Lsi02G028590 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G028590
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like
Location	chr02: 34808977 .. 34809699 (-)
RNA-Seq Expression	Lsi02G028590
Synteny	Lsi02G028590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAAACTAAAAATGCATTCTCCTTCTTCAGCACTTCACCTTCTATGTCTCCCTTCCAAATTATAAATATTGTGTATGTGTGATCCTTCCATTCAAACCCAAAAATAGAAAAGGAAAACTTCCGCTTTCTCTCTCAACATTCTTCTTCTTTAAGACATGGCTAAAGTTACTGGAAATGGTCTGTACTTTATAAGGTCTATCATTCTCGTCCTGGTTTTTATATATTTCTCACTACCATTCTACGTGCATGTTTCTTTCGTGTTCTTGACTACTTTAGCAATGTAATAGCAGGCGACTGAGCTCTTCAGTTGCAACCGAGCAACTTAACACACAAACAACTGCATCAATGGTGGCGAGGAAGGTGAAGGCAGCTGTGGAAACAAACGGTTATGATAATGAGGCAGTTAAACAGAAGGAGACATTTTGGATGAAAGATCCCAAGAGTGGAAACTGGATTCCTGAGAGCCACTTTGAAGAGATTGATGTGGTGGAATTGAGGGAGAAACTGCTACCTAAACCTAAACCTAAGAAGCTGCTCTAAAACAGCAAGTGAAAAGCTTCATTTATGTGCAAGAACAATATTTCCATCTGTATCCATCTTATCCATGCTTTACTAAATAACACTTGTTGCAAAAACTATTCTGCACTACTTTTCTCTCTCTCTCTCTCTCTCTCTCTTTAATCTGTCACTTCTATCAGTTTCAAGTCTCAAATGAATCCTCT

mRNA sequence

TACAAACTAAAAATGCATTCTCCTTCTTCAGCACTTCACCTTCTATGTCTCCCTTCCAAATTATAAATATTGTGTATGTGTGATCCTTCCATTCAAACCCAAAAATAGAAAAGGAAAACTTCCGCTTTCTCTCTCAACATTCTTCTTCTTTAAGACATGGCTAAAGTTACTGGAAATGGTCTGTACTTTATAAGGCGACTGAGCTCTTCAGTTGCAACCGAGCAACTTAACACACAAACAACTGCATCAATGGTGGCGAGGAAGGTGAAGGCAGCTGTGGAAACAAACGGTTATGATAATGAGGCAGTTAAACAGAAGGAGACATTTTGGATGAAAGATCCCAAGAGTGGAAACTGGATTCCTGAGAGCCACTTTGAAGAGATTGATGTGGTGGAATTGAGGGAGAAACTGCTACCTAAACCTAAACCTAAGAAGCTGCTCTAAAACAGCAAGTGAAAAGCTTCATTTATGTGCAAGAACAATATTTCCATCTGTATCCATCTTATCCATGCTTTACTAAATAACACTTGTTGCAAAAACTATTCTGCACTACTTTTCTCTCTCTCTCTCTCTCTCTCTCTTTAATCTGTCACTTCTATCAGTTTCAAGTCTCAAATGAATCCTCT

Coding sequence (CDS)

ATGGCTAAAGTTACTGGAAATGGTCTGTACTTTATAAGGCGACTGAGCTCTTCAGTTGCAACCGAGCAACTTAACACACAAACAACTGCATCAATGGTGGCGAGGAAGGTGAAGGCAGCTGTGGAAACAAACGGTTATGATAATGAGGCAGTTAAACAGAAGGAGACATTTTGGATGAAAGATCCCAAGAGTGGAAACTGGATTCCTGAGAGCCACTTTGAAGAGATTGATGTGGTGGAATTGAGGGAGAAACTGCTACCTAAACCTAAACCTAAGAAGCTGCTCTAA

Protein sequence

MAKVTGNGLYFIRRLSSSVATEQLNTQTTASMVARKVKAAVETNGYDNEAVKQKETFWMKDPKSGNWIPESHFEEIDVVELREKLLPKPKPKKLL

Homology

[Close]

BLAST of Lsi02G028590 vs. ExPASy TrEMBL
Match: A0A0A0K7L4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448050 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.0e-35
Identity = 77/90 (85.56%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1  MAKVTGNGLYFIRRLSSSVATEQLNTQTTASMVARKVKAAVETNGYDNEAVKQKETFWMK 60
          MAKVTGN LYFIRR+SSSVA+EQL  QTTASMV RKVKAAVET GYDNE V+QK+TFWMK
Sbjct: 1  MAKVTGNSLYFIRRMSSSVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMK 60

Query: 61 DPKSGNWIPESHFEEIDVVELREKLLPKPK 91
          DPKSGNWIPE+HFEE+DVVELREKLL KPK
Sbjct: 61 DPKSGNWIPENHFEEMDVVELREKLLAKPK 90

[Close]

BLAST of Lsi02G028590 vs. ExPASy TrEMBL
Match: A0A5D3BWU2 (Putative Senescence-associated protein 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001640 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.8e-26
Identity = 63/76 (82.89%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 15 LSSSVATEQLNTQTTASMVARKVKAAVETNGYDNEAVKQKETFWMKDPKSGNWIPESHFE 74
          +SSS+A+EQL  QTTASMV RKVKAAVET+ YDNE V+QK+TFWMKDPKSGNWIPE+HFE
Sbjct: 1  MSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMKDPKSGNWIPENHFE 60

Query: 75 EIDVVELREKLLPKPK 91
          EIDVVELREKLL KPK
Sbjct: 61 EIDVVELREKLLAKPK 76

[Close]

BLAST of Lsi02G028590 vs. ExPASy TrEMBL
Match: A0A7N2LLH6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 49/90 (54.44%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 1  MAKVTGNGLYFIRRLSSSVATEQLNTQTTASMVARKVKAAVETNGYDNEAVKQKETFWMK 60
          MA+V  + L  +RR + SVA E    Q   ++    VK A E+ G    A +QKE FWM+
Sbjct: 1  MARVPIDNLLLLRR-AYSVAVENARVQPVMTV----VKKAAESGG--TVAEEQKEIFWMR 60

Query: 61 DPKSGNWIPESHFEEIDVVELREKLLPKPK 91
          DPKSGNWIPESHF EI+V ELREKLLPK K
Sbjct: 61 DPKSGNWIPESHFGEINVAELREKLLPKKK 83

[Close]

BLAST of Lsi02G028590 vs. ExPASy TrEMBL
Match: A0A6A1VZA4 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G026162 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.5e-12
Identity = 50/90 (55.56%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1  MAKVTGNGLYFIRRLSSSVATEQLNTQTTASMVARKVKAAVETNGYDNEAVKQKETFWMK 60
          MAKV  N L  + R S SVA   L        V    + A E++G   EA +QKE FWMK
Sbjct: 1  MAKVFINTLLHLSRRSFSVAV--LENIRRVQPVTTATRKAAESSG--AEATEQKENFWMK 60

Query: 61 DPKSGNWIPESHFEEIDVVELREKLLPKPK 91
          D KSGNWIPESHF EIDVV+LREKLLP+ K
Sbjct: 61 DLKSGNWIPESHFGEIDVVDLREKLLPRQK 86

[Close]

BLAST of Lsi02G028590 vs. ExPASy TrEMBL
Match: F6HXN7 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g00410 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.2e-12
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 1  MAKV-TGNGLYFIRRLSSSVATEQLNTQTTASMVARKVKAAVETNGYDNEAVKQKETFWM 60
          MAKV   + L F  R S + A E    Q  AS V + + +   ++     A +QKE+FWM
Sbjct: 1  MAKVPIKSFLLFCNRRSYAAAAETAVVQPVASAVRKAMDSTTTSDSKTEAAAQQKESFWM 60

Query: 61 KDPKSGNWIPESHFEEIDVVELREKLLPKPKP 92
          KDPK+GNWIPE+HF++ DVV LREK LP+  P
Sbjct: 61 KDPKTGNWIPEAHFDDTDVVALREKFLPRGPP 92

[Close]

BLAST of Lsi02G028590 vs. NCBI nr
Match: KAE8646489.1 (hypothetical protein Csa_015817 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 7.3e-27
Identity = 64/76 (84.21%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 15 LSSSVATEQLNTQTTASMVARKVKAAVETNGYDNEAVKQKETFWMKDPKSGNWIPESHFE 74
          +SSSVA+EQL  QTTASMV RKVKAAVET GYDNE V+QK+TFWMKDPKSGNWIPE+HFE
Sbjct: 1  MSSSVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMKDPKSGNWIPENHFE 60

Query: 75 EIDVVELREKLLPKPK 91
          E+DVVELREKLL KPK
Sbjct: 61 EMDVVELREKLLAKPK 76

[Close]

BLAST of Lsi02G028590 vs. NCBI nr
Match: KAA0059359.1 (putative Senescence-associated protein 21 [Cucumis melo var. makuwa] >TYK03967.1 putative Senescence-associated protein 21 [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 3.6e-26
Identity = 63/76 (82.89%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 15 LSSSVATEQLNTQTTASMVARKVKAAVETNGYDNEAVKQKETFWMKDPKSGNWIPESHFE 74
          +SSS+A+EQL  QTTASMV RKVKAAVET+ YDNE V+QK+TFWMKDPKSGNWIPE+HFE
Sbjct: 1  MSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMKDPKSGNWIPENHFE 60

Query: 75 EIDVVELREKLLPKPK 91
          EIDVVELREKLL KPK
Sbjct: 61 EIDVVELREKLLAKPK 76

[Close]

BLAST of Lsi02G028590 vs. NCBI nr
Match: KAG6575415.1 (hypothetical protein SDJN03_26054, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 1  MAKVTGNGLYFIRRLSSSVATEQLNTQTTASMVARKVKAAVETNGYDN-EAVKQKETFWM 60
          MAK+TGNG+YFIRRLSS VA+EQL  + TA M  + V A VET+G D+ +AV+QK  FWM
Sbjct: 1  MAKLTGNGVYFIRRLSSLVASEQLKARATAPMTVKNVIATVETSGSDDIKAVEQKNIFWM 60

Query: 61 KDPKSGNWIPESHFEEIDVVELREKLLPKPK 91
          KDPKSGNWIPE+HF EIDVVELREKLL K K
Sbjct: 61 KDPKSGNWIPENHFGEIDVVELREKLLSKTK 91

[Close]

BLAST of Lsi02G028590 vs. NCBI nr
Match: XP_022843012.1 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea var. sylvestris] >CAA3012453.1 SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea subsp. europaea])

HSP 1 Score: 84.7 bits (208), Expect = 4.6e-13
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 1  MAKVTGNGLYFIRRLSSSVATEQLNTQTTASMVARKVKAAVETNGYDNEAVKQKETFWMK 60
          MAK + N L  + R  S+VA E   TQTT S V ++V  +V           +K+ FWMK
Sbjct: 1  MAKFSLNSLLLLSRRESTVAAEITKTQTTTSSVIKEVADSV-----------RKDVFWMK 60

Query: 61 DPKSGNWIPESHFEEIDVVELREKLLPK 89
          DPK+GNWIPE+HFE+IDV ELREKLL K
Sbjct: 61 DPKTGNWIPETHFEQIDVAELREKLLSK 77

[Close]

BLAST of Lsi02G028590 vs. NCBI nr
Match: XP_022853417.1 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like isoform X1 [Olea europaea var. sylvestris] >CAA3008674.1 SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea subsp. europaea])

HSP 1 Score: 84.0 bits (206), Expect = 7.9e-13
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 1  MAKVTGNGLYFIRRLSSSVATEQLNTQTTASMVARKVKAAVETNGYDNEAVKQKETFWMK 60
          MAK   N L  + R +S++A E   TQT  S V +KV  +V           +KE FWM+
Sbjct: 1  MAKFFLNSLLLLSRRASTIAAESTKTQTVTSSVNKKVADSV-----------RKEVFWMR 60

Query: 61 DPKSGNWIPESHFEEIDVVELREKLLPK 89
          DPK+GNWIPE+HFE+IDV ELREKLL K
Sbjct: 61 DPKTGNWIPETHFEQIDVAELREKLLSK 77

The following BLAST results are available for this feature:

BLAST of Lsi02G028590 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G028590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7L4	6.0e-35	85.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448050 PE=4 SV=1	[more]
A0A5D3BWU2	1.8e-26	82.89	Putative Senescence-associated protein 21 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A7N2LLH6	1.9e-12	54.44	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6A1VZA4	2.5e-12	55.56	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G026162 PE=4 SV=1	[more]
F6HXN7	7.2e-12	46.74	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g00410 PE=4 SV=...	[more]

BLAST of Lsi02G028590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646489.1	7.3e-27	84.21	hypothetical protein Csa_015817 [Cucumis sativus]	[more]
KAA0059359.1	3.6e-26	82.89	putative Senescence-associated protein 21 [Cucumis melo var. makuwa] >TYK03967.1...	[more]
KAG6575415.1	1.2e-24	70.33	hypothetical protein SDJN03_26054, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022843012.1	4.6e-13	52.27	protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea var. sy...	[more]
XP_022853417.1	7.9e-13	51.14	protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like isoform X1 [Olea europ...	[more]

BLAST of Lsi02G028590 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004926	Late embryogenesis abundant protein, LEA_3 subgroup	PFAM	PF03242	LEA_3	coord: 18..86 e-value: 1.2E-13 score: 51.6
IPR004926	Late embryogenesis abundant protein, LEA_3 subgroup	PANTHER	PTHR33509	LATE EMBRYOGENIS ABUNDANT PROTEIN 2-RELATED	coord: 9..89
None	No IPR available	PANTHER	PTHR33509:SF21	OS02G0564600 PROTEIN	coord: 9..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G028590.1	Lsi02G028590.1	mRNA