Lsi02G027000 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G027000
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr02: 33394617 .. 33396526 (+)
RNA-Seq ExpressionLsi02G027000
SyntenyLsi02G027000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATTCGATTATGGAAATTCATAATTGCATTTTAGGGACGCTATACAACTATTTTTTTTTAAGTGTCTTTTGTTAAACCCATATATTTAGAAAGTTTGTATATATATGTGGTATATGTATATAAATGGTATAATTTGGAAGAAAGAAAACAACAAATATATTTGTTGGTACCGGAAATTTGCATGCATCTGTCGCACCGCAAGCCCTTCATGGGCTATCTATCGTCCTACTATTTGCATCAATGTGGTGTCGAGTCGATCATTAAAATAGTACAAGAAGTGTATAGTTTATCAAATAAGTGGAAATAATATTAATTGGAGAAGAAACAACAATGCAAGAGTTTGAACACACTCTGATACCATCTTAAAATGTTGATTGATCCAAAAAAGCTTAAGTTAGTGGATGGAGGCAAATTTAATTACATATTATCTAACAACTTTTATAATTCATGTTCAAATCAAACGCTCAAATGATGTTCCTAATGTAATTTTAATCAAACTATAGGGATGAATTATAACTTTTAAACCACATAAACTAAATTATAAGCTTTTTTCGAACTGGAGGATCAATTTGTAATGTAACAAATTTATATTTAGCATATATTAAAAATAAAAATAATAAAAGAAAATGTCTATTAAAACCATTGGTTCCCAACCTCAAAACTATCATGGAAGCAATGGTTAGGTCAGCTGTGCTCATTTTCTAATTTATCATATGCAATTGCATTTCTAAAAAAATTGCTCGTGTATAAAAAAAAACACACACACAAGCGTAATAGGTTGTGCTCATTTTCTAATTTGTCACATGCAATCTCATTTTTTTAAAAAAAAATGTCTTGTGCATAAAAAAAACAAACGTAATGTATCAAGCAAGCTACAGTTCTTCAGGAAAGATATGAAGAGATTTTCAGGGAGCACAACATCGACAGAGATTAATTCGTCATTCCATTTATTCATTAGTTCATCAACATAGATTTTCAGAGAGCTCAACATCGTTAACTTTTTAAAACTAAAAAACAAAAGAAAAGCAGTTCCATCTAAATTATTTCGTAATTTATTCAATTCATTGTCTCGTCTGTAAGTGCATTTGCATATAGTGATAAGCTTCCTTGGCTCAACGTGTTTGATTCAAGTTATTGTTATTTAATTTCATAGTCATAAAGAAAGTCTCTATGAATTCTCGTACCTTGCTTTTAATGCGAAGTCGTTCTTCATCACTTAACAGCTTCTCTCGTATTGTTGTGGTGATGCTCTTTAAGGTGATTTCAATTCTTTTCACGCACTTAATGACATTCTGTGTTGTAATGTTAGAGTCCATACATAGTTATAAATATCAACAGCAAACTTTTATAATAAAGATATGTTTTTAAATTTTACATTAGCACGCGATTTGCACGTAATAATAAACTAGTTTTTCAAAATATAGGAACGTTTGCACTTACACATCACATTTTAAGAAACAACAACAGCCGTTAGATCAACCGAGCTCAACAAGATGATATTAACGGTGGGCGTAGCACATTAGAACCTTAGAATAACGGAATAAGGGGAAAGTTTCGAAGCTTCCATCACGGTGGTTGAACTCGCCAAAGTTGGGAAATCCACTGTACAGAAAAAAAAAAAAAAATAGGGGAATTCGGATCCTTACCGGACCCGACCCGCCATAGTTCTCAGGTCGACGGCGCTGTTCCTACTCGCATCACAGCTTCAGAATCGTCCAACATCCATTGGCAACTACGGTCAAGATCTCACGTTCTTCATCAATGTTCTGTAATTCCCTTCAATTCTCTCTCTTTTCTTTACTTTTAACTGTCCTCCAGGGTTTAGTTTTATGTTGTCATTTTCTGTCCGGGATGTACTTTGAACTCCCTTTTGCGTATATTGCATTCCGGGAAGGGGAAAGTTGA

mRNA sequence

ATGGGGGAATTCGGATCCTTACCGGACCCGACCCGCCATAGTTCTCAGGTCGACGGCGCTGTTCCTACTCGCATCACAGCTTCAGAATCGTCCAACATCCATTGGCAACTACGGTCAAGATCTCACGTTCTTCATCAATGTTCTGGTTTAGTTTTATGTTGTCATTTTCTGTCCGGGATGTACTTTGAACTCCCTTTTGCGTATATTGCATTCCGGGAAGGGGAAAGTTGA

Coding sequence (CDS)

ATGGGGGAATTCGGATCCTTACCGGACCCGACCCGCCATAGTTCTCAGGTCGACGGCGCTGTTCCTACTCGCATCACAGCTTCAGAATCGTCCAACATCCATTGGCAACTACGGTCAAGATCTCACGTTCTTCATCAATGTTCTGGTTTAGTTTTATGTTGTCATTTTCTGTCCGGGATGTACTTTGAACTCCCTTTTGCGTATATTGCATTCCGGGAAGGGGAAAGTTGA

Protein sequence

MGEFGSLPDPTRHSSQVDGAVPTRITASESSNIHWQLRSRSHVLHQCSGLVLCCHFLSGMYFELPFAYIAFREGES
Homology
[Close]
BLAST of Lsi02G027000 vs. ExPASy TrEMBL
Match: A0A0A0K6X3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432400 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.5e-09
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 34  HWQLRSRSHVLHQCSGLVLCCHFLSGMYFELPFAY 69
           +WQLR RSH+LHQCSGL  CCHFLSG YFELPFAY
Sbjct: 66  NWQLRPRSHLLHQCSGLFFCCHFLSGNYFELPFAY 100

[Close]
BLAST of Lsi02G027000 vs. NCBI nr
Match: KGN45258.1 (hypothetical protein Csa_016845 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-09
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 34  HWQLRSRSHVLHQCSGLVLCCHFLSGMYFELPFAY 69
           +WQLR RSH+LHQCSGL  CCHFLSG YFELPFAY
Sbjct: 66  NWQLRPRSHLLHQCSGLFFCCHFLSGNYFELPFAY 100

The following BLAST results are available for this feature:
BLAST of Lsi02G027000 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi02G027000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6X34.5e-0982.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432400 PE=4 SV=1[more]
BLAST of Lsi02G027000 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45258.19.4e-0982.86hypothetical protein Csa_016845 [Cucumis sativus][more]
BLAST of Lsi02G027000 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G027000.1Lsi02G027000.1mRNA