Lsi02G027100 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G027100
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Cucumber peeling cupredoxin-like
Location	chr02: 33453090 .. 33453296 (-)
RNA-Seq Expression	Lsi02G027100
Synteny	Lsi02G027100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGGAGGAGTTGGTTTAGTTTTGGGTTTAATTGTGGTGGATTTTGTTCACCATGCCATCGCTCAGACGGTTCATGTCGTCGGAGACTCCACCGGTTGGACAGTTCCGCAGGGCGGCGCTGCTTTCTATTCGGACTGGGCTTCTAGAAACAACTTCGCTATTGGCGATTATCTAAGTATGAATCTTCTCTCTATCCTTCCTTAA

mRNA sequence

ATGGTCGGAGGAGTTGGTTTAGTTTTGGGTTTAATTGTGGTGGATTTTGTTCACCATGCCATCGCTCAGACGGTTCATGTCGTCGGAGACTCCACCGGTTGGACAGTTCCGCAGGGCGGCGCTGCTTTCTATTCGGACTGGGCTTCTAGAAACAACTTCGCTATTGGCGATTATCTAAGTATGAATCTTCTCTCTATCCTTCCTTAA

Coding sequence (CDS)

ATGGTCGGAGGAGTTGGTTTAGTTTTGGGTTTAATTGTGGTGGATTTTGTTCACCATGCCATCGCTCAGACGGTTCATGTCGTCGGAGACTCCACCGGTTGGACAGTTCCGCAGGGCGGCGCTGCTTTCTATTCGGACTGGGCTTCTAGAAACAACTTCGCTATTGGCGATTATCTAAGTATGAATCTTCTCTCTATCCTTCCTTAA

Protein sequence

MVGGVGLVLGLIVVDFVHHAIAQTVHVVGDSTGWTVPQGGAAFYSDWASRNNFAIGDYLSMNLLSILP

Homology

[Close]

BLAST of Lsi02G027100 vs. ExPASy Swiss-Prot
Match: P29602 (Cucumber peeling cupredoxin OS=Cucumis sativus OX=3659 PE=1 SV=3)

HSP 1 Score: 48.5 bits (114), Expect = 3.4e-05
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 24 TVHVVGDSTGWTVPQGGAAFYSDWASRNNFAIGDYLSMN 63
          TVH+VGD+TGW+VP     FYS WA+   F +GD L  N
Sbjct: 3  TVHIVGDNTGWSVP-SSPNFYSQWAAGKTFRVGDSLQFN 40

[Close]

BLAST of Lsi02G027100 vs. ExPASy TrEMBL
Match: A0A0A0KBU0 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432480 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.9e-19
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 1  MVGGVGLVLGLIVVDFVHHAIAQTVHVVGDSTGWTVPQGGAAFYSDWASRNNFAIGDYLS 60
          M G VG+VLGLI V FVHHA AQT+HVVGDS GWTVPQGGAAFYSDWASRNNF++GD L+
Sbjct: 1  MSGEVGIVLGLIAVVFVHHATAQTIHVVGDSDGWTVPQGGAAFYSDWASRNNFSVGDSLT 60

Query: 61 MN 63
           N
Sbjct: 61 FN 62

[Close]

BLAST of Lsi02G027100 vs. ExPASy TrEMBL
Match: A0A0A0KA53 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432490 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 3  GGVGLVLGLIVVDFVHHAIAQTVHVVGDSTGWTVPQGGAAFYSDWASRNNFAIGDYLSMN 62
          G +GLVLGLI V FVH A AQTV VVGDSTGWTVP  GAAFYS+WAS+ NFAIGDYL+ N
Sbjct: 4  GIIGLVLGLIAVVFVHQATAQTVRVVGDSTGWTVPMNGAAFYSEWASKFNFAIGDYLTFN 63

[Close]

BLAST of Lsi02G027100 vs. ExPASy TrEMBL
Match: A0A5D3CH70 (Cucumber peeling cupredoxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001970 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.5e-16
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 3  GGVGLVLGLIVVDFVHHAIAQTVHVVGDSTGWTVPQGGAAFYSDWASRNNFAIGDYLSMN 62
          G +GLVLGLI V  +H A AQTV VVGDSTGWTVP+GGAAFYS+WAS+ NF+IGDYL+ N
Sbjct: 4  GIIGLVLGLIAVVLIHQATAQTVRVVGDSTGWTVPKGGAAFYSEWASKFNFSIGDYLTFN 63

[Close]

BLAST of Lsi02G027100 vs. ExPASy TrEMBL
Match: A0A5A7UZ00 (Cucumber peeling cupredoxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G002210 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.5e-16
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 3  GGVGLVLGLIVVDFVHHAIAQTVHVVGDSTGWTVPQGGAAFYSDWASRNNFAIGDYLSMN 62
          G +GLVLGLI V  +H A AQTV VVGDSTGWTVP+GGAAFYS+WAS+ NF+IGDYL+ N
Sbjct: 4  GIIGLVLGLIAVVLIHQATAQTVRVVGDSTGWTVPKGGAAFYSEWASKFNFSIGDYLTFN 63

[Close]

BLAST of Lsi02G027100 vs. ExPASy TrEMBL
Match: A0A1S3CEF8 (cucumber peeling cupredoxin-like OS=Cucumis melo OX=3656 GN=LOC103499804 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.9e-15
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 3  GGVGLVLGLIVVDFVHHAIAQTVHVVGDSTGWTVPQGGAAFYSDWASRNNFAIGDYL 60
          G +GLVLGLI V  +H A AQTV VVGDSTGWTVP+GGAAFYS+WAS+ NF+IGDYL
Sbjct: 4  GIIGLVLGLIAVVLIHQATAQTVRVVGDSTGWTVPKGGAAFYSEWASKFNFSIGDYL 60

[Close]

BLAST of Lsi02G027100 vs. NCBI nr
Match: XP_038899076.1 (cucumber peeling cupredoxin-like [Benincasa hispida])

HSP 1 Score: 104.8 bits (260), Expect = 3.1e-19
Identity = 52/65 (80.00%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 1  MVGGVGLVLGLIVVDFVHHAIAQTVHVVGDSTGWTVPQGGAAFYSDWASRNNFAIGDYLS 60
          M GGVGLVLGLI V FVHH  AQTV VVGDSTGWTVPQGGAAFYSDWAS+N F IGDYL+
Sbjct: 1  MGGGVGLVLGLIAVVFVHHPTAQTVRVVGDSTGWTVPQGGAAFYSDWASKNYFTIGDYLT 60

Query: 61 MNLLS 66
           N  S
Sbjct: 61 FNFES 65

[Close]

BLAST of Lsi02G027100 vs. NCBI nr
Match: XP_004136088.1 (cucumber peeling cupredoxin-like [Cucumis sativus] >KGN45266.1 hypothetical protein Csa_016411 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 4.0e-19
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 1  MVGGVGLVLGLIVVDFVHHAIAQTVHVVGDSTGWTVPQGGAAFYSDWASRNNFAIGDYLS 60
          M G VG+VLGLI V FVHHA AQT+HVVGDS GWTVPQGGAAFYSDWASRNNF++GD L+
Sbjct: 1  MSGEVGIVLGLIAVVFVHHATAQTIHVVGDSDGWTVPQGGAAFYSDWASRNNFSVGDSLT 60

Query: 61 MN 63
           N
Sbjct: 61 FN 62

[Close]

BLAST of Lsi02G027100 vs. NCBI nr
Match: XP_038899418.1 (cucumber peeling cupredoxin-like [Benincasa hispida])

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-16
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 4  GVGLVLGLIVVDFVHHAIAQTVHVVGDSTGWTVPQGGAAFYSDWASRNNFAIGDYLSMN 63
          GVGLVLGLI V FVHHA  +TVHVVG+S GWTVPQGGAAFYSDWA+RNNF I D L+ N
Sbjct: 4  GVGLVLGLIAVVFVHHATGETVHVVGNSDGWTVPQGGAAFYSDWAARNNFFIRDSLTFN 62

[Close]

BLAST of Lsi02G027100 vs. NCBI nr
Match: XP_011659524.1 (cucumber peeling cupredoxin-like [Cucumis sativus] >KGN45267.1 hypothetical protein Csa_016430 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 4.2e-16
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 3  GGVGLVLGLIVVDFVHHAIAQTVHVVGDSTGWTVPQGGAAFYSDWASRNNFAIGDYLSMN 62
          G +GLVLGLI V FVH A AQTV VVGDSTGWTVP  GAAFYS+WAS+ NFAIGDYL+ N
Sbjct: 4  GIIGLVLGLIAVVFVHQATAQTVRVVGDSTGWTVPMNGAAFYSEWASKFNFAIGDYLTFN 63

[Close]

BLAST of Lsi02G027100 vs. NCBI nr
Match: TYK10544.1 (cucumber peeling cupredoxin-like [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 9.3e-16
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 3  GGVGLVLGLIVVDFVHHAIAQTVHVVGDSTGWTVPQGGAAFYSDWASRNNFAIGDYLSMN 62
          G +GLVLGLI V  +H A AQTV VVGDSTGWTVP+GGAAFYS+WAS+ NF+IGDYL+ N
Sbjct: 4  GIIGLVLGLIAVVLIHQATAQTVRVVGDSTGWTVPKGGAAFYSEWASKFNFSIGDYLTFN 63

The following BLAST results are available for this feature:

BLAST of Lsi02G027100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29602	3.4e-05	53.85	Cucumber peeling cupredoxin OS=Cucumis sativus OX=3659 PE=1 SV=3	[more]

BLAST of Lsi02G027100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBU0	1.9e-19	79.03	Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432480...	[more]
A0A0A0KA53	2.0e-16	76.67	Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432490...	[more]
A0A5D3CH70	4.5e-16	73.33	Cucumber peeling cupredoxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7UZ00	4.5e-16	73.33	Cucumber peeling cupredoxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3CEF8	2.9e-15	75.44	cucumber peeling cupredoxin-like OS=Cucumis melo OX=3656 GN=LOC103499804 PE=4 SV...	[more]

BLAST of Lsi02G027100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899076.1	3.1e-19	80.00	cucumber peeling cupredoxin-like [Benincasa hispida]	[more]
XP_004136088.1	4.0e-19	79.03	cucumber peeling cupredoxin-like [Cucumis sativus] >KGN45266.1 hypothetical prot...	[more]
XP_038899418.1	1.4e-16	77.97	cucumber peeling cupredoxin-like [Benincasa hispida]	[more]
XP_011659524.1	4.2e-16	76.67	cucumber peeling cupredoxin-like [Cucumis sativus] >KGN45267.1 hypothetical prot...	[more]
TYK10544.1	9.3e-16	73.33	cucumber peeling cupredoxin-like [Cucumis melo var. makuwa]	[more]

BLAST of Lsi02G027100 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 21..65 e-value: 6.6E-9 score: 37.9
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 24..60
IPR039391	Phytocyanin	PANTHER	PTHR33021	BLUE COPPER PROTEIN	coord: 12..62
None	No IPR available	PANTHER	PTHR33021:SF368	PEELING CUPREDOXIN, PUTATIVE-RELATED	coord: 12..62
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 24..68 score: 16.230013

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G027100.1	Lsi02G027100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0046658	anchored component of plasma membrane
molecular_function	GO:0009055	electron transfer activity