Lsi02G028060 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G028060
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Cytochrome c-type biogenesis protein
Location	chr02: 34252092 .. 34253019 (+)
RNA-Seq Expression	Lsi02G028060
Synteny	Lsi02G028060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTTGGGCAACTGTTCTAATTCTTGTTTCCTCAATTGCTAATAGTTTTATGTTGTTGATTTGATTTTTGCATCTGATATACGGTGATTAGGTCAATCTTGGTTTTTCTAAATTATTGATTATATATATTCTGTGTATTTAGCTGATGTTAGGCCCGAAGTTCCCGAATCAAGGAAAAAACCAGTCGGTCGGTTTAAATTCAAAAACTGTTATTAGTATTAGTATTATTATTATATATTTTTTCCTGTTTATATTTTAAAGAACTTACAAGATTATTTACTCTACACAAATCTATGACAACGTCACAACGATAATGGAAGTTATAGAATACTGTATAAAAGAAGGATAAACTCGATTATATTTTAACATTACTATTTTTGGGAGTTCATGCTGTTTAGGCTAAACTCTTGAACCTTTGAGCAACTTGCTTAACTAAATTCGGTATAAAATTCTTTTGCTTTTCACTTTTTTTCGATTCCATTAATCCCATTGAGAATTCATAGTGTTCTTTATGAGGAAAATAACCAGGGCTAGATTCATAATGTTTACTTCTTCCTCTTTGTAGTTCGATAACATTGTAACTGGAACTTGATCTGCTATTTATGAGATTTTCAGCTGAAGAAAGTTTAAACTTTTAAGCTTGATTTATCTTTAACGTGTATTTTGCATTTAAATGATTTCTTGGTATTTTCTTGCAGTTGCAGTGCAGTCTGGTCACGCTCCATGGTGTCTAAAATGGAGAGTGATGAGAATGCTGTGAAAAAAACACAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCACAATGTTAGGTGCATCGAGTGTGGTAGTCAATCCATTGAAGATTCACAAGCAGATATCGCGATTCTCCTCAGAAAGGTACCATTTCTTTTAGATAAACTCCGAGGTAGACAAATTAACTAA

mRNA sequence

ATGGGTTGCAGTGCAGTCTGGTCACGCTCCATGGTGTCTAAAATGGAGAGTGATGAGAATGCTGTGAAAAAAACACAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCACAATGTTAGGTGCATCGAGTGTGGTAGTCAATCCATTGAAGATTCACAAGCAGATATCGCGATTCTCCTCAGAAAGGTACCATTTCTTTTAGATAAACTCCGAGGTAGACAAATTAACTAA

Coding sequence (CDS)

ATGGGTTGCAGTGCAGTCTGGTCACGCTCCATGGTGTCTAAAATGGAGAGTGATGAGAATGCTGTGAAAAAAACACAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCACAATGTTAGGTGCATCGAGTGTGGTAGTCAATCCATTGAAGATTCACAAGCAGATATCGCGATTCTCCTCAGAAAGGTACCATTTCTTTTAGATAAACTCCGAGGTAGACAAATTAACTAA

Protein sequence

MGCSAVWSRSMVSKMESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLLDKLRGRQIN

Homology

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BLAST of Lsi02G028060 vs. ExPASy Swiss-Prot
Match: B8AFK5 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. indica OX=39946 GN=CCMH PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-13
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 19 ENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKV 64
          E  VK+ Q++E+RARNISHNVRC ECGSQSIEDSQADIAILLRK+
Sbjct: 4  EEDVKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKL 48

[Close]

BLAST of Lsi02G028060 vs. ExPASy Swiss-Prot
Match: Q6K7S7 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. japonica OX=39947 GN=CCMH PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-13
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 19 ENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKV 64
          E  VK+ Q++E+RARNISHNVRC ECGSQSIEDSQADIAILLRK+
Sbjct: 4  EEDVKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKL 48

[Close]

BLAST of Lsi02G028060 vs. ExPASy Swiss-Prot
Match: Q9XI46 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMH PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.8e-13
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKV 64
          ME  +   KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR++
Sbjct: 1  MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQL 49

[Close]

BLAST of Lsi02G028060 vs. ExPASy TrEMBL
Match: A0A6J1JTI4 (Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-15
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLLDKLR 72
          MESD +AVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRK+  + D++R
Sbjct: 1  MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKL--IRDEIR 55

[Close]

BLAST of Lsi02G028060 vs. ExPASy TrEMBL
Match: A0A6J1GPV4 (Cytochrome c-type biogenesis protein OS=Cucurbita moschata OX=3662 GN=LOC111456378 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-15
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLLDKLR 72
          MESD +AVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRK+  + D++R
Sbjct: 1  MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKL--IRDEIR 55

[Close]

BLAST of Lsi02G028060 vs. ExPASy TrEMBL
Match: A0A0A0L351 (Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-15
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLLDKLR 72
          ME+DE+A+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRK+  + D++R
Sbjct: 1  METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKL--IRDEIR 55

[Close]

BLAST of Lsi02G028060 vs. ExPASy TrEMBL
Match: A0A6J1DHL6 (Cytochrome c-type biogenesis protein OS=Momordica charantia OX=3673 GN=LOC111020546 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.5e-15
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLLDKLR 72
          MES+++AVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRK+  + D++R
Sbjct: 1  MESNDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKL--IRDEIR 55

[Close]

BLAST of Lsi02G028060 vs. ExPASy TrEMBL
Match: A0A1S4DZT6 (Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.3e-15
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLLDKLR 72
          ME DE+A+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRK+  + D++R
Sbjct: 1  MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKL--IRDEIR 55

[Close]

BLAST of Lsi02G028060 vs. NCBI nr
Match: XP_038904619.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904620.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904621.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida])

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-15
Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLLDKLR 72
          ME+DE+AVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRK+  + D++R
Sbjct: 1  METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKL--IRDEIR 55

[Close]

BLAST of Lsi02G028060 vs. NCBI nr
Match: XP_004149299.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >KGN56203.1 hypothetical protein Csa_010849 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-15
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLLDKLR 72
          ME+DE+A+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRK+  + D++R
Sbjct: 1  METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKL--IRDEIR 55

[Close]

BLAST of Lsi02G028060 vs. NCBI nr
Match: XP_022953979.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953980.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953981.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953983.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953984.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022992421.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992422.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992423.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992424.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992425.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_023549463.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549464.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549465.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549466.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >KAG7014070.1 Cytochrome c-type biogenesis CcmH-like mitochondrial protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-15
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLLDKLR 72
          MESD +AVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRK+  + D++R
Sbjct: 1  MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKL--IRDEIR 55

[Close]

BLAST of Lsi02G028060 vs. NCBI nr
Match: XP_022152937.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 5.1e-15
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLLDKLR 72
          MES+++AVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRK+  + D++R
Sbjct: 1  MESNDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKL--IRDEIR 55

[Close]

BLAST of Lsi02G028060 vs. NCBI nr
Match: XP_008452301.1 (PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_008452302.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_016901245.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >KAA0046887.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa] >TYK03260.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 6.7e-15
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKVPFLLDKLR 72
          ME DE+A+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRK+  + D++R
Sbjct: 1  MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKL--IRDEIR 55

[Close]

BLAST of Lsi02G028060 vs. TAIR 10
Match: AT1G15220.1 (cytochrome c biogenesis protein family )

HSP 1 Score: 75.1 bits (183), Expect = 2.7e-14
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKV 64
          ME  +   KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR++
Sbjct: 1  MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQL 49

[Close]

BLAST of Lsi02G028060 vs. TAIR 10
Match: AT1G15220.2 (cytochrome c biogenesis protein family )

HSP 1 Score: 75.1 bits (183), Expect = 2.7e-14
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 15 MESDENAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKV 64
          ME  +   KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR++
Sbjct: 1  MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQL 49

The following BLAST results are available for this feature:

BLAST of Lsi02G028060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8AFK5	2.9e-13	80.00	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
Q6K7S7	2.9e-13	80.00	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
Q9XI46	3.8e-13	73.47	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thal...	[more]

BLAST of Lsi02G028060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTI4	1.5e-15	84.21	Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733...	[more]
A0A6J1GPV4	1.5e-15	84.21	Cytochrome c-type biogenesis protein OS=Cucurbita moschata OX=3662 GN=LOC1114563...	[more]
A0A0A0L351	1.5e-15	82.46	Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 ...	[more]
A0A6J1DHL6	2.5e-15	82.46	Cytochrome c-type biogenesis protein OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A1S4DZT6	3.3e-15	82.46	Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=...	[more]

BLAST of Lsi02G028060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904619.1	1.4e-15	84.21	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida]...	[more]
XP_004149299.1	3.0e-15	82.46	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >...	[more]
XP_022953979.1	3.0e-15	84.21	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata...	[more]
XP_022152937.1	5.1e-15	82.46	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charanti...	[more]
XP_008452301.1	6.7e-15	82.46	PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis...	[more]

BLAST of Lsi02G028060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15220.1	2.7e-14	73.47	cytochrome c biogenesis protein family	[more]
AT1G15220.2	2.7e-14	73.47	cytochrome c biogenesis protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038297	CcmH/CycL/Ccl2/NrfF domain superfamily	GENE3D	1.10.8.640	Cytochrome C biogenesis protein	coord: 12..64 e-value: 8.8E-7 score: 30.8
IPR005616	CcmH/CycL/Ccl2/NrfF family	PFAM	PF03918	CcmH	coord: 15..62 e-value: 2.1E-9 score: 36.8
None	No IPR available	PANTHER	PTHR47601	FAMILY NOT NAMED	coord: 15..63
None	No IPR available	PANTHER	PTHR47601:SF1	CYTOCHROME C-TYPE BIOGENESIS CCMH-LIKE MITOCHONDRIAL PROTEIN	coord: 15..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G028060.1	Lsi02G028060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0032991	protein-containing complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity