFPWKRSSAESLEQDD

Homology

[Close]

BLAST of Lsi02G028740 vs. ExPASy Swiss-Prot
Match: F4HV65 (Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g54070 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.9e-15
Identity = 46/90 (51.11%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 4  FLHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVTISGDIPVTRSITILRRAKS--DF 63
          FLHKLWDET+AGPTPD GLGKLRK+D +S   S P ++S D  VTRSI + +   +    
Sbjct: 3  FLHKLWDETVAGPTPDNGLGKLRKHDSLSTVRSSPPSLSSD-QVTRSIMVTKGNNNVRGL 62

Query: 64 RNFSDDRNGRTLDSLAGITSPRTPLTPGTP 92
          R    D +  T  S    ++P TPLTPGTP
Sbjct: 63 RKLKMDPDSPTCSS----SNPGTPLTPGTP 87

[Close]

BLAST of Lsi02G028740 vs. ExPASy Swiss-Prot
Match: B9DGG8 (Dormancy-associated protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRM1 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.8e-04
Identity = 29/90 (32.22%), Postives = 41/90 (45.56%), Query Frame = 0


Query: 5  LHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVTISGDIPVTRSITILRRAKSDFRNF 64
          L KLWD+ +AGP PD GLG+LRK        + P+ I      + S  ++ R+       
Sbjct: 4  LEKLWDDVVAGPQPDRGLGRLRKI------TTQPINIRDIGEGSSSKVVMHRS------- 63

Query: 65 SDDRNGRTLDSLAGITSPRTPLTPGTPEGD 95
                 T+ +     +P TP TP TP  D
Sbjct: 64 ------LTMPAAVSPGTPTTPTTPTTPRKD 74

[Close]

BLAST of Lsi02G028740 vs. ExPASy TrEMBL
Match: A0A5A7UTX0 (Dormancy-associated protein-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001500 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 89/114 (78.07%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 1   MTTFLHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVTISGDIPVTRSITILRRAKSD 60
           MTTFLHK+WDETLAGPTPD GLGKLRKYDPVSASESPPV I+GD+PVTRSITILRR   D
Sbjct: 1   MTTFLHKIWDETLAGPTPDNGLGKLRKYDPVSASESPPVKIAGDVPVTRSITILRRRNYD 60

Query: 61  FRNFSDDRNGRTLDSLAGITSPRTPLTPGT--PEGDLKRFPWKRSSAESLEQDD 113
             NFSDDR+GR +D      SPRTPLTPGT  P+GDLKRFPWKR SAES +QDD
Sbjct: 61  LGNFSDDRDGRMID------SPRTPLTPGTPDPDGDLKRFPWKRLSAESFDQDD 108

[Close]

BLAST of Lsi02G028740 vs. ExPASy TrEMBL
Match: A0A0A0K9D5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448700 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 6.2e-39
Identity = 86/114 (75.44%), Postives = 93/114 (81.58%), Query Frame = 0


Query: 1   MTTFLHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVTISGDIPVTRSITILRRAKSD 60
           M++FLHKLWDETLAGPTPD GLGKLRKYDPVSASES  V ISGD+PVTRSITILRR   D
Sbjct: 1   MSSFLHKLWDETLAGPTPDNGLGKLRKYDPVSASESSSVKISGDVPVTRSITILRRRNYD 60

Query: 61  FRNFSDDRNGRTLDSLAGITSPRTPLTPGTP--EGDLKRFPWKRSSAESLEQDD 113
           FRN +DDR+GR +D      SPRTPLTPGTP  +GDLKR PWKR SAES E DD
Sbjct: 61  FRNLADDRDGRMID------SPRTPLTPGTPDLDGDLKRIPWKRLSAESFEHDD 108

[Close]

BLAST of Lsi02G028740 vs. ExPASy TrEMBL
Match: A0A6J1DF61 (dormancy-associated protein homolog 4-like OS=Momordica charantia OX=3673 GN=LOC111019516 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.4e-38
Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 1   MTTFLHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVTISGDIPVTRSITILRRAKSD 60
           MT+FLHKLWDET+AGPTPDTGLGKLRKYD +S SE PP+ IS +IPVTRSITILRR  SD
Sbjct: 1   MTSFLHKLWDETVAGPTPDTGLGKLRKYDSISPSELPPIKISDEIPVTRSITILRR-NSD 60

Query: 61  FRNFSDDRNGRTLDSLAGITSPRTPLTPGTPEGDLKRFPWKRSSAESLEQD 112
           FR  S+DR+ R  DS+AGI+SPRTP+TPGTPE DLKRF W++SSAES E D
Sbjct: 61  FRTSSEDRHRRMPDSIAGISSPRTPVTPGTPEFDLKRFSWRKSSAESSEHD 110

[Close]

BLAST of Lsi02G028740 vs. ExPASy TrEMBL
Match: A0A6J1KIP1 (dormancy-associated protein homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111494315 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 7.6e-37
Identity = 83/111 (74.77%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 1   MTTFLHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVTISGDIPVTRSITILRRAKSD 60
           M TFLHKLWDETLAGPTPDTGLGKLRKYD +SA+ESPPV IS DIPVTRSITIL R+ SD
Sbjct: 1   MNTFLHKLWDETLAGPTPDTGLGKLRKYDSLSAAESPPVKISKDIPVTRSITIL-RSNSD 60

Query: 61  FRNFSDDRNGRTLDSLAGITSPRTPLTPGTPEGDLKRFPWKRSSAESLEQD 112
           FR+ SD R+ R +D LAG +SP+TP TPGTPEG+ KR  W++SSA SLEQD
Sbjct: 61  FRSNSDYRSRRMIDLLAGESSPQTPPTPGTPEGNPKRLAWRKSSAVSLEQD 110

[Close]

BLAST of Lsi02G028740 vs. ExPASy TrEMBL
Match: A0A6J1HKD6 (dormancy-associated protein homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111464350 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.5e-34
Identity = 79/111 (71.17%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MTTFLHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVTISGDIPVTRSITILRRAKSD 60
           M TFLHKLWDETLAGPTPDTGLGKLRKYD +S +ESPPV IS DIPVTRSITIL      
Sbjct: 1   MDTFLHKLWDETLAGPTPDTGLGKLRKYDSLSVAESPPVKISKDIPVTRSITIL------ 60

Query: 61  FRNFSDDRNGRTLDSLAGITSPRTPLTPGTPEGDLKRFPWKRSSAESLEQD 112
            R+ SDDR+ R +D LAG +SPRTP TPGTPEG  KR  W++SSA S+EQD
Sbjct: 61  -RSNSDDRSRRMIDLLAGESSPRTPSTPGTPEGHPKRLAWRKSSAVSMEQD 104

[Close]

BLAST of Lsi02G028740 vs. NCBI nr
Match: XP_038896212.1 (dormancy-associated protein homolog 4-like [Benincasa hispida])

HSP 1 Score: 201.8 bits (512), Expect = 3.0e-48
Identity = 101/112 (90.18%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MTTFLHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVTISGDIPVTRSITILRRAKSD 60
           MTTFLHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPV ISGDIPVTRSITIL R  S 
Sbjct: 1   MTTFLHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVKISGDIPVTRSITILTRGNSG 60

Query: 61  FRNFSDDRNGRTLDSLAGITSPRTPLTPGTPEGDLKRFPWKRSSAESLEQDD 113
           FRNF DDRNGR +DS  GITSPRTPLTPGTPE DLKRFPWKRSSAESLEQDD
Sbjct: 61  FRNFLDDRNGRMIDS--GITSPRTPLTPGTPECDLKRFPWKRSSAESLEQDD 110

[Close]

BLAST of Lsi02G028740 vs. NCBI nr
Match: KAA0059373.1 (dormancy-associated protein-like protein 4 isoform X2 [Cucumis melo var. makuwa] >TYK03953.1 dormancy-associated protein-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 178.7 bits (452), Expect = 2.8e-41
Identity = 89/114 (78.07%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 1   MTTFLHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVTISGDIPVTRSITILRRAKSD 60
           MTTFLHK+WDETLAGPTPD GLGKLRKYDPVSASESPPV I+GD+PVTRSITILRR   D
Sbjct: 1   MTTFLHKIWDETLAGPTPDNGLGKLRKYDPVSASESPPVKIAGDVPVTRSITILRRRNYD 60

Query: 61  FRNFSDDRNGRTLDSLAGITSPRTPLTPGT--PEGDLKRFPWKRSSAESLEQDD 113
             NFSDDR+GR +D      SPRTPLTPGT  P+GDLKRFPWKR SAES +QDD
Sbjct: 61  LGNFSDDRDGRMID------SPRTPLTPGTPDPDGDLKRFPWKRLSAESFDQDD 108

[Close]

BLAST of Lsi02G028740 vs. NCBI nr
Match: KGN45459.1 (hypothetical protein Csa_016028 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-38
Identity = 86/114 (75.44%), Postives = 93/114 (81.58%), Query Frame = 0


Query: 1   MTTFLHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVTISGDIPVTRSITILRRAKSD 60
           M++FLHKLWDETLAGPTPD GLGKLRKYDPVSASES  V ISGD+PVTRSITILRR   D
Sbjct: 1   MSSFLHKLWDETLAGPTPDNGLGKLRKYDPVSASESSSVKISGDVPVTRSITILRRRNYD 60

Query: 61  FRNFSDDRNGRTLDSLAGITSPRTPLTPGTP--EGDLKRFPWKRSSAESLEQDD 113
           FRN +DDR+GR +D      SPRTPLTPGTP  +GDLKR PWKR SAES E DD
Sbjct: 61  FRNLADDRDGRMID------SPRTPLTPGTPDLDGDLKRIPWKRLSAESFEHDD 108

[Close]

BLAST of Lsi02G028740 vs. NCBI nr
Match: XP_022151606.1 (dormancy-associated protein homolog 4-like [Momordica charantia])

HSP 1 Score: 168.7 bits (426), Expect = 2.9e-38
Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 1   MTTFLHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVTISGDIPVTRSITILRRAKSD 60
           MT+FLHKLWDET+AGPTPDTGLGKLRKYD +S SE PP+ IS +IPVTRSITILRR  SD
Sbjct: 1   MTSFLHKLWDETVAGPTPDTGLGKLRKYDSISPSELPPIKISDEIPVTRSITILRR-NSD 60

Query: 61  FRNFSDDRNGRTLDSLAGITSPRTPLTPGTPEGDLKRFPWKRSSAESLEQD 112
           FR  S+DR+ R  DS+AGI+SPRTP+TPGTPE DLKRF W++SSAES E D
Sbjct: 61  FRTSSEDRHRRMPDSIAGISSPRTPVTPGTPEFDLKRFSWRKSSAESSEHD 110

[Close]

BLAST of Lsi02G028740 vs. NCBI nr
Match: XP_023514880.1 (dormancy-associated protein homolog 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.3 bits (425), Expect = 3.7e-38
Identity = 85/111 (76.58%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 1   MTTFLHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVTISGDIPVTRSITILRRAKSD 60
           M TFLHKLWDETLAGPTPDTGLGKLRKYD +SA+ESPPV IS DIPVTRSITIL R+ SD
Sbjct: 1   MNTFLHKLWDETLAGPTPDTGLGKLRKYDSLSAAESPPVKISKDIPVTRSITIL-RSNSD 60

Query: 61  FRNFSDDRNGRTLDSLAGITSPRTPLTPGTPEGDLKRFPWKRSSAESLEQD 112
           FR+ SDDR+ R +D LAG +SPRTP TPGTPEG+ KR  W++SSA SLEQD
Sbjct: 61  FRSNSDDRSRRMIDLLAGESSPRTPSTPGTPEGNPKRLAWRKSSAVSLEQD 110

[Close]

BLAST of Lsi02G028740 vs. TAIR 10
Match: AT1G54070.1 (Dormancy/auxin associated family protein )

HSP 1 Score: 81.3 bits (199), Expect = 5.6e-16
Identity = 46/90 (51.11%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 4  FLHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVTISGDIPVTRSITILRRAKS--DF 63
          FLHKLWDET+AGPTPD GLGKLRK+D +S   S P ++S D  VTRSI + +   +    
Sbjct: 3  FLHKLWDETVAGPTPDNGLGKLRKHDSLSTVRSSPPSLSSD-QVTRSIMVTKGNNNVRGL 62

Query: 64 RNFSDDRNGRTLDSLAGITSPRTPLTPGTP 92
          R    D +  T  S    ++P TPLTPGTP
Sbjct: 63 RKLKMDPDSPTCSS----SNPGTPLTPGTP 87

[Close]

BLAST of Lsi02G028740 vs. TAIR 10
Match: AT1G28330.1 (dormancy-associated protein-like 1 )

HSP 1 Score: 45.4 bits (106), Expect = 3.4e-05
Identity = 29/90 (32.22%), Postives = 41/90 (45.56%), Query Frame = 0


Query: 5  LHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVTISGDIPVTRSITILRRAKSDFRNF 64
          L KLWD+ +AGP PD GLG+LRK        + P+ I      + S  ++ R+       
Sbjct: 4  LEKLWDDVVAGPQPDRGLGRLRKI------TTQPINIRDIGEGSSSKVVMHRS------- 63

Query: 65 SDDRNGRTLDSLAGITSPRTPLTPGTPEGD 95
                 T+ +     +P TP TP TP  D
Sbjct: 64 ------LTMPAAVSPGTPTTPTTPTTPRKD 74

[Close]

BLAST of Lsi02G028740 vs. TAIR 10
Match: AT1G28330.3 (dormancy-associated protein-like 1 )

HSP 1 Score: 45.4 bits (106), Expect = 3.4e-05
Identity = 29/90 (32.22%), Postives = 41/90 (45.56%), Query Frame = 0


Query: 5  LHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVTISGDIPVTRSITILRRAKSDFRNF 64
          L KLWD+ +AGP PD GLG+LRK        + P+ I      + S  ++ R+       
Sbjct: 4  LEKLWDDVVAGPQPDRGLGRLRKI------TTQPINIRDIGEGSSSKVVMHRS------- 63

Query: 65 SDDRNGRTLDSLAGITSPRTPLTPGTPEGD 95
                 T+ +     +P TP TP TP  D
Sbjct: 64 ------LTMPAAVSPGTPTTPTTPTTPRKD 74

[Close]

BLAST of Lsi02G028740 vs. TAIR 10
Match: AT1G28330.2 (dormancy-associated protein-like 1 )

HSP 1 Score: 45.4 bits (106), Expect = 3.4e-05
Identity = 29/90 (32.22%), Postives = 41/90 (45.56%), Query Frame = 0


Query: 5  LHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVTISGDIPVTRSITILRRAKSDFRNF 64
          L KLWD+ +AGP PD GLG+LRK        + P+ I      + S  ++ R+       
Sbjct: 4  LEKLWDDVVAGPQPDRGLGRLRKI------TTQPINIRDIGEGSSSKVVMHRS------- 63

Query: 65 SDDRNGRTLDSLAGITSPRTPLTPGTPEGD 95
                 T+ +     +P TP TP TP  D
Sbjct: 64 ------LTMPAAVSPGTPTTPTTPTTPRKD 74

[Close]

BLAST of Lsi02G028740 vs. TAIR 10
Match: AT1G28330.4 (dormancy-associated protein-like 1 )

HSP 1 Score: 45.4 bits (106), Expect = 3.4e-05
Identity = 29/90 (32.22%), Postives = 41/90 (45.56%), Query Frame = 0


Query: 5  LHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVTISGDIPVTRSITILRRAKSDFRNF 64
          L KLWD+ +AGP PD GLG+LRK        + P+ I      + S  ++ R+       
Sbjct: 4  LEKLWDDVVAGPQPDRGLGRLRKI------TTQPINIRDIGEGSSSKVVMHRS------- 63

Query: 65 SDDRNGRTLDSLAGITSPRTPLTPGTPEGD 95
                 T+ +     +P TP TP TP  D
Sbjct: 64 ------LTMPAAVSPGTPTTPTTPTTPRKD 74

The following BLAST results are available for this feature:

BLAST of Lsi02G028740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HV65	7.9e-15	51.11	Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g540...	[more]
B9DGG8	4.8e-04	32.22	Dormancy-associated protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRM1 PE=1 SV=1	[more]

BLAST of Lsi02G028740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UTX0	1.3e-41	78.07	Dormancy-associated protein-like protein 4 isoform X2 OS=Cucumis melo var. makuw...	[more]
A0A0A0K9D5	6.2e-39	75.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448700 PE=3 SV=1	[more]
A0A6J1DF61	1.4e-38	74.77	dormancy-associated protein homolog 4-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1KIP1	7.6e-37	74.77	dormancy-associated protein homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1HKD6	3.5e-34	71.17	dormancy-associated protein homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of Lsi02G028740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896212.1	3.0e-48	90.18	dormancy-associated protein homolog 4-like [Benincasa hispida]	[more]
KAA0059373.1	2.8e-41	78.07	dormancy-associated protein-like protein 4 isoform X2 [Cucumis melo var. makuwa]...	[more]
KGN45459.1	1.3e-38	75.44	hypothetical protein Csa_016028 [Cucumis sativus]	[more]
XP_022151606.1	2.9e-38	74.77	dormancy-associated protein homolog 4-like [Momordica charantia]	[more]
XP_023514880.1	3.7e-38	76.58	dormancy-associated protein homolog 4-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi02G028740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54070.1	5.6e-16	51.11	Dormancy/auxin associated family protein	[more]
AT1G28330.1	3.4e-05	32.22	dormancy-associated protein-like 1	[more]
AT1G28330.3	3.4e-05	32.22	dormancy-associated protein-like 1	[more]
AT1G28330.2	3.4e-05	32.22	dormancy-associated protein-like 1	[more]
AT1G28330.4	3.4e-05	32.22	dormancy-associated protein-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008406	Dormancy/auxin associated protein	PFAM	PF05564	Auxin_repressed	coord: 8..93 e-value: 9.0E-8 score: 32.8
IPR008406	Dormancy/auxin associated protein	PANTHER	PTHR33565	DORMANCY-ASSOCIATED PROTEIN 1	coord: 3..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..40
None	No IPR available	PANTHER	PTHR33565:SF26	DORMANCY-ASSOCIATED PROTEIN HOMOLOG 4	coord: 3..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G028740.1	Lsi02G028740.1	mRNA