Lsi02G027150 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G027150
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr02: 33489344 .. 33492196 (-)
RNA-Seq Expression	Lsi02G027150
Synteny	Lsi02G027150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATAACTTAAGAATCGTGGGTGGTTTCTCTCTCTTCGTAATGGCAACGCTCTCAAGCTCTCTCCACCGTTCTTCACAGTCCGTTACCGCCTCTTCAATCGCCCTTCCTCTCTGTTCAACCTTCCATACTCGGCCGGAAATCTGCTTCTCTTTGCATCGTCGCCGCCTTTCATATCTCTTGCTCTCCTCCGATTCTTCTGCTAAATCGGCCGTTTGCAGCGCAGCAGTACGGCCGCCACCGGACTCCGATCCGCCTCCCGAGGACGATCCGATTCGTCTAACAGGTTCCTATTCTTTGCTGATGTTATCTCCATTTAATTCGCTTAATTGACTGAATTGTTCCTGATAAGGCCTAAAAAGTTTAGTGCATAGAGCGTGGTAGTGTGTCTGCTTATTTGTAGTTCGTTTTTTCATCATAGGCGGAGAAGGCTACGTTATCTTTATTCATATGGAATGGCCTTCATAATCGAAAATGATAATTATTAGCTCCTGAATTTAGCTTGGCCTGTGCTAGTGGTGGTCCTCATCACTCGCAACAATTAGTAACAGTGTTATTTATCCATTTAAATTTCTGGTTGTTTAGAAGTCAAGTTAATCATCCATAAATATTATTCGTGTTCTTAGTCATCCGGAAATTTGCTAGGTCTTCGGATGCATATGTGCTTAGCCATAATATTTCTTATGTTGGAAGTTTGTTAATGCCCAATACGTTTTAAATGTGTCAAAAATCATACCGGAAAATAAATAATGGCATTTGGAGTTTGTGCGATTCTGGTGCAAATGCTACTACTCTTTGAACATTTTCATTAAGTCTACCAATTTCAGATGTCAATTGTTAAGAGTAATTCGTAAACTATATCTAAGTATTCATGTTAAGCTGCAAGTAGAAAGCCATTTCCCGCTTCCATGACAGTTATATCCTGTTTTCTGGTAATGGCTGTTTTCAGGATTCAACTTCCGAGTGTAAGATGAAGGAAGCGTCTTTTTTTCTGCTGGAGATTTTTTTTTCTTTAATGGTGTTAGATCACAATTACACCCAAATTTTCTAGTTGTTAAGCTTGGACAACATAATTTTTTCTTCAATTCATTTTCTAGCACTCTGGGAGATTGTGGTGATTTGAGAGTTATCTGGGTTTGCTACCTTAAATTTGTACTCTTTCCAAACCTCATTTTCGTTAATAGATCTTGAGTAGGACTAATTGGAATGTTCTCTGTAATTTTCTTGCAATTATAGGAGACTGCTTATCTTCATCTTTTCTGCTTATTTCTTAATAATGAATTTGGTCTTTTATTTAATAAAAAAGAAAGGTTGAATATGTGATCTAAGTAGATTGGGTGATTGTTGATTGTTGGTTTAATAATAAAGAAGCGTTTCTTTCTTATAATAAAAACCGAGTGACAGGGAAAGTGAAGGGAGAGCCTTTCTTAAGTTATCATATTTTAAGAGAACCATTTTAGGGTTGAATATGTTGATCGAAGTAGATAAGGTGAATGTTGACTGTTGGTTTAATAAAAAAGAATCTTTTCTTTCTCATATAATGAAAAGAAAGTGAAGGAAGAGTCTTCTATAAGTTGTCATTTTCGTTAGAGAGAATCATTTTAGGGTGAATATGTTGATCAAACGTCATAATTGATAAGATGATTGTTGACCATTTGTTTAGTGGAAAAATAATAGTTTCTTTCTTATTTAGTTTAACAAAAATAGAGAGATAAGGAAAGTGTAGGGAGAACCTTTCATAAGTTGTCGTCTTTTTAAGAGAGAATCATTTTAGCTTATGTTGATCAGAATAGACAACGAGATTATTAGACTGAAATTGTTGGTGATACTCAGGAATTCTACCATGTTGTTATATATTTTTAATGTTTGAGCTTGATACTATTTTTCTTGCTTGATAATTCATGTTGTAACTTATTCTGGATGTATTTGAATTGCTTTGGCACCATGTTCCCTTACTTCTCTTAATATCATTATTTGAGCAGGTTTTCCAGCAATTTTCTCAAAATTTCGGGACAGAGTACAAATTTTCCTTGCTGTGTTATTCTGGATGTCTCTCTTCTTCTGGACTTCTGCATTAGATGGAAAAAGTAAACCTAATAAGGGCTCTCGATTTAGACGATAGTTTCGTAAACAAGCATTCTTTTGTAAAGGATTGTAGGTTAATATAATAGTGTTAGGCTACTTGATTAAATCTAAAGATATACTTCAGCCTTTGACGAGGTAGATAAAGCTTGCTCCATGATGTTGATACCAAAGATGCAAGGCTGTATACCCTGTATATTGTGTAGCTGCAAAGGAGATACTGAATGGAATGGTTATAATAAATGAAAGTGAAACTGTCATGGAAAGTCGTATTTTGTATTTTATATTCTTATCAAGTGTGTTGAATATCTTGAATCCCACCCCCTCCCATCTTGAATAACATAATCAGGGGAAATGTTCATTAGGAAAGTAGCAGAGTTAAATGGTTGAAGACATTCTGTTGTAACTGACTAACCTTGTTCTCCTTTTTGGACGTGTCATTCTTACGCAGGGGTCAGACTAATCTTCTTTGGGTATTAAATTACAAATTTCTATAGATTGGTATTGGCTTTCCTTGACAGGAATTTGCTTGATGGATGTATAAGAATGGTCTACATGAGACTTGCAACATCAGAATGATGGGAGGGAATGATTGGTTCGTGCGATATTTAGAAGGGATTGCCACAATGTGTTTGACACGTTGCTAATAGTTCAATGTATGGCGAAGAACTAACTTTTTCTTGGTCATATTGTAATGTTCTAGGGTTGTGAAAAACTGAAAGTGATAGTTGGTTGGAGGAGAAGAGAAGTGATCTCTAATTATTGGATTATTA

mRNA sequence

GAATAACTTAAGAATCGTGGGTGGTTTCTCTCTCTTCGTAATGGCAACGCTCTCAAGCTCTCTCCACCGTTCTTCACAGTCCGTTACCGCCTCTTCAATCGCCCTTCCTCTCTGTTCAACCTTCCATACTCGGCCGGAAATCTGCTTCTCTTTGCATCGTCGCCGCCTTTCATATCTCTTGCTCTCCTCCGATTCTTCTGCTAAATCGGCCGTTTGCAGCGCAGCAGTACGGCCGCCACCGGACTCCGATCCGCCTCCCGAGGACGATCCGATTCGTCTAACAGGTTTTCCAGCAATTTTCTCAAAATTTCGGGACAGAGTACAAATTTTCCTTGCTGTGTTATTCTGGATGTCTCTCTTCTTCTGGACTTCTGCATTAGATGGAAAAAGTAAACCTAATAAGGGCTCTCGATTTAGACGATAGTTTCGTAAACAAGCATTCTTTTGTAAAGGATTGTAGGTTAATATAATAGTGTTAGGCTACTTGATTAAATCTAAAGATATACTTCAGCCTTTGACGAGGTAGATAAAGCTTGCTCCATGATGTTGATACCAAAGATGCAAGGCTGTATACCCTGTATATTGTGTAGCTGCAAAGGAGATACTGAATGGAATGGTTATAATAAATGAAAGTGAAACTGTCATGGAAAGTCGTATTTTGTATTTTATATTCTTATCAAGTGTGTTGAATATCTTGAATCCCACCCCCTCCCATCTTGAATAACATAATCAGGGGAAATGTTCATTAGGAAAGTAGCAGAGTTAAATGGTTGAAGACATTCTGTTGTAACTGACTAACCTTGTTCTCCTTTTTGGACGTGTCATTCTTACGCAGGGGTCAGACTAATCTTCTTTGGGTATTAAATTACAAATTTCTATAGATTGGTATTGGCTTTCCTTGACAGGAATTTGCTTGATGGATGTATAAGAATGGTCTACATGAGACTTGCAACATCAGAATGATGGGAGGGAATGATTGGTTCGTGCGATATTTAGAAGGGATTGCCACAATGTGTTTGACACGTTGCTAATAGTTCAATGTATGGCGAAGAACTAACTTTTTCTTGGTCATATTGTAATGTTCTAGGGTTGTGAAAAACTGAAAGTGATAGTTGGTTGGAGGAGAAGAGAAGTGATCTCTAATTATTGGATTATTA

Coding sequence (CDS)

ATGGCAACGCTCTCAAGCTCTCTCCACCGTTCTTCACAGTCCGTTACCGCCTCTTCAATCGCCCTTCCTCTCTGTTCAACCTTCCATACTCGGCCGGAAATCTGCTTCTCTTTGCATCGTCGCCGCCTTTCATATCTCTTGCTCTCCTCCGATTCTTCTGCTAAATCGGCCGTTTGCAGCGCAGCAGTACGGCCGCCACCGGACTCCGATCCGCCTCCCGAGGACGATCCGATTCGTCTAACAGGTTTTCCAGCAATTTTCTCAAAATTTCGGGACAGAGTACAAATTTTCCTTGCTGTGTTATTCTGGATGTCTCTCTTCTTCTGGACTTCTGCATTAGATGGAAAAAGTAAACCTAATAAGGGCTCTCGATTTAGACGATAG

Protein sequence

MATLSSSLHRSSQSVTASSIALPLCSTFHTRPEICFSLHRRRLSYLLLSSDSSAKSAVCSAAVRPPPDSDPPPEDDPIRLTGFPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGKSKPNKGSRFRR

Homology

[Close]

BLAST of Lsi02G027150 vs. ExPASy TrEMBL
Match: A0A0A0K8T0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432560 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 8.6e-53
Identity = 109/127 (85.83%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MATLSSSLHRSSQSVTASSIALPLCSTFHTRPEICFSLHRRRLSYLLLSSDSSAKSAVCS 60
           MA LS+SLHRSSQSV ASSIALPLCSTFH R EICFSLHRRRLS L  SS+S A+S VCS
Sbjct: 1   MAILSTSLHRSSQSVAASSIALPLCSTFHLRSEICFSLHRRRLSPLFFSSNSYAESVVCS 60

Query: 61  AAVRPPPDSDPPPEDDPIRLTGFPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGKSKPN 120
           AAVRPPPDSDPPPE+DP+RLTG PAIFSKFRDRVQIFLAVLFWMSLFFWTSALDG+++PN
Sbjct: 61  AAVRPPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGRNRPN 120

Query: 121 KGSRFRR 128
           KGSRFRR
Sbjct: 121 KGSRFRR 127

[Close]

BLAST of Lsi02G027150 vs. ExPASy TrEMBL
Match: A0A1S3CE06 (uncharacterized protein LOC103499798 OS=Cucumis melo OX=3656 GN=LOC103499798 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.6e-49
Identity = 104/123 (84.55%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 5   SSSLHRSSQSVTASSIALPLCSTFHTRPEICFSLHRRRLSYLLLSSDSSAKSAVCSAAVR 64
           S+SLHRSS SV ASSIALPLCSTFH R +ICFS  RRRLS L  SS+S AKS VCSAAVR
Sbjct: 3   STSLHRSSHSVAASSIALPLCSTFHFRSKICFSPPRRRLSPLFFSSNSYAKSVVCSAAVR 62

Query: 65  PPPDSDPPPEDDPIRLTGFPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGKSKPNKGSR 124
           PPPDSDPPPE+DP+RLTG PAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGK++PNKGSR
Sbjct: 63  PPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGKNRPNKGSR 122

Query: 125 FRR 128
           FRR
Sbjct: 123 FRR 125

[Close]

BLAST of Lsi02G027150 vs. ExPASy TrEMBL
Match: A0A6J1KZ93 (uncharacterized protein LOC111497700 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497700 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.2e-41
Identity = 94/124 (75.81%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 5   SSSLHRSSQSVTASSIALPLCSTFHTRPEICFS-LHRRRLSYLLLSSDSSAKSAVCSAAV 64
           S++L+  S++VTA +IA+PL S+FH RPEI FS LH RR S LLLS +  AKSAVC+AAV
Sbjct: 9   SNALYHPSRAVTAPAIAIPLFSSFHARPEISFSPLHHRR-SSLLLSFNPCAKSAVCTAAV 68

Query: 65  RPPPDSDPPPEDDPIRLTGFPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGKSKPNKGS 124
           RPPPDSDPPP++DPIRL GFPAIFSKF DRVQIF AVLFWMSLFFWTSALDGK++PNKGS
Sbjct: 69  RPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGKNRPNKGS 128

Query: 125 RFRR 128
           RFRR
Sbjct: 129 RFRR 131

[Close]

BLAST of Lsi02G027150 vs. ExPASy TrEMBL
Match: A0A6J1H516 (uncharacterized protein LOC111460643 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460643 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41
Identity = 94/124 (75.81%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 5   SSSLHRSSQSVTASSIALPLCSTFHTRPEICFS-LHRRRLSYLLLSSDSSAKSAVCSAAV 64
           S++L+  S++VTA +IA+PL S+FH  PEI FS LH RR S LLLSS+  AKSAVC+AAV
Sbjct: 9   SNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRR-SSLLLSSNPRAKSAVCTAAV 68

Query: 65  RPPPDSDPPPEDDPIRLTGFPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGKSKPNKGS 124
           RPPPDSDPPP++DPIRL GFPAIFSKF DRVQIF AVLFWMSLFFWTSALDGK++PNKGS
Sbjct: 69  RPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGKNRPNKGS 128

Query: 125 RFRR 128
           RFRR
Sbjct: 129 RFRR 131

[Close]

BLAST of Lsi02G027150 vs. ExPASy TrEMBL
Match: A0A6J1CXJ1 (uncharacterized protein LOC111015178 OS=Momordica charantia OX=3673 GN=LOC111015178 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.6e-41
Identity = 89/122 (72.95%), Postives = 99/122 (81.15%), Query Frame = 0


Query: 6   SSLHRSSQSVTASSIALPLCSTFHTRPEICFSLHRRRLSYLLLSSDSSAKSAVCSAAVRP 65
           S  + S+ S+TAS+IA+PLCS F   PEICFS H RR S LLLSS+  A SA CSAAVRP
Sbjct: 2   SIFYHSTHSLTASTIAVPLCSRFRVPPEICFSSHHRRRSSLLLSSNPYASSAACSAAVRP 61

Query: 66  PPDSDPPPEDDPIRLTGFPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGKSKPNKGSRF 125
           PPDS PPP+ DPIR  GFPA FSKF+DRVQIF AVLFWMSLFFWTS LDGK++PNKGSRF
Sbjct: 62  PPDSGPPPDKDPIRAKGFPAFFSKFQDRVQIFFAVLFWMSLFFWTSVLDGKNRPNKGSRF 121

Query: 126 RR 128
           RR
Sbjct: 122 RR 123

[Close]

BLAST of Lsi02G027150 vs. NCBI nr
Match: XP_038899182.1 (uncharacterized protein LOC120086544 [Benincasa hispida])

HSP 1 Score: 218.0 bits (554), Expect = 4.7e-53
Identity = 113/127 (88.98%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MATLSSSLHRSSQSVTASSIALPLCSTFHTRPEICFSLHRRRLSYLLLSSDSSAKSAVCS 60
           MATL  SLHRSSQSVTASSIA+PLCSTFH RPEICFS HRRRLS LLLSSDS  KSAVCS
Sbjct: 1   MATL--SLHRSSQSVTASSIAVPLCSTFHARPEICFSSHRRRLSPLLLSSDSCHKSAVCS 60

Query: 61  AAVRPPPDSDPPPEDDPIRLTGFPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGKSKPN 120
           AAVRPPPDSDPPPE+DPIRL GFPAI SKFRDRVQIF AVLFWMSLFFWTSALDGK++PN
Sbjct: 61  AAVRPPPDSDPPPEEDPIRLKGFPAILSKFRDRVQIFFAVLFWMSLFFWTSALDGKNRPN 120

Query: 121 KGSRFRR 128
           KGSRFRR
Sbjct: 121 KGSRFRR 125

[Close]

BLAST of Lsi02G027150 vs. NCBI nr
Match: XP_004135861.1 (uncharacterized protein LOC101209839 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 1.8e-52
Identity = 109/127 (85.83%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MATLSSSLHRSSQSVTASSIALPLCSTFHTRPEICFSLHRRRLSYLLLSSDSSAKSAVCS 60
           MA LS+SLHRSSQSV ASSIALPLCSTFH R EICFSLHRRRLS L  SS+S A+S VCS
Sbjct: 1   MAILSTSLHRSSQSVAASSIALPLCSTFHLRSEICFSLHRRRLSPLFFSSNSYAESVVCS 60

Query: 61  AAVRPPPDSDPPPEDDPIRLTGFPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGKSKPN 120
           AAVRPPPDSDPPPE+DP+RLTG PAIFSKFRDRVQIFLAVLFWMSLFFWTSALDG+++PN
Sbjct: 61  AAVRPPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGRNRPN 120

Query: 121 KGSRFRR 128
           KGSRFRR
Sbjct: 121 KGSRFRR 127

[Close]

BLAST of Lsi02G027150 vs. NCBI nr
Match: XP_008461116.1 (PREDICTED: uncharacterized protein LOC103499798 [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 5.3e-49
Identity = 104/123 (84.55%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 5   SSSLHRSSQSVTASSIALPLCSTFHTRPEICFSLHRRRLSYLLLSSDSSAKSAVCSAAVR 64
           S+SLHRSS SV ASSIALPLCSTFH R +ICFS  RRRLS L  SS+S AKS VCSAAVR
Sbjct: 3   STSLHRSSHSVAASSIALPLCSTFHFRSKICFSPPRRRLSPLFFSSNSYAKSVVCSAAVR 62

Query: 65  PPPDSDPPPEDDPIRLTGFPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGKSKPNKGSR 124
           PPPDSDPPPE+DP+RLTG PAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGK++PNKGSR
Sbjct: 63  PPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGKNRPNKGSR 122

Query: 125 FRR 128
           FRR
Sbjct: 123 FRR 125

[Close]

BLAST of Lsi02G027150 vs. NCBI nr
Match: XP_023004358.1 (uncharacterized protein LOC111497700 isoform X1 [Cucurbita maxima])

HSP 1 Score: 179.1 bits (453), Expect = 2.4e-41
Identity = 94/124 (75.81%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 5   SSSLHRSSQSVTASSIALPLCSTFHTRPEICFS-LHRRRLSYLLLSSDSSAKSAVCSAAV 64
           S++L+  S++VTA +IA+PL S+FH RPEI FS LH RR S LLLS +  AKSAVC+AAV
Sbjct: 9   SNALYHPSRAVTAPAIAIPLFSSFHARPEISFSPLHHRR-SSLLLSFNPCAKSAVCTAAV 68

Query: 65  RPPPDSDPPPEDDPIRLTGFPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGKSKPNKGS 124
           RPPPDSDPPP++DPIRL GFPAIFSKF DRVQIF AVLFWMSLFFWTSALDGK++PNKGS
Sbjct: 69  RPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGKNRPNKGS 128

Query: 125 RFRR 128
           RFRR
Sbjct: 129 RFRR 131

[Close]

BLAST of Lsi02G027150 vs. NCBI nr
Match: KAG6593392.1 (hypothetical protein SDJN03_12868, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025739.1 hypothetical protein SDJN02_12237, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178.7 bits (452), Expect = 3.1e-41
Identity = 94/124 (75.81%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 5   SSSLHRSSQSVTASSIALPLCSTFHTRPEICFS-LHRRRLSYLLLSSDSSAKSAVCSAAV 64
           S++L+  S++VTA +IA+PL S+FH  PEI FS LH RR S LLLSS+  AKSAVC+AAV
Sbjct: 9   SNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRR-SSLLLSSNPCAKSAVCTAAV 68

Query: 65  RPPPDSDPPPEDDPIRLTGFPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGKSKPNKGS 124
           RPPPDSDPPP++DPIRL GFPAIFSKF DRVQIF AVLFWMSLFFWTSALDGK++PNKGS
Sbjct: 69  RPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGKNRPNKGS 128

Query: 125 RFRR 128
           RFRR
Sbjct: 129 RFRR 131

[Close]

BLAST of Lsi02G027150 vs. TAIR 10
Match: AT3G15780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52550.1); Has 20 Blast hits to 20 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-13
Identity = 40/93 (43.01%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 36  FSLHRRRLSYLLLSSDSSAKSAVCSAAVRPPPDSDPPPEDDPIRLTGFPAIFSKFRDRVQ 95
           + LHRR  + +LL+S    +    +     PP  DPPP +D  +L G     ++ +DRV+
Sbjct: 27  YHLHRR--NTVLLASPRRLRRLAVAGGPPSPPGPDPPPPEDTTQLEGLVGAVTRVQDRVK 86

Query: 96  IFLAVLFWMSLFFWTSALD--GKSKPNKGSRFR 127
           IFLAV FWM LFFW +  D  GK K  KGSRF+
Sbjct: 87  IFLAVFFWMFLFFWVTVTDGTGKGKGKKGSRFK 117

[Close]

BLAST of Lsi02G027150 vs. TAIR 10
Match: AT1G52550.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15780.1); Has 53 Blast hits to 51 proteins in 18 species: Archae - 0; Bacteria - 8; Metazoa - 4; Fungi - 0; Plants - 23; Viruses - 8; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 6.1e-11
Identity = 43/126 (34.13%), Postives = 62/126 (49.21%), Query Frame = 0


Query: 12  SQSVTASSIALPLCSTFHTRPEICFSLHRR------RLSYLLLSSDSSAKSAVCSAAVRP 71
           + + ++S++ L  C   H  P   F    R      +  +L+ +     + AV       
Sbjct: 6   ANTTSSSNLYLHRCRKNHPLPSPSFFSPFRSSPLPSQTLFLVPTPKPVRRIAVAPLGPPT 65

Query: 72  PPDSDPPPEDDPIRLTGFPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGK-----SKPN 127
           PP  DPPP  +   LT    + S  +DRV+IFL+VL W+SLFFW SAL G+      K  
Sbjct: 66  PPSPDPPPPKNTTELTSLVGVASMIQDRVKIFLSVLIWISLFFWASALQGRGSKGNGKGK 125

The following BLAST results are available for this feature:

BLAST of Lsi02G027150 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G027150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8T0	8.6e-53	85.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432560 PE=4 SV=1	[more]
A0A1S3CE06	2.6e-49	84.55	uncharacterized protein LOC103499798 OS=Cucumis melo OX=3656 GN=LOC103499798 PE=...	[more]
A0A6J1KZ93	1.2e-41	75.81	uncharacterized protein LOC111497700 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1H516	1.5e-41	75.81	uncharacterized protein LOC111460643 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1CXJ1	2.6e-41	72.95	uncharacterized protein LOC111015178 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]

BLAST of Lsi02G027150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899182.1	4.7e-53	88.98	uncharacterized protein LOC120086544 [Benincasa hispida]	[more]
XP_004135861.1	1.8e-52	85.83	uncharacterized protein LOC101209839 [Cucumis sativus]	[more]
XP_008461116.1	5.3e-49	84.55	PREDICTED: uncharacterized protein LOC103499798 [Cucumis melo]	[more]
XP_023004358.1	2.4e-41	75.81	uncharacterized protein LOC111497700 isoform X1 [Cucurbita maxima]	[more]
KAG6593392.1	3.1e-41	75.81	hypothetical protein SDJN03_12868, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi02G027150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15780.1	1.7e-13	43.01	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G52550.1	6.1e-11	34.13	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37706	TRANSMEMBRANE PROTEIN	coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G027150.1	Lsi02G027150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane