Lsi02G027680 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G027680
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr02: 33942056 .. 33943440 (-)
RNA-Seq Expression	Lsi02G027680
Synteny	Lsi02G027680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGACATTGGTGTTGTTCATAGAAGTAGACGGGTTCAAGCAAGAATGCAGGCATCTCGACGGGCAGTCGGAGAAGGAGATCCCAGGCGTGACGGTGCATACGACGAAGCAGGAGCTGTAACAATCTTGAAAAGGTTCGGAATTGGTCATGGAGAGCGAGCTCAGCACCAAACAAGCCATTAAAGCCCATTTCATTATTGCCATACATTGGTTCAATTTGATTTGGTTGAATTAGTAATATTATTGATTTTCAAGAGGGGTACGTACATTGGTTCATTTTTAAACTAAATAAATTAAAGAATTTAGACATTTAGACAATTTTTTAAGTGAAAAATAGAATTAGACATTTTAAGAAAAATCTTTTTAATTTAAACATTTGTCCCGTATGTTTGTTCAACGAAATTAAATGCAAGTAGTTATTTGATTTTCTATTACGAAAAATTGCACAAATCATTTCTGAACTTTTAATTTGATCAACCACATAACTTTGTGGTTTGTTACAATTAAACTCATAAACTCTTCTAATTTGATTAATTAGTCCCGGAGTTTGTTAATTGTCGTAATTAGAGCCCGGAAGTTTGACTTCATTTAGCAGATGCGGATCATCAATTCATTGAACATGTTTGAGAGCAAGAATCCACACAGCTCCCCACTTCTTTCTCAGCTGCCATCAACAAAACCAAAGAAAACATCACACGTGAACCAAGCAATACTTTTTCATAAATAAATAATTATTAAAAAAATCGTCTAAACTTTTTTATACTCGTAATATTCCAAATAAAAATGTTAAGAAAAGCAAATTAGGGGAAAATACTTTTAGACATTATTTTTAGGTAAATTTTAGATAGATTAAAATGTTAAAATATTTACGGAAAATATAAAAAAGACACATAATATTAATAAACTTCTCATAGACTTTTATCATTTCTATCAACAACTATCTAAAACTTTAGAAATTCCTTATCTCACGATTAAAAATAAGAAAATATAGAAGAAAATCGTTTTGATTTCAATTTCTAAATTTAGTACTAAGATTTGAAAACAAACAAAATGAAAATAACACTCAAAACCTAGCATCAGAAAAAATATATCAAATAAGGGAGTGGAGATTTGGAACCTGGATTTTCCTTTGTGCTAAACTTGGTACACAAGGAAGTTGCACAGCCAAGCTTGCAGAAGAAGTGATTTTGTTGTGGCGACTGATCATGGAGCCTGGCGTTGTAATGAGACGGGGACATGCAAGTATGCAGGCATCTCGACGGGCAGTCGAAGAAGGAGACACCGGGCGTGATGGCGCATGTGATGAAGCAGGAATGGTAGCAATCGAAAAAATCGTAGGAATTGGCCATGGAGAGCGAGCAGAGCAGCAGCCAACCCATTAA

mRNA sequence

ATGGACGACATTGGTGTTGTTCATAGAAGTAGACGGGTTCAAGCAAGAATGCAGGCATCTCGACGGGCAGTCGGAGAAGGAGATCCCAGGCGTGACGGTGCATACGACGAAGCAGGAGCTGTAACAATCTTGAAAAGTTGCACAGCCAAGCTTGCAGAAGAAGTGATTTTGTTGTGGCGACTGATCATGGAGCCTGGCGTTGTAATGAGACGGGGACATGCAAGTATGCAGGCATCTCGACGGGCAGTCGAAGAAGGAGACACCGGGCGTGATGGCGCATGTGATGAAGCAGGAATGGTAGCAATCGAAAAAATCGTAGGAATTGGCCATGGAGAGCGAGCAGAGCAGCAGCCAACCCATTAA

Coding sequence (CDS)

ATGGACGACATTGGTGTTGTTCATAGAAGTAGACGGGTTCAAGCAAGAATGCAGGCATCTCGACGGGCAGTCGGAGAAGGAGATCCCAGGCGTGACGGTGCATACGACGAAGCAGGAGCTGTAACAATCTTGAAAAGTTGCACAGCCAAGCTTGCAGAAGAAGTGATTTTGTTGTGGCGACTGATCATGGAGCCTGGCGTTGTAATGAGACGGGGACATGCAAGTATGCAGGCATCTCGACGGGCAGTCGAAGAAGGAGACACCGGGCGTGATGGCGCATGTGATGAAGCAGGAATGGTAGCAATCGAAAAAATCGTAGGAATTGGCCATGGAGAGCGAGCAGAGCAGCAGCCAACCCATTAA

Protein sequence

MDDIGVVHRSRRVQARMQASRRAVGEGDPRRDGAYDEAGAVTILKSCTAKLAEEVILLWRLIMEPGVVMRRGHASMQASRRAVEEGDTGRDGACDEAGMVAIEKIVGIGHGERAEQQPTH

Homology

[Close]

BLAST of Lsi02G027680 vs. ExPASy TrEMBL
Match: A0A0A0K910 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441630 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.5e-10
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 46  SCTAKLAEEVILLWRLIMEPGVV--MRRGHASMQASRRAVEEGDTGRDGACDEAGMVAIE 105
           SCTAKLAEE+ILL   + + G+V   RR  AS+QAS+ AV EG+ G DGA DEAG VA  
Sbjct: 20  SCTAKLAEEMILLLLPMDDIGIVNRKRRDDASLQASQWAVGEGNAGCDGAYDEAGGVAFL 79

Query: 106 KIVGIGHGERAEQQPTH 121
           K  GI  GER +QQP+H
Sbjct: 80  KRGGISGGERGQQQPSH 96

[Close]

BLAST of Lsi02G027680 vs. ExPASy TrEMBL
Match: A0A5A7UVT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002590 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.9e-08
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 70  RRGHASMQASRRAVEEGDTGRDGACDEAGMVAIEKIVGIGHGERAEQQPTH 121
           RR  AS+QAS+RAV EGD GRDGA DEAG VA  K  GIG GER +QQP+H
Sbjct: 11  RRDDASLQASQRAVGEGDAGRDGAYDEAGGVAFLKRGGIGGGERGQQQPSH 61

[Close]

BLAST of Lsi02G027680 vs. NCBI nr
Match: KAA0058807.1 (hypothetical protein E6C27_scaffold339G002820 [Cucumis melo var. makuwa] >TYK10602.1 hypothetical protein E5676_scaffold459G002590 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-07
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 70  RRGHASMQASRRAVEEGDTGRDGACDEAGMVAIEKIVGIGHGERAEQQPTH 121
           RR  AS+QAS+RAV EGD GRDGA DEAG VA  K  GIG GER +QQP+H
Sbjct: 11  RRDDASLQASQRAVGEGDAGRDGAYDEAGGVAFLKRGGIGGGERGQQQPSH 61

The following BLAST results are available for this feature:

BLAST of Lsi02G027680 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G027680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K910	6.5e-10	58.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441630 PE=4 SV=1	[more]
A0A5A7UVT9	7.9e-08	68.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lsi02G027680 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058807.1	1.6e-07	68.63	hypothetical protein E6C27_scaffold339G002820 [Cucumis melo var. makuwa] >TYK106...	[more]

BLAST of Lsi02G027680 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G027680.1	Lsi02G027680.1	mRNA