Lsi02G028290 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G028290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Pyridoxamine 5'-phosphate oxidase family protein
Location	chr02: 34497966 .. 34499766 (+)
RNA-Seq Expression	Lsi02G028290
Synteny	Lsi02G028290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACGCTGTATATATTACTGTAAGCGGCGACCGCAGAAATATGCAATTAGGGTTTTGATGTTTCCGCGTCGAACTGTGACTGGAAATTTACGACAACAAAGGCCACTTTTACGAGTCGATATTTTGTTTTTGTTTTTTGTTTTCTTTTTACTGACGACCTTAAACTTTCTATTAAAATGAATTTTGACTGTCTTTTTTCAAAACAAGGTTTTCTAATATTTCATAAGCCTTTCTCCGAATTATTATTTTTTATTTTCTCACTTTTGCTCTAGTTCTAGCTCACTTGCTGGCTCTTGTCTCTGCACTTGGTTCGATTGGCGTATGGAAAAATTTCGCTTGTTGTCACCAATTATCGCGTGTTGCTGGAGTAGGAAGAAACAATTTCGTTCACTGTCGCCATTGACATTAGTGGACAAAATCCAGGGAAGTGAATATTATCGTTGCCAGAGATGGAATATAGAGAAGAGATCTAAAGAAGAAGGTAGGAGGAAGGGGGGAGAGAGATTTTGAGAGAGAAGTAGAATGTGAGTTGAGAGAGAAAGGAAGAAAAGGAAATATTAAAAAAAAGTTAAAAAGGGTCGTAAAACCTTATTTTGAAAAACCAGGTCAAAAGAACATTTTGGTCCAATTTTTTAGGTTATTCTATCAAATTTCTCGTTGATATTTCATTGATTTTGAGCCCCTATACTGGCAAAGATGCGTTAGTTTTAACGTGTCTTGAGAAGTGAAAACAAGGTCAAGAGCTTTTTGCTGGTTGCACTTCTATTATTAGTCTTTTCTCCTATCGGTAATCTTTTTGTTTTGGTAATCTATGCAATGGATTGATTGTGTAGTTATTTATTTGACTGATGCCTTATTGGTTGATGTGCCCCATAAATGCTTTAGTCCTAGCGGACATGTGAACTTTGAGTCATTTGAAGGTGGAGTGATGTATGAACGTAGTTATAAACATGGACTGGAGGAATTTGAAAGAAGCAACAGACTACATTCTTTACAGCTTGGTTGATAGCTTTTATGGTTCTGTAATCAATGCTTTGGATGCTTTAGAATATGATTGGATGTAAAAAAAAGAAAAAAGATGGGATGTACTACTATAATTCAGAACCATCACAATTTTATTTTTAAAAAAGATTAATTTGATTTAATTTGTTAGAGAGAATGAGAGATATAAAAGATCTATTACTGGTGCTTTTATTTGATTCACGAGATAGCTTTCATTTTGTAATGCCATGAAAATGAATAGATGTCATATATTAAGAAATGGGCGTGGATTTGTTATGATGGTGTCTCTTGTTTCCTCAAGGATGAGCTAAATTTCACTCAAAGCAACGAGAAGAATGCAAATGAGCCCCTGAAGGTGGATGTATCTCTTACGGTTCCTTCTGGCGGTGGAAGTGGAACTAGAGCCGGTCTTTTTAGAACACCAATATCTGGTGGTGTGCAGAGTGCAACCTCAGCACATGGTCTACCTAGACCGGCCTTAGCTGTCCGCAATCTTATGGAACAGGTCAGGCTTAAACTTCATTCATTTTATTATTGTTTAGTGTAGCAGAAATTATCAATGTCATACTGTCATATATAAACTTCAATAGTTGTTGCTTTCTGGATTGCAAAGACTTTCTAAATTAGATCTTCTTTGTACTTTTAAGGCCAGATTCGCTCATTTGTGCACGGTGATGTCTCGGATGCACCATCGCAGGCAAGGATATCCATTTGGTTCTTTAGTGGATTTTGCAGCTGACTCCATGGGCCGTAAGTCAATTAGATTCAACATTGGCCAGATAGTCTTTCCCTGTTAA

mRNA sequence

ATGCACGCTGATGAGCTAAATTTCACTCAAAGCAACGAGAAGAATGCAAATGAGCCCCTGAAGGTGGATGTATCTCTTACGGTTCCTTCTGGCGGTGGAAGTGGAACTAGAGCCGGTCTTTTTAGAACACCAATATCTGGTGGTGTGCAGAGTGCAACCTCAGCACATGGTCTACCTAGACCGGCCTTAGCTGTCCGCAATCTTATGGAACAGGCCAGATTCGCTCATTTGTGCACGGTGATGTCTCGGATGCACCATCGCAGGCAAGGATATCCATTTGGTTCTTTAGTGGATTTTGCAGCTGACTCCATGGGCCGTAAGTCAATTAGATTCAACATTGGCCAGATAGTCTTTCCCTGTTAA

Coding sequence (CDS)

ATGCACGCTGATGAGCTAAATTTCACTCAAAGCAACGAGAAGAATGCAAATGAGCCCCTGAAGGTGGATGTATCTCTTACGGTTCCTTCTGGCGGTGGAAGTGGAACTAGAGCCGGTCTTTTTAGAACACCAATATCTGGTGGTGTGCAGAGTGCAACCTCAGCACATGGTCTACCTAGACCGGCCTTAGCTGTCCGCAATCTTATGGAACAGGCCAGATTCGCTCATTTGTGCACGGTGATGTCTCGGATGCACCATCGCAGGCAAGGATATCCATTTGGTTCTTTAGTGGATTTTGCAGCTGACTCCATGGGCCGTAAGTCAATTAGATTCAACATTGGCCAGATAGTCTTTCCCTGTTAA

Protein sequence

MHADELNFTQSNEKNANEPLKVDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGRKSIRFNIGQIVFPC

Homology

[Close]

BLAST of Lsi02G028290 vs. ExPASy TrEMBL
Match: A0A5A7UTT3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G00580 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.3e-47
Identity = 99/109 (90.83%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 4   DELNFTQSNEKNANEPLKVDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 63
           DELNFTQ++EKNANE LK+DVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL
Sbjct: 78  DELNFTQNDEKNANELLKMDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 137

Query: 64  AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGRKSIRFN 113
           AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMG     F+
Sbjct: 138 AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGHPIFSFS 186

[Close]

BLAST of Lsi02G028290 vs. ExPASy TrEMBL
Match: A0A5D3BYP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001900 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.3e-47
Identity = 99/109 (90.83%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 4   DELNFTQSNEKNANEPLKVDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 63
           DELNFTQ++EKNANE LK+DVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL
Sbjct: 78  DELNFTQNDEKNANELLKMDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 137

Query: 64  AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGRKSIRFN 113
           AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMG     F+
Sbjct: 138 AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGHPIFSFS 186

[Close]

BLAST of Lsi02G028290 vs. ExPASy TrEMBL
Match: A0A1S3CGC6 (uncharacterized protein LOC103500616 OS=Cucumis melo OX=3656 GN=LOC103500616 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.3e-47
Identity = 99/109 (90.83%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 4   DELNFTQSNEKNANEPLKVDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 63
           DELNFTQ++EKNANE LK+DVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL
Sbjct: 78  DELNFTQNDEKNANELLKMDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 137

Query: 64  AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGRKSIRFN 113
           AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMG     F+
Sbjct: 138 AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGHPIFSFS 186

[Close]

BLAST of Lsi02G028290 vs. ExPASy TrEMBL
Match: A0A6J1JPF6 (uncharacterized protein LOC111488659 OS=Cucurbita maxima OX=3661 GN=LOC111488659 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.1e-44
Identity = 97/109 (88.99%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 4   DELNFTQSNEKNANEPLKVDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 63
           DELNFTQSNEKNANE LKVD SLT PS  GSGTRAGLFRTPISGGVQSATSAHGLPRPAL
Sbjct: 72  DELNFTQSNEKNANERLKVDASLTAPS--GSGTRAGLFRTPISGGVQSATSAHGLPRPAL 131

Query: 64  AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGRKSIRFN 113
           AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFA DSMG     F+
Sbjct: 132 AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFATDSMGHPIFSFS 178

[Close]

BLAST of Lsi02G028290 vs. ExPASy TrEMBL
Match: A0A0A0KAK0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447740 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.1e-44
Identity = 95/109 (87.16%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 4   DELNFTQSNEKNANEPLKVDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 63
           DE+NFT+++EKNANE  KVDVSLTVPS  GSGTRAGLFRTPISGGVQSATSAHGLPRPAL
Sbjct: 78  DEVNFTKNDEKNANELPKVDVSLTVPSASGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 137

Query: 64  AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGRKSIRFN 113
           AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMG     F+
Sbjct: 138 AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGHPIFSFS 186

[Close]

BLAST of Lsi02G028290 vs. NCBI nr
Match: XP_038899183.1 (uncharacterized protein LOC120086545 [Benincasa hispida])

HSP 1 Score: 201.4 bits (511), Expect = 4.3e-48
Identity = 100/109 (91.74%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 4   DELNFTQSNEKNANEPLKVDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 63
           DE+NFTQSNEKNANEPL+VDVSLTVPSG GSGTRAGLFRTPISGGVQSATSAHGLPRPAL
Sbjct: 78  DEINFTQSNEKNANEPLEVDVSLTVPSGSGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 137

Query: 64  AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGRKSIRFN 113
           AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMG     F+
Sbjct: 138 AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGHPIFSFS 186

[Close]

BLAST of Lsi02G028290 vs. NCBI nr
Match: KAA0059333.1 (uncharacterized protein E6C27_scaffold242G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 4.7e-47
Identity = 99/109 (90.83%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 4   DELNFTQSNEKNANEPLKVDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 63
           DELNFTQ++EKNANE LK+DVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL
Sbjct: 78  DELNFTQNDEKNANELLKMDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 137

Query: 64  AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGRKSIRFN 113
           AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMG     F+
Sbjct: 138 AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGHPIFSFS 186

[Close]

BLAST of Lsi02G028290 vs. NCBI nr
Match: XP_008462202.1 (PREDICTED: uncharacterized protein LOC103500616 [Cucumis melo])

HSP 1 Score: 198.0 bits (502), Expect = 4.7e-47
Identity = 99/109 (90.83%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 4   DELNFTQSNEKNANEPLKVDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 63
           DELNFTQ++EKNANE LK+DVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL
Sbjct: 78  DELNFTQNDEKNANELLKMDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 137

Query: 64  AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGRKSIRFN 113
           AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMG     F+
Sbjct: 138 AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGHPIFSFS 186

[Close]

BLAST of Lsi02G028290 vs. NCBI nr
Match: TYK03992.1 (uncharacterized protein E5676_scaffold347G001900 [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 4.7e-47
Identity = 99/109 (90.83%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 4   DELNFTQSNEKNANEPLKVDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 63
           DELNFTQ++EKNANE LK+DVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL
Sbjct: 78  DELNFTQNDEKNANELLKMDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 137

Query: 64  AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGRKSIRFN 113
           AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMG     F+
Sbjct: 138 AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGHPIFSFS 186

[Close]

BLAST of Lsi02G028290 vs. NCBI nr
Match: XP_004141750.1 (uncharacterized protein LOC101216483 [Cucumis sativus] >KGN45412.1 hypothetical protein Csa_016325 [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 2.2e-44
Identity = 95/109 (87.16%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 4   DELNFTQSNEKNANEPLKVDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 63
           DE+NFT+++EKNANE  KVDVSLTVPS  GSGTRAGLFRTPISGGVQSATSAHGLPRPAL
Sbjct: 78  DEVNFTKNDEKNANELPKVDVSLTVPSASGSGTRAGLFRTPISGGVQSATSAHGLPRPAL 137

Query: 64  AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGRKSIRFN 113
           AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMG     F+
Sbjct: 138 AVRNLMEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGHPIFSFS 186

[Close]

BLAST of Lsi02G028290 vs. TAIR 10
Match: AT1G51560.1 (Pyridoxamine 5'-phosphate oxidase family protein )

HSP 1 Score: 154.5 bits (389), Expect = 5.6e-38
Identity = 78/102 (76.47%), Postives = 85/102 (83.33%), Query Frame = 0


Query: 11  SNEKNANEPLKVDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLME 70
           S EK++   + V+ SL VP GG  GTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLME
Sbjct: 99  SGEKDSENIIDVETSLAVPHGG--GTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLME 158

Query: 71  QARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGRKSIRFN 113
           QARFAHLCTVMS+MHHRR+GYPFGSLVDFA D MG     F+
Sbjct: 159 QARFAHLCTVMSKMHHRREGYPFGSLVDFAPDPMGHPIFSFS 198

[Close]

BLAST of Lsi02G028290 vs. TAIR 10
Match: AT3G21140.1 (Pyridoxamine 5'-phosphate oxidase family protein )

HSP 1 Score: 146.4 bits (368), Expect = 1.5e-35
Identity = 73/104 (70.19%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 9   TQSNEKNANEPLKVDVSLTVPSGGGSGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNL 68
           + SN + ++  + V+ SL  P GGG G RAGLFRTPISGGVQ+ATSAH LPRPALAVRNL
Sbjct: 92  SNSNGETSHSVIDVEASLAHPQGGG-GNRAGLFRTPISGGVQNATSAHALPRPALAVRNL 151

Query: 69  MEQARFAHLCTVMSRMHHRRQGYPFGSLVDFAADSMGRKSIRFN 113
           +EQARFAHLCTVMS+MHHRR+GYPFGSLVDFA D MG     F+
Sbjct: 152 LEQARFAHLCTVMSKMHHRREGYPFGSLVDFAPDRMGHPIFLFS 194

The following BLAST results are available for this feature:

BLAST of Lsi02G028290 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G028290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UTT3	2.3e-47	90.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BYP2	2.3e-47	90.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CGC6	2.3e-47	90.83	uncharacterized protein LOC103500616 OS=Cucumis melo OX=3656 GN=LOC103500616 PE=...	[more]
A0A6J1JPF6	1.1e-44	88.99	uncharacterized protein LOC111488659 OS=Cucurbita maxima OX=3661 GN=LOC111488659...	[more]
A0A0A0KAK0	1.1e-44	87.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447740 PE=4 SV=1	[more]

BLAST of Lsi02G028290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899183.1	4.3e-48	91.74	uncharacterized protein LOC120086545 [Benincasa hispida]	[more]
KAA0059333.1	4.7e-47	90.83	uncharacterized protein E6C27_scaffold242G00580 [Cucumis melo var. makuwa]	[more]
XP_008462202.1	4.7e-47	90.83	PREDICTED: uncharacterized protein LOC103500616 [Cucumis melo]	[more]
TYK03992.1	4.7e-47	90.83	uncharacterized protein E5676_scaffold347G001900 [Cucumis melo var. makuwa]	[more]
XP_004141750.1	2.2e-44	87.16	uncharacterized protein LOC101216483 [Cucumis sativus] >KGN45412.1 hypothetical ...	[more]

BLAST of Lsi02G028290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51560.1	5.6e-38	76.47	Pyridoxamine 5'-phosphate oxidase family protein	[more]
AT3G21140.1	1.5e-35	70.19	Pyridoxamine 5'-phosphate oxidase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012349	FMN-binding split barrel	GENE3D	2.30.110.10		coord: 55..117 e-value: 8.5E-11 score: 44.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR13343:SF29	PYRIDOXAMINE 5'-PHOSPHATE OXIDASE FAMILY PROTEIN	coord: 6..106
None	No IPR available	PANTHER	PTHR13343	CREG1 PROTEIN	coord: 6..106
None	No IPR available	SUPERFAMILY	50475	FMN-binding split barrel	coord: 62..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G028290.1	Lsi02G028290.1	mRNA