Lsi02G028440 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G028440
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	WD repeat-containing protein 49 isoform 2
Location	chr02: 34627644 .. 34629310 (+)
RNA-Seq Expression	Lsi02G028440
Synteny	Lsi02G028440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTGAACAAGATGAAGGCAATGGCAGCTTCGAACCATCCCGTTCAGATTTCCCCAGGGACCTGCTGTTTCCCATTTTCCCGCCAAATCAACACCTTCAACACACCGCACCGGCGCCTCTGCTTTACGAACTCCAAAGGTCAGTTCATCTTCTTCTCTTTCCTCGCATTGACACTATTGCTTGATTTCACCACTTCCTTAGGCCTCGTATTTTCCATCAATCAAACAGGCAAATCCACTGGAATGAACTCAAGAGCTTTTTTTTTTTTTTTTTTCTTCCAATTAACATTTCTCTCTCGACTACGTTTCAGAATTTCACATGTTCGATTTCTAAAATTTCTGCCTCCTTTTCATCTCGTAGGACTGGGAATCGGATGGTACGGATGTGGAGTTTATGTACGGTCACCTGGTTGTGTGGTCGCTGCTGTAGCGGGAGGTAGGGAGAGGGAGCAAGTATCTTCTGCGTGGGATGAGGAGCCTTACGAATTGCTTCCGAACGGGAAGATACAGTACATAGATGAACAAGATGTAGTAACCTTTCTTGATCCGCCTAAGGAGCTTATACCATTAGACCCTGCTTCTTATAATCCTGCTGCTTATCTTTGGTATTAATTTCTTTCAAAACTTGTAACATTCTCAATCGGCTTTTGTTTGTTGCATATCATCATAAATTGATTAAACTCACTATAAATTTGTCACGGTCAGTGGTTGTTCTGAAGTATTTTACTCGTAATACAGTTTGAAATTTTTGACTTTTGATTGACAGGAAAAAGATTGAAGAAATTCCTGAGGAACGACGTCATAGACTTTTGCACCTCCTAACCCCTAGGTTACATACATGAAGCATTGTAATGCCTGTAGAGTTGTTTATACTCTTTCTTTTTCCTCATTAATGCAATTTTCCTTAATTTGAATGTATATATTTTTAAATTTGGTTGGGGACTATTTTAGCAAGAACAAAATTCTAACTTTCAAGTTCTGTTAGGATTTTGGAAATTCTGAAACCAGCAATATAATCATAATGCAGGTGTATATCAAGGGCTTGGGGAATAGCTGGCACACGATATGAGGATACAAAGTTAGTTAAAAAAACGGCATCTAGTTTGCTGCCAAATGAAGATGGCTTGGTTCTTGAATATTATAACTGCCTGAAAAGTGGAGGCAAGTAGTTCATTCACTACATACATAAAATTCTTAAGTTATTGTGATTTGTGTGGAAAGTGTAGAAATTGTGTCCTAATTTTTAAGATTCTTTCACTGTATAAGGAAAATGAGCTGATAAAGAACTAGAAAGATTGAAATTTGTAAACGGGTGGTGTTTTTTAGGAATTGATTTGAAGTTCAAATATTCAAGGTTTTATTTGATCTATTTCCTCAAAATTATGATTATATCATGCAAGCCTAACAACTTTGATTTTGAATATCTCAAATAGGACAAATACCTATTGGTTGGATTAATCGTTTCAAGAAGGTGAAACTTATCAAATCCATGTCCTCCCTTTCTTCTTTCAATTGTATAGTACAATGGAATCTATCTATTTACATCTTCTTGTTTATTAGGCATTAGTTTCTTGCAAGGATGGAAAGACATATGGGCGGATTATTGGTAAGGTCTCTCGACCTTTGGCAACTATATGTGCTTCTCCTCTAATGACATTAGGAACTCAG

mRNA sequence

GCTTGAACAAGATGAAGGCAATGGCAGCTTCGAACCATCCCGTTCAGATTTCCCCAGGGACCTGCTGTTTCCCATTTTCCCGCCAAATCAACACCTTCAACACACCGCACCGGCGCCTCTGCTTTACGAACTCCAAAGGACTGGGAATCGGATGGTACGGATGTGGAGTTTATGTACGGTCACCTGGTTGTGTGGTCGCTGCTGTAGCGGGAGGTAGGGAGAGGGAGCAAGTATCTTCTGCGTGGGATGAGGAGCCTTACGAATTGCTTCCGAACGGGAAGATACAGTACATAGATGAACAAGATGTAGTAACCTTTCTTGATCCGCCTAAGGAGCTTATACCATTAGACCCTGCTTCTTATAATCCTGCTGCTTATCTTTGGAAAAAGATTGAAGAAATTCCTGAGGAACGACGTCATAGACTTTTGCACCTCCTAACCCCTAGGTGTATATCAAGGGCTTGGGGAATAGCTGGCACACGATATGAGGATACAAAGTTAGTTAAAAAAACGGCATCTAGTTTGCTGCCAAATGAAGATGGCTTGGCATTAGTTTCTTGCAAGGATGGAAAGACATATGGGCGGATTATTGGTAAGGTCTCTCGACCTTTGGCAACTATATGTGCTTCTCCTCTAATGACATTAGGAACTCAG

Coding sequence (CDS)

ATGAAGGCAATGGCAGCTTCGAACCATCCCGTTCAGATTTCCCCAGGGACCTGCTGTTTCCCATTTTCCCGCCAAATCAACACCTTCAACACACCGCACCGGCGCCTCTGCTTTACGAACTCCAAAGGACTGGGAATCGGATGGTACGGATGTGGAGTTTATGTACGGTCACCTGGTTGTGTGGTCGCTGCTGTAGCGGGAGGTAGGGAGAGGGAGCAAGTATCTTCTGCGTGGGATGAGGAGCCTTACGAATTGCTTCCGAACGGGAAGATACAGTACATAGATGAACAAGATGTAGTAACCTTTCTTGATCCGCCTAAGGAGCTTATACCATTAGACCCTGCTTCTTATAATCCTGCTGCTTATCTTTGGAAAAAGATTGAAGAAATTCCTGAGGAACGACGTCATAGACTTTTGCACCTCCTAACCCCTAGGTGTATATCAAGGGCTTGGGGAATAGCTGGCACACGATATGAGGATACAAAGTTAGTTAAAAAAACGGCATCTAGTTTGCTGCCAAATGAAGATGGCTTGGCATTAGTTTCTTGCAAGGATGGAAAGACATATGGGCGGATTATTGGTAAGGTCTCTCGACCTTTGGCAACTATATGTGCTTCTCCTCTAATGACATTAGGAACTCAG

Protein sequence

MKAMAASNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGLALVSCKDGKTYGRIIGKVSRPLATICASPLMTLGTQ

Homology

[Close]

BLAST of Lsi02G028440 vs. ExPASy TrEMBL
Match: A0A0A0KCA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447880 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 5.3e-87
Identity = 163/213 (76.53%), Postives = 168/213 (78.87%), Query Frame = 0


Query: 5   AASNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAA 64
           A SN P+QISP TCC  F RQINTFNT HRRL FTN KGLGIGWY CGV VRSPGCVVAA
Sbjct: 3   ATSNRPLQISPWTCCSSFPRQINTFNTQHRRLSFTNFKGLGIGWYSCGVCVRSPGCVVAA 62

Query: 65  VAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLDPPKELIPLDPASYNPAAYLW 124
            AGGREREQVSS WDEEPYELLPNG+IQYIDEQDV +FLDPPKELIP DP SYNPAAYLW
Sbjct: 63  AAGGREREQVSSVWDEEPYELLPNGRIQYIDEQDVASFLDPPKELIPFDPDSYNPAAYLW 122

Query: 125 KKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL------ 184
           KKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYED KLVKKTASSLL NEDG+      
Sbjct: 123 KKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDPKLVKKTASSLLQNEDGMVLEYYN 182

Query: 185 ------------------ALVSCKDGKTYGRII 194
                             A+ S KDGK YGRII
Sbjct: 183 CLKSGGQIPIGWINRFKKAIFSSKDGKIYGRII 215

[Close]

BLAST of Lsi02G028440 vs. ExPASy TrEMBL
Match: A0A1S3CGG5 (uncharacterized protein LOC103500630 OS=Cucumis melo OX=3656 GN=LOC103500630 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 9.9e-86
Identity = 163/218 (74.77%), Postives = 172/218 (78.90%), Query Frame = 0


Query: 1   MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPG 60
           MKAMAA S+ PVQISP TCC  F RQINTFNT HRRL FTN KGLGIGWY CGV VRSPG
Sbjct: 1   MKAMAATSSRPVQISPWTCCSSFPRQINTFNTQHRRLSFTNFKGLGIGWYSCGVCVRSPG 60

Query: 61  CVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLDPPKELIPLDPASYNP 120
           CVVAAVAG +ERE+ SS WDE+PYELLPNG+IQYIDE DV +FLDPPKELIPLDPASYNP
Sbjct: 61  CVVAAVAGRKEREEASSVWDEKPYELLPNGRIQYIDELDVASFLDPPKELIPLDPASYNP 120

Query: 121 AAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL- 180
           AAYLWKKIE IPEERRHRLLHLLTPRCISRAWGIAG+RYED KLVKK ASSLL NEDG+ 
Sbjct: 121 AAYLWKKIEAIPEERRHRLLHLLTPRCISRAWGIAGSRYEDPKLVKKMASSLLQNEDGMV 180

Query: 181 -----------------------ALVSCKDGKTYGRII 194
                                  A+ SCKDGK YGRII
Sbjct: 181 LEYYNCLKSGGQIPIGWINRFKKAIFSCKDGKIYGRII 218

[Close]

BLAST of Lsi02G028440 vs. ExPASy TrEMBL
Match: A0A5D3C0T8 (WD repeat-containing protein 49 isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001770 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.9e-85
Identity = 162/218 (74.31%), Postives = 171/218 (78.44%), Query Frame = 0


Query: 1   MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPG 60
           MKAMAA S+ PVQISP TCC  F RQINTFNT HRRL FTN KGLGIGWY CGV VRSPG
Sbjct: 1   MKAMAATSSRPVQISPWTCCSSFPRQINTFNTQHRRLSFTNFKGLGIGWYSCGVCVRSPG 60

Query: 61  CVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLDPPKELIPLDPASYNP 120
           CVV AVAG +ERE+ SS WDE+PYELLPNG+IQYIDE DV +FLDPPKELIPLDPASYNP
Sbjct: 61  CVVTAVAGRKEREEASSVWDEKPYELLPNGRIQYIDELDVASFLDPPKELIPLDPASYNP 120

Query: 121 AAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL- 180
           AAYLWKKIE IPEERRHRLLHLLTPRCISRAWGIAG+RYED KLVKK ASSLL NEDG+ 
Sbjct: 121 AAYLWKKIEAIPEERRHRLLHLLTPRCISRAWGIAGSRYEDPKLVKKMASSLLQNEDGMV 180

Query: 181 -----------------------ALVSCKDGKTYGRII 194
                                  A+ SCKDGK YGRII
Sbjct: 181 LEYYNCLKSGGQIPIGWINRFKKAIFSCKDGKIYGRII 218

[Close]

BLAST of Lsi02G028440 vs. ExPASy TrEMBL
Match: A0A5A7UYS3 (WD repeat-containing protein 49 isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G00710 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 6.4e-85
Identity = 162/221 (73.30%), Postives = 171/221 (77.38%), Query Frame = 0


Query: 1   MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPG 60
           MKAMAA S+ PVQISP TCC  F RQINTFNT HRRL FTN KGLGIGWY CGV VRSPG
Sbjct: 1   MKAMAATSSRPVQISPWTCCSSFPRQINTFNTQHRRLSFTNFKGLGIGWYSCGVCVRSPG 60

Query: 61  CVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLDPPKELIPLDPASYNP 120
           CVV AVAG +ERE+ SS WDE+PYELLPNG+IQYIDE DV +FLDPPKELIPLDPASYNP
Sbjct: 61  CVVTAVAGRKEREEASSVWDEKPYELLPNGRIQYIDELDVASFLDPPKELIPLDPASYNP 120

Query: 121 AAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL- 180
           AAYLWKKIE IPEERRHRLLHLLTPRCISRAWGIAG+RYED KLVKK ASSLL NEDG+ 
Sbjct: 121 AAYLWKKIEAIPEERRHRLLHLLTPRCISRAWGIAGSRYEDPKLVKKMASSLLQNEDGMV 180

Query: 181 --------------------------ALVSCKDGKTYGRII 194
                                     A+ SCKDGK YGRII
Sbjct: 181 LEYYNCLKSGGKYTIEFIYLHLLVYQAIFSCKDGKIYGRII 221

[Close]

BLAST of Lsi02G028440 vs. ExPASy TrEMBL
Match: A0A6J1KHW6 (uncharacterized protein LOC111494560 OS=Cucurbita maxima OX=3661 GN=LOC111494560 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 9.6e-81
Identity = 158/218 (72.48%), Postives = 167/218 (76.61%), Query Frame = 0


Query: 1   MKAMAASNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGC 60
           MKAMAAS+ PVQIS GTC FPFSRQINTF  P RRLC+TNSKGL   W+G GV V  P  
Sbjct: 1   MKAMAASSRPVQISHGTCFFPFSRQINTFCRPRRRLCYTNSKGL--KWFGYGVCVSPPSF 60

Query: 61  VVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLDPPKELIPLDPASYNPA 120
            VAAVAGGRER QVS+AWDE PYELLPNGKIQY+DEQDVVTFLDPPKELIPLDP +YNPA
Sbjct: 61  EVAAVAGGRERAQVSAAWDEGPYELLPNGKIQYLDEQDVVTFLDPPKELIPLDPTTYNPA 120

Query: 121 AYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDG--- 180
           AYLWKKIE IPEERRH LLHLL+PRCISRAWGIAGTRY+D KLVKK ASSLL N+DG   
Sbjct: 121 AYLWKKIEVIPEERRHNLLHLLSPRCISRAWGIAGTRYDDPKLVKKMASSLLQNKDGSTL 180

Query: 181 ---------------------LALVSCKDGKTYGRIIG 195
                                 AL SCKDGKTYGR IG
Sbjct: 181 EYYNCIKSGGQIPIAWINHFKKALFSCKDGKTYGRFIG 216

[Close]

BLAST of Lsi02G028440 vs. NCBI nr
Match: XP_038899771.1 (uncharacterized protein LOC120087001 [Benincasa hispida])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 173/219 (79.00%), Postives = 180/219 (82.19%), Query Frame = 0


Query: 1   MKAMAASNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGC 60
           MKAMAAS+  VQISPGTCC PF  QINTFNTP RRLCFTNSKGLGIGWYGCG+ VRSPGC
Sbjct: 4   MKAMAASSSSVQISPGTCCIPFPHQINTFNTPRRRLCFTNSKGLGIGWYGCGICVRSPGC 63

Query: 61  -VVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLDPPKELIPLDPASYNP 120
            VVAA+AGGREREQ SSAWDEEPYELLPNGKIQY+DEQDVVTFLDPPKELIPLD ASYNP
Sbjct: 64  VVVAAIAGGREREQASSAWDEEPYELLPNGKIQYLDEQDVVTFLDPPKELIPLDLASYNP 123

Query: 121 AAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL- 180
           AAYLWKKIE+IPEERRHRLL LLTPRCISRAWGIAGTRYED KL+KK ASSLL NEDG+ 
Sbjct: 124 AAYLWKKIEDIPEERRHRLLQLLTPRCISRAWGIAGTRYEDPKLLKKMASSLLQNEDGMV 183

Query: 181 -----------------------ALVSCKDGKTYGRIIG 195
                                  AL SCKDGKTYGRIIG
Sbjct: 184 LEYYYCLKSGGQIPIGWINRFKKALFSCKDGKTYGRIIG 222

[Close]

BLAST of Lsi02G028440 vs. NCBI nr
Match: XP_004141740.2 (uncharacterized protein LOC101213828 [Cucumis sativus] >KAE8646483.1 hypothetical protein Csa_016678 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 4.4e-88
Identity = 168/218 (77.06%), Postives = 173/218 (79.36%), Query Frame = 0


Query: 1   MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPG 60
           MKAMAA SN P+QISP TCC  F RQINTFNT HRRL FTN KGLGIGWY CGV VRSPG
Sbjct: 1   MKAMAATSNRPLQISPWTCCSSFPRQINTFNTQHRRLSFTNFKGLGIGWYSCGVCVRSPG 60

Query: 61  CVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLDPPKELIPLDPASYNP 120
           CVVAA AGGREREQVSS WDEEPYELLPNG+IQYIDEQDV +FLDPPKELIP DP SYNP
Sbjct: 61  CVVAAAAGGREREQVSSVWDEEPYELLPNGRIQYIDEQDVASFLDPPKELIPFDPDSYNP 120

Query: 121 AAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL- 180
           AAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYED KLVKKTASSLL NEDG+ 
Sbjct: 121 AAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDPKLVKKTASSLLQNEDGMV 180

Query: 181 -----------------------ALVSCKDGKTYGRII 194
                                  A+ S KDGK YGRII
Sbjct: 181 LEYYNCLKSGGQIPIGWINRFKKAIFSSKDGKIYGRII 218

[Close]

BLAST of Lsi02G028440 vs. NCBI nr
Match: XP_008462224.1 (PREDICTED: uncharacterized protein LOC103500630 [Cucumis melo])

HSP 1 Score: 326.2 bits (835), Expect = 2.0e-85
Identity = 163/218 (74.77%), Postives = 172/218 (78.90%), Query Frame = 0


Query: 1   MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPG 60
           MKAMAA S+ PVQISP TCC  F RQINTFNT HRRL FTN KGLGIGWY CGV VRSPG
Sbjct: 1   MKAMAATSSRPVQISPWTCCSSFPRQINTFNTQHRRLSFTNFKGLGIGWYSCGVCVRSPG 60

Query: 61  CVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLDPPKELIPLDPASYNP 120
           CVVAAVAG +ERE+ SS WDE+PYELLPNG+IQYIDE DV +FLDPPKELIPLDPASYNP
Sbjct: 61  CVVAAVAGRKEREEASSVWDEKPYELLPNGRIQYIDELDVASFLDPPKELIPLDPASYNP 120

Query: 121 AAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL- 180
           AAYLWKKIE IPEERRHRLLHLLTPRCISRAWGIAG+RYED KLVKK ASSLL NEDG+ 
Sbjct: 121 AAYLWKKIEAIPEERRHRLLHLLTPRCISRAWGIAGSRYEDPKLVKKMASSLLQNEDGMV 180

Query: 181 -----------------------ALVSCKDGKTYGRII 194
                                  A+ SCKDGK YGRII
Sbjct: 181 LEYYNCLKSGGQIPIGWINRFKKAIFSCKDGKIYGRII 218

[Close]

BLAST of Lsi02G028440 vs. NCBI nr
Match: TYK03979.1 (WD repeat-containing protein 49 isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 324.7 bits (831), Expect = 6.0e-85
Identity = 162/218 (74.31%), Postives = 171/218 (78.44%), Query Frame = 0


Query: 1   MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPG 60
           MKAMAA S+ PVQISP TCC  F RQINTFNT HRRL FTN KGLGIGWY CGV VRSPG
Sbjct: 1   MKAMAATSSRPVQISPWTCCSSFPRQINTFNTQHRRLSFTNFKGLGIGWYSCGVCVRSPG 60

Query: 61  CVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLDPPKELIPLDPASYNP 120
           CVV AVAG +ERE+ SS WDE+PYELLPNG+IQYIDE DV +FLDPPKELIPLDPASYNP
Sbjct: 61  CVVTAVAGRKEREEASSVWDEKPYELLPNGRIQYIDELDVASFLDPPKELIPLDPASYNP 120

Query: 121 AAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL- 180
           AAYLWKKIE IPEERRHRLLHLLTPRCISRAWGIAG+RYED KLVKK ASSLL NEDG+ 
Sbjct: 121 AAYLWKKIEAIPEERRHRLLHLLTPRCISRAWGIAGSRYEDPKLVKKMASSLLQNEDGMV 180

Query: 181 -----------------------ALVSCKDGKTYGRII 194
                                  A+ SCKDGK YGRII
Sbjct: 181 LEYYNCLKSGGQIPIGWINRFKKAIFSCKDGKIYGRII 218

[Close]

BLAST of Lsi02G028440 vs. NCBI nr
Match: KAA0059346.1 (WD repeat-containing protein 49 isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 323.6 bits (828), Expect = 1.3e-84
Identity = 162/221 (73.30%), Postives = 171/221 (77.38%), Query Frame = 0


Query: 1   MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPG 60
           MKAMAA S+ PVQISP TCC  F RQINTFNT HRRL FTN KGLGIGWY CGV VRSPG
Sbjct: 1   MKAMAATSSRPVQISPWTCCSSFPRQINTFNTQHRRLSFTNFKGLGIGWYSCGVCVRSPG 60

Query: 61  CVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLDPPKELIPLDPASYNP 120
           CVV AVAG +ERE+ SS WDE+PYELLPNG+IQYIDE DV +FLDPPKELIPLDPASYNP
Sbjct: 61  CVVTAVAGRKEREEASSVWDEKPYELLPNGRIQYIDELDVASFLDPPKELIPLDPASYNP 120

Query: 121 AAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL- 180
           AAYLWKKIE IPEERRHRLLHLLTPRCISRAWGIAG+RYED KLVKK ASSLL NEDG+ 
Sbjct: 121 AAYLWKKIEAIPEERRHRLLHLLTPRCISRAWGIAGSRYEDPKLVKKMASSLLQNEDGMV 180

Query: 181 --------------------------ALVSCKDGKTYGRII 194
                                     A+ SCKDGK YGRII
Sbjct: 181 LEYYNCLKSGGKYTIEFIYLHLLVYQAIFSCKDGKIYGRII 221

[Close]

BLAST of Lsi02G028440 vs. TAIR 10
Match: AT1G73090.1 (unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 172.6 bits (436), Expect = 3.5e-43
Identity = 85/112 (75.89%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 60  CVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLDPPKELIPLDPASYNP 119
           CVV AV GGR  E   S WDE+PYE LP GK  Y+DE DVVTFLDPPKELIPLDPASYNP
Sbjct: 44  CVVMAVQGGRGYE---SPWDEKPYETLPTGKRVYVDESDVVTFLDPPKELIPLDPASYNP 103

Query: 120 AAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSL 172
           AAYLWKKIE+IPEERRH LL LL PR ISRAW IA TRYED KL K TAS +
Sbjct: 104 AAYLWKKIEDIPEERRHHLLQLLEPRLISRAWEIASTRYEDPKLAKMTASKI 152

[Close]

BLAST of Lsi02G028440 vs. TAIR 10
Match: AT1G73090.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages. )

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-38
Identity = 85/140 (60.71%), Postives = 89/140 (63.57%), Query Frame = 0


Query: 60  CVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLDPPKELIPLDPASYNP 119
           CVV AV GGR  E   S WDE+PYE LP GK  Y+DE DVVTFLDPPKELIPLDPASYNP
Sbjct: 44  CVVMAVQGGRGYE---SPWDEKPYETLPTGKRVYVDESDVVTFLDPPKELIPLDPASYNP 103

Query: 120 AAYLWKKIEEIPEERRHRLLHLLTP----------------------------RCISRAW 172
           AAYLWKKIE+IPEERRH LL LL P                            R ISRAW
Sbjct: 104 AAYLWKKIEDIPEERRHHLLQLLEPRLDSYAKEVDMEKELRACTVFFMRVYVCRLISRAW 163

The following BLAST results are available for this feature:

BLAST of Lsi02G028440 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G028440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCA7	5.3e-87	76.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447880 PE=4 SV=1	[more]
A0A1S3CGG5	9.9e-86	74.77	uncharacterized protein LOC103500630 OS=Cucumis melo OX=3656 GN=LOC103500630 PE=...	[more]
A0A5D3C0T8	2.9e-85	74.31	WD repeat-containing protein 49 isoform 2 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5A7UYS3	6.4e-85	73.30	WD repeat-containing protein 49 isoform 2 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1KHW6	9.6e-81	72.48	uncharacterized protein LOC111494560 OS=Cucurbita maxima OX=3661 GN=LOC111494560...	[more]

BLAST of Lsi02G028440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899771.1	1.3e-92	79.00	uncharacterized protein LOC120087001 [Benincasa hispida]	[more]
XP_004141740.2	4.4e-88	77.06	uncharacterized protein LOC101213828 [Cucumis sativus] >KAE8646483.1 hypothetica...	[more]
XP_008462224.1	2.0e-85	74.77	PREDICTED: uncharacterized protein LOC103500630 [Cucumis melo]	[more]
TYK03979.1	6.0e-85	74.31	WD repeat-containing protein 49 isoform 2 [Cucumis melo var. makuwa]	[more]
KAA0059346.1	1.3e-84	73.30	WD repeat-containing protein 49 isoform 2 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi02G028440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73090.1	3.5e-43	75.89	unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bac...	[more]
AT1G73090.2	1.2e-38	60.71	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37201	WD REPEAT PROTEIN	coord: 60..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G028440.1	Lsi02G028440.1	mRNA