Lsi02G028450 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G028450
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	WD repeat-containing protein 49 isoform 2
Location	chr02: 34629418 .. 34630564 (+)
RNA-Seq Expression	Lsi02G028450
Synteny	Lsi02G028450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTAGACAGGACTACTTTGATGTATCAGTACATTGATAGGATGTGCATCTGCGCCTTGAGTTTAGAATACAAATGATGAGAAAGATCCAATTGTCACAACCTCATTCCTCTGTCTGTTTGATGTTGTTTTCGGAAAATGAAAATGAATTATTTCATGATCAAACCTTAACATGGATAGTGCCTATTGACTATGTTTTGGAAATTAGAATTTAGAATGGTAGTTCTACTAAGCCACTAAAAATTTCCTTCTTGTTTCAATGCTGCTAACATTTAACATTTCACAAATCAGGCATGTCTTTACTGGCTGGATTTGCAAATTCCGTTAGTCCATTGTACTTTGAGGTGAAACAACTTAAGGAAGTGATGTCAACTGAACATCCTTGTGACTTGGCATATGAATTCGGTGATGGGCTGTTTGATATTCATGAATACCCTGAAGGCTTTCCGGCTCCAGGTATGATGTTAAAATATGTGTCTTTATTCATATTGTTGAAACCTCATCAAATGTATTGGTTATTCCACGATACTATTTCAACCCAATCCTATGTTATCTATGCAAGTTAGTTGTTACCAGAATATTTTTCGTAAAAGAAATGATAACTAAAAGAACTGTTTGCTTTGCATGCCCCTGTTTTCTTGGGGCTCGCTAGGAAGTTTCAAGGTCTTTGCAATAAAAGCTCCACTATGTATATGAAGTCTTTAGTGTGTTTCTTGAAGGAGAGTTCCAAGTATTTACCATTAGGGACAAAATTAGAGACTTGAGAGATGTTTTGCATCTTTGGAGTAACACTCACAAATTTGAGATGGTGAAGGACATTTTCTTTATTTGAGGTTTTAAATACTCTTGTTATGTATGTTTCAGAATTCACACTGAATTGAAATGGTAGCTCTCGCGCAGCATGCTTCTCCTTGGTTTTCCAAGTTTTTAATACTTTGTATTTATCATTATTTTTTCATTTTGCAGCCAAGCATCTATATCCTTTCAACGACCAGGTTGTAGTATATGTTCGATATTTGGGACCTGGAGTGTTAGTTGGCCAGGCATGGCAAGAAGGAAAAGCTCTGGAGCAGGTGCCGCGGAAATTATGTGCTGAAATATTGATGATCAAAGACTACAGTCAACGACCACTCCAAAAGCAGTAG

mRNA sequence

ATGGGCATGTCTTTACTGGCTGGATTTGCAAATTCCGTTAGTCCATTGTACTTTGAGGTGAAACAACTTAAGGAAGTGATGTCAACTGAACATCCTTGTGACTTGGCATATGAATTCGGTGATGGGCTGTTTGATATTCATGAATACCCTGAAGGCTTTCCGGCTCCAGGTATGATGTTAAAATATGTGTCTTTATTCATATTGTTGAAACCTCATCAAATGTATTGGTTATTCCACGATACTATTTCAACCCAATCCTATGTTATCTATGCAAAACTGTTTGCTTTGCATGCCCCTGTTTTCTTGGGGCTCGCTAGGAAGTTTCAAGGTCTTTGCAATAAAAGCTCCACTATTGTGTTTCTTGAAGGAGAGTTCCAAGTATTTACCATTAGGGACAAAATTAGAGACTTGAGAGATGTTTTGCATCTTTGGAGTAACACTCACAAATTTGAGATGCTCTCGCGCAGCATGCTTCTCCTTGGTTTTCCAACCAAGCATCTATATCCTTTCAACGACCAGGTTGTAGTATATGTTCGATATTTGGGACCTGGAGTGTTAGTTGGCCAGGCATGGCAAGAAGGAAAAGCTCTGGAGCAGGTGCCGCGGAAATTATGTGCTGAAATATTGATGATCAAAGACTACAGTCAACGACCACTCCAAAAGCAGTAG

Coding sequence (CDS)

ATGGGCATGTCTTTACTGGCTGGATTTGCAAATTCCGTTAGTCCATTGTACTTTGAGGTGAAACAACTTAAGGAAGTGATGTCAACTGAACATCCTTGTGACTTGGCATATGAATTCGGTGATGGGCTGTTTGATATTCATGAATACCCTGAAGGCTTTCCGGCTCCAGGTATGATGTTAAAATATGTGTCTTTATTCATATTGTTGAAACCTCATCAAATGTATTGGTTATTCCACGATACTATTTCAACCCAATCCTATGTTATCTATGCAAAACTGTTTGCTTTGCATGCCCCTGTTTTCTTGGGGCTCGCTAGGAAGTTTCAAGGTCTTTGCAATAAAAGCTCCACTATTGTGTTTCTTGAAGGAGAGTTCCAAGTATTTACCATTAGGGACAAAATTAGAGACTTGAGAGATGTTTTGCATCTTTGGAGTAACACTCACAAATTTGAGATGCTCTCGCGCAGCATGCTTCTCCTTGGTTTTCCAACCAAGCATCTATATCCTTTCAACGACCAGGTTGTAGTATATGTTCGATATTTGGGACCTGGAGTGTTAGTTGGCCAGGCATGGCAAGAAGGAAAAGCTCTGGAGCAGGTGCCGCGGAAATTATGTGCTGAAATATTGATGATCAAAGACTACAGTCAACGACCACTCCAAAAGCAGTAG

Protein sequence

MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPVFLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYSQRPLQKQ

Homology

[Close]

BLAST of Lsi02G028450 vs. ExPASy TrEMBL
Match: A0A0A0KCA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447880 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 8.2e-43
Identity = 107/222 (48.20%), Postives = 111/222 (50.00%), Query Frame = 0


Query: 1   MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMML 60
           + M LLAGFANSVSPLYFE+KQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPA     
Sbjct: 215 INMPLLAGFANSVSPLYFEMKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPA----- 274

Query: 61  KYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPVFLGLARKFQGLCNKSSTIVF 120
                                                                       
Sbjct: 275 ------------------------------------------------------------ 329

Query: 121 LEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRY 180
                                                     P KHLYPFNDQVVVYVRY
Sbjct: 335 ------------------------------------------PAKHLYPFNDQVVVYVRY 329

Query: 181 LGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYSQRPLQKQ 223
           LGPGVLVGQAWQEGKALEQVP+KLC EILMIKDYSQ+PLQKQ
Sbjct: 395 LGPGVLVGQAWQEGKALEQVPQKLCGEILMIKDYSQQPLQKQ 329

[Close]

BLAST of Lsi02G028450 vs. ExPASy TrEMBL
Match: A0A5A7UYS3 (WD repeat-containing protein 49 isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G00710 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-39
Identity = 103/222 (46.40%), Postives = 109/222 (49.10%), Query Frame = 0


Query: 1   MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMML 60
           + M LLAGFANSVSPLYFEVKQLKEVMSTEHPCDLA++FGDGLFDIHEYPEGFP      
Sbjct: 221 INMPLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAFDFGDGLFDIHEYPEGFPV----- 280

Query: 61  KYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPVFLGLARKFQGLCNKSSTIVF 120
                                                                       
Sbjct: 281 ------------------------------------------------------------ 335

Query: 121 LEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRY 180
                                                     P KHLYPFNDQVVVYVRY
Sbjct: 341 ------------------------------------------PAKHLYPFNDQVVVYVRY 335

Query: 181 LGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYSQR-PLQK 222
           LGPGVLVGQAWQEGKALEQVP+KLC EILMIKDY+Q+ PLQK
Sbjct: 401 LGPGVLVGQAWQEGKALEQVPQKLCGEILMIKDYNQQHPLQK 335

[Close]

BLAST of Lsi02G028450 vs. ExPASy TrEMBL
Match: A0A5D3C0T8 (WD repeat-containing protein 49 isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001770 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-39
Identity = 103/222 (46.40%), Postives = 109/222 (49.10%), Query Frame = 0


Query: 1   MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMML 60
           + M LLAGFANSVSPLYFEVKQLKEVMSTEHPCDLA++FGDGLFDIHEYPEGFP      
Sbjct: 218 INMPLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAFDFGDGLFDIHEYPEGFPV----- 277

Query: 61  KYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPVFLGLARKFQGLCNKSSTIVF 120
                                                                       
Sbjct: 278 ------------------------------------------------------------ 332

Query: 121 LEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRY 180
                                                     P KHLYPFNDQVVVYVRY
Sbjct: 338 ------------------------------------------PAKHLYPFNDQVVVYVRY 332

Query: 181 LGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYSQR-PLQK 222
           LGPGVLVGQAWQEGKALEQVP+KLC EILMIKDY+Q+ PLQK
Sbjct: 398 LGPGVLVGQAWQEGKALEQVPQKLCGEILMIKDYNQQHPLQK 332

[Close]

BLAST of Lsi02G028450 vs. ExPASy TrEMBL
Match: A0A6J1D593 (uncharacterized protein LOC111017125 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017125 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-38
Identity = 100/222 (45.05%), Postives = 108/222 (48.65%), Query Frame = 0


Query: 1   MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMML 60
           +G+SLLAG ANS +PLYFEVKQLKEVMSTE PCDLAYEFGDGLF+IHEYPEGFP      
Sbjct: 198 IGISLLAGLANSFAPLYFEVKQLKEVMSTEQPCDLAYEFGDGLFNIHEYPEGFPT----- 257

Query: 61  KYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPVFLGLARKFQGLCNKSSTIVF 120
                                                                       
Sbjct: 258 ------------------------------------------------------------ 312

Query: 121 LEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRY 180
                                                     P KH YPFNDQ+V+YVRY
Sbjct: 318 ------------------------------------------PVKHPYPFNDQLVMYVRY 312

Query: 181 LGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYSQRPLQKQ 223
           LGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYS RPLQ++
Sbjct: 378 LGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYSPRPLQEK 312

[Close]

BLAST of Lsi02G028450 vs. ExPASy TrEMBL
Match: A0A6J1D498 (uncharacterized protein LOC111017125 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017125 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-38
Identity = 100/222 (45.05%), Postives = 108/222 (48.65%), Query Frame = 0


Query: 1   MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMML 60
           +G+SLLAG ANS +PLYFEVKQLKEVMSTE PCDLAYEFGDGLF+IHEYPEGFP      
Sbjct: 211 IGISLLAGLANSFAPLYFEVKQLKEVMSTEQPCDLAYEFGDGLFNIHEYPEGFPT----- 270

Query: 61  KYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPVFLGLARKFQGLCNKSSTIVF 120
                                                                       
Sbjct: 271 ------------------------------------------------------------ 325

Query: 121 LEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRY 180
                                                     P KH YPFNDQ+V+YVRY
Sbjct: 331 ------------------------------------------PVKHPYPFNDQLVMYVRY 325

Query: 181 LGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYSQRPLQKQ 223
           LGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYS RPLQ++
Sbjct: 391 LGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYSPRPLQEK 325

[Close]

BLAST of Lsi02G028450 vs. NCBI nr
Match: XP_038899771.1 (uncharacterized protein LOC120087001 [Benincasa hispida])

HSP 1 Score: 186.8 bits (473), Expect = 2.0e-43
Identity = 109/222 (49.10%), Postives = 112/222 (50.45%), Query Frame = 0


Query: 1   MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMML 60
           +GMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYP GFPA     
Sbjct: 221 IGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPAGFPA----- 280

Query: 61  KYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPVFLGLARKFQGLCNKSSTIVF 120
                                                                       
Sbjct: 281 ------------------------------------------------------------ 335

Query: 121 LEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRY 180
                                                     P KHLYPFNDQVVVYVRY
Sbjct: 341 ------------------------------------------PAKHLYPFNDQVVVYVRY 335

Query: 181 LGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYSQRPLQKQ 223
           LGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYS+ P+QKQ
Sbjct: 401 LGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYSESPVQKQ 335

[Close]

BLAST of Lsi02G028450 vs. NCBI nr
Match: XP_004141740.2 (uncharacterized protein LOC101213828 [Cucumis sativus] >KAE8646483.1 hypothetical protein Csa_016678 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 1.7e-42
Identity = 107/222 (48.20%), Postives = 111/222 (50.00%), Query Frame = 0


Query: 1   MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMML 60
           + M LLAGFANSVSPLYFE+KQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPA     
Sbjct: 218 INMPLLAGFANSVSPLYFEMKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPA----- 277

Query: 61  KYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPVFLGLARKFQGLCNKSSTIVF 120
                                                                       
Sbjct: 278 ------------------------------------------------------------ 332

Query: 121 LEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRY 180
                                                     P KHLYPFNDQVVVYVRY
Sbjct: 338 ------------------------------------------PAKHLYPFNDQVVVYVRY 332

Query: 181 LGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYSQRPLQKQ 223
           LGPGVLVGQAWQEGKALEQVP+KLC EILMIKDYSQ+PLQKQ
Sbjct: 398 LGPGVLVGQAWQEGKALEQVPQKLCGEILMIKDYSQQPLQKQ 332

[Close]

BLAST of Lsi02G028450 vs. NCBI nr
Match: KAA0059346.1 (WD repeat-containing protein 49 isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 2.3e-39
Identity = 103/222 (46.40%), Postives = 109/222 (49.10%), Query Frame = 0


Query: 1   MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMML 60
           + M LLAGFANSVSPLYFEVKQLKEVMSTEHPCDLA++FGDGLFDIHEYPEGFP      
Sbjct: 221 INMPLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAFDFGDGLFDIHEYPEGFPV----- 280

Query: 61  KYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPVFLGLARKFQGLCNKSSTIVF 120
                                                                       
Sbjct: 281 ------------------------------------------------------------ 335

Query: 121 LEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRY 180
                                                     P KHLYPFNDQVVVYVRY
Sbjct: 341 ------------------------------------------PAKHLYPFNDQVVVYVRY 335

Query: 181 LGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYSQR-PLQK 222
           LGPGVLVGQAWQEGKALEQVP+KLC EILMIKDY+Q+ PLQK
Sbjct: 401 LGPGVLVGQAWQEGKALEQVPQKLCGEILMIKDYNQQHPLQK 335

[Close]

BLAST of Lsi02G028450 vs. NCBI nr
Match: TYK03979.1 (WD repeat-containing protein 49 isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 2.3e-39
Identity = 103/222 (46.40%), Postives = 109/222 (49.10%), Query Frame = 0


Query: 1   MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMML 60
           + M LLAGFANSVSPLYFEVKQLKEVMSTEHPCDLA++FGDGLFDIHEYPEGFP      
Sbjct: 218 INMPLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAFDFGDGLFDIHEYPEGFPV----- 277

Query: 61  KYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPVFLGLARKFQGLCNKSSTIVF 120
                                                                       
Sbjct: 278 ------------------------------------------------------------ 332

Query: 121 LEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRY 180
                                                     P KHLYPFNDQVVVYVRY
Sbjct: 338 ------------------------------------------PAKHLYPFNDQVVVYVRY 332

Query: 181 LGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYSQR-PLQK 222
           LGPGVLVGQAWQEGKALEQVP+KLC EILMIKDY+Q+ PLQK
Sbjct: 398 LGPGVLVGQAWQEGKALEQVPQKLCGEILMIKDYNQQHPLQK 332

[Close]

BLAST of Lsi02G028450 vs. NCBI nr
Match: XP_022148503.1 (uncharacterized protein LOC111017125 isoform X1 [Momordica charantia])

HSP 1 Score: 169.9 bits (429), Expect = 2.5e-38
Identity = 100/222 (45.05%), Postives = 108/222 (48.65%), Query Frame = 0


Query: 1   MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMML 60
           +G+SLLAG ANS +PLYFEVKQLKEVMSTE PCDLAYEFGDGLF+IHEYPEGFP      
Sbjct: 211 IGISLLAGLANSFAPLYFEVKQLKEVMSTEQPCDLAYEFGDGLFNIHEYPEGFPT----- 270

Query: 61  KYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPVFLGLARKFQGLCNKSSTIVF 120
                                                                       
Sbjct: 271 ------------------------------------------------------------ 325

Query: 121 LEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRY 180
                                                     P KH YPFNDQ+V+YVRY
Sbjct: 331 ------------------------------------------PVKHPYPFNDQLVMYVRY 325

Query: 181 LGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYSQRPLQKQ 223
           LGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYS RPLQ++
Sbjct: 391 LGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYSPRPLQEK 325

[Close]

BLAST of Lsi02G028450 vs. TAIR 10
Match: AT1G73090.1 (unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 109.4 bits (272), Expect = 3.8e-24
Identity = 65/213 (30.52%), Postives = 86/213 (40.38%), Query Frame = 0


Query: 2   GMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLK 61
           G  +++  AN+ SPLYFEV +  EVM+TE PCD+A +FGDGL  I +YP+GFP       
Sbjct: 200 GGPVVSTLANAFSPLYFEVTEAMEVMATEEPCDVACKFGDGLLAIEDYPQGFPR------ 259

Query: 62  YVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPVFLGLARKFQGLCNKSSTIVFL 121
                                                                       
Sbjct: 260 ------------------------------------------------------------ 305

Query: 122 EGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYL 181
                                                    P KH YPFND VV+Y+R++
Sbjct: 320 -----------------------------------------PAKHPYPFNDSVVIYIRHI 305

Query: 182 GPGVLVGQAWQEGKALEQVPRKLCAEILMIKDY 215
           GPGV VGQAWQEG+ L+QVP++LC++ILM+K Y
Sbjct: 380 GPGVCVGQAWQEGRELQQVPQRLCSDILMVKQY 305

[Close]

BLAST of Lsi02G028450 vs. TAIR 10
Match: AT1G73090.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages. )

HSP 1 Score: 109.4 bits (272), Expect = 3.8e-24
Identity = 65/213 (30.52%), Postives = 86/213 (40.38%), Query Frame = 0


Query: 2   GMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLK 61
           G  +++  AN+ SPLYFEV +  EVM+TE PCD+A +FGDGL  I +YP+GFP       
Sbjct: 228 GGPVVSTLANAFSPLYFEVTEAMEVMATEEPCDVACKFGDGLLAIEDYPQGFPR------ 287

Query: 62  YVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPVFLGLARKFQGLCNKSSTIVFL 121
                                                                       
Sbjct: 288 ------------------------------------------------------------ 333

Query: 122 EGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYL 181
                                                    P KH YPFND VV+Y+R++
Sbjct: 348 -----------------------------------------PAKHPYPFNDSVVIYIRHI 333

Query: 182 GPGVLVGQAWQEGKALEQVPRKLCAEILMIKDY 215
           GPGV VGQAWQEG+ L+QVP++LC++ILM+K Y
Sbjct: 408 GPGVCVGQAWQEGRELQQVPQRLCSDILMVKQY 333

The following BLAST results are available for this feature:

BLAST of Lsi02G028450 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G028450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCA7	8.2e-43	48.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447880 PE=4 SV=1	[more]
A0A5A7UYS3	1.1e-39	46.40	WD repeat-containing protein 49 isoform 2 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5D3C0T8	1.1e-39	46.40	WD repeat-containing protein 49 isoform 2 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1D593	1.2e-38	45.05	uncharacterized protein LOC111017125 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1D498	1.2e-38	45.05	uncharacterized protein LOC111017125 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Lsi02G028450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899771.1	2.0e-43	49.10	uncharacterized protein LOC120087001 [Benincasa hispida]	[more]
XP_004141740.2	1.7e-42	48.20	uncharacterized protein LOC101213828 [Cucumis sativus] >KAE8646483.1 hypothetica...	[more]
KAA0059346.1	2.3e-39	46.40	WD repeat-containing protein 49 isoform 2 [Cucumis melo var. makuwa]	[more]
TYK03979.1	2.3e-39	46.40	WD repeat-containing protein 49 isoform 2 [Cucumis melo var. makuwa]	[more]
XP_022148503.1	2.5e-38	45.05	uncharacterized protein LOC111017125 isoform X1 [Momordica charantia]	[more]

BLAST of Lsi02G028450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73090.1	3.8e-24	30.52	unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bac...	[more]
AT1G73090.2	3.8e-24	30.52	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37201	WD REPEAT PROTEIN	coord: 163..216 coord: 2..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G028450.1	Lsi02G028450.1	mRNA