Lsi02G026960 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G026960
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	VQ motif-containing protein 11
Location	chr02: 33364258 .. 33364686 (+)
RNA-Seq Expression	Lsi02G026960
Synteny	Lsi02G026960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCACCAACGCCGCCGCAGTCGTGCATTCCGCCACCACAACCTTCGTCGAAGCTGACCCATCAACATTCCGATCAATCGTGCAGAAGCTAACCGGAGCGCCCAATCGCCCACCGGCAGCGTTTCGGCTGCAGGAACGGCGGCGGAGTAGCAAGAAGCTGGAGCTGGAGCTGAACAGCGAATACACGGCGATCGGAGGAAGAGGAATCGGAATCGGAATGGTGTCGCCGGTGTCGACGTTGGATTTTATGGAACGTGGGAGTCCGTGTGAAGAAGAAGAGAAAGCAATTGCGGAAAAAGGGTTTTATTTGCATCCGAGTCCGATTAGCACTCCCGGAGGATCCGACCCGCCTCACCTTTTGCCCTTATTTCCTCTTTCTTCTCCTTCCAATTGTAATAACAGAAATCATTCTGTTTCTTCTTAA

mRNA sequence

ATGGCCACCACCAACGCCGCCGCAGTCGTGCATTCCGCCACCACAACCTTCGTCGAAGCTGACCCATCAACATTCCGATCAATCGTGCAGAAGCTAACCGGAGCGCCCAATCGCCCACCGGCAGCGTTTCGGCTGCAGGAACGGCGGCGGAGTAGCAAGAAGCTGGAGCTGGAGCTGAACAGCGAATACACGGCGATCGGAGGAAGAGGAATCGGAATCGGAATGGTGTCGCCGGTGTCGACGTTGGATTTTATGGAACGTGGGAGTCCGTGTGAAGAAGAAGAGAAAGCAATTGCGGAAAAAGGGTTTTATTTGCATCCGAGTCCGATTAGCACTCCCGGAGGATCCGACCCGCCTCACCTTTTGCCCTTATTTCCTCTTTCTTCTCCTTCCAATTGTAATAACAGAAATCATTCTGTTTCTTCTTAA

Coding sequence (CDS)

ATGGCCACCACCAACGCCGCCGCAGTCGTGCATTCCGCCACCACAACCTTCGTCGAAGCTGACCCATCAACATTCCGATCAATCGTGCAGAAGCTAACCGGAGCGCCCAATCGCCCACCGGCAGCGTTTCGGCTGCAGGAACGGCGGCGGAGTAGCAAGAAGCTGGAGCTGGAGCTGAACAGCGAATACACGGCGATCGGAGGAAGAGGAATCGGAATCGGAATGGTGTCGCCGGTGTCGACGTTGGATTTTATGGAACGTGGGAGTCCGTGTGAAGAAGAAGAGAAAGCAATTGCGGAAAAAGGGTTTTATTTGCATCCGAGTCCGATTAGCACTCCCGGAGGATCCGACCCGCCTCACCTTTTGCCCTTATTTCCTCTTTCTTCTCCTTCCAATTGTAATAACAGAAATCATTCTGTTTCTTCTTAA

Protein sequence

MATTNAAAVVHSATTTFVEADPSTFRSIVQKLTGAPNRPPAAFRLQERRRSSKKLELELNSEYTAIGGRGIGIGMVSPVSTLDFMERGSPCEEEEKAIAEKGFYLHPSPISTPGGSDPPHLLPLFPLSSPSNCNNRNHSVSS

Homology

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BLAST of Lsi02G026960 vs. ExPASy Swiss-Prot
Match: Q9M8L3 (VQ motif-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=VQ11 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-19
Identity = 75/162 (46.30%), Postives = 91/162 (56.17%), Query Frame = 0


Query: 15  TTFVEADPSTFRSIVQKLTGAP--------------------NRPPAAFRLQERRRSSKK 74
           T FV+ADPS FR+IVQKLTGAP                         AF+L ERR+SSKK
Sbjct: 15  TMFVQADPSNFRNIVQKLTGAPPDISSSSFSAVSAAHQKLPLTPKKPAFKLHERRQSSKK 74

Query: 75  LELELN-----SEYTAIGGRGIGIGMVSPVSTLD-FMERGS-----------PCEEEEKA 134
           +EL++N     ++  +   RG    +VSPVS LD F  R S           P +EE+KA
Sbjct: 75  MELKVNNITNPNDAFSHFHRGF---LVSPVSHLDPFWARVSPHSAREEHHAQPDKEEQKA 134

Query: 135 IAEKGFYLHPSPISTPGGSDP-PHLLPLFPLSSPSNCNNRNH 139
           IAEKGFY  PSP S   GS+P P LLPLFPL SP+  N+R H
Sbjct: 135 IAEKGFYFLPSPRS---GSEPAPELLPLFPLRSPNGTNHRIH 170

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BLAST of Lsi02G026960 vs. ExPASy Swiss-Prot
Match: Q9LDZ1 (VQ motif-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=VQ19 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-11
Identity = 60/178 (33.71%), Postives = 81/178 (45.51%), Query Frame = 0


Query: 15  TTFVEADPSTFRSIVQKLTGAPN-------RPP----------------------AAFRL 74
           TTFV+AD S+F+ +VQ LTG+ +       RPP                      +  +L
Sbjct: 37  TTFVQADSSSFKQVVQMLTGSSSPRSPDSPRPPTTPSGKGNFVIPPIKTAQPKKHSGNKL 96

Query: 75  QERRRS---SKKLELELNSEYTAIGGRGIG---------------------IGMVSPVST 131
            ERR     +  L+  L      IGG G G                     + + SPV+ 
Sbjct: 97  YERRSHGGFNNNLKNSLMINTLMIGGGGAGSPRFSPRNQEILSPSCLDFPKLALNSPVTP 156

[Close]

BLAST of Lsi02G026960 vs. ExPASy Swiss-Prot
Match: Q9FHZ3 (VQ motif-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=VQ33 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-10
Identity = 60/193 (31.09%), Postives = 82/193 (42.49%), Query Frame = 0


Query: 15  TTFVEADPSTFRSIVQKLTGA----------------------------PNRPPAAFRLQ 74
           TTFV+AD STF+ +VQ LTG+                            P +   +F+L 
Sbjct: 49  TTFVQADTSTFKQVVQMLTGSSTDTTTGKHHEAPSPVNNNNKGSSFSIPPIKKTNSFKLY 108

Query: 75  ERRRSSKK-----------LELELNSEYTAIGGRGI------------------------ 132
           ERR+++             L L+ +      GG                           
Sbjct: 109 ERRQNNNNMFAKNDLMINTLRLQNSQRLMFTGGNSSHHQSPRFSPRNSSSSENILLSPSM 168

[Close]

BLAST of Lsi02G026960 vs. ExPASy Swiss-Prot
Match: Q9FNP0 (VQ motif-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=VQ31 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-10
Identity = 60/155 (38.71%), Postives = 76/155 (49.03%), Query Frame = 0


Query: 15  TTFVEADPSTFRSIVQKLTGAPNRPPAA-----------------FRLQERRRSSK-KLE 74
           TTFV+ D +TFR IVQ+LTG      AA                  +L ERR+  + KLE
Sbjct: 17  TTFVQTDTNTFREIVQRLTGPTENNAAAATPEATVIKTAIQKRPTSKLHERRQCMRPKLE 76

Query: 75  -----LELNSEYTAIGGRGIGIGMV-SPVST-------LDFMERGSP------CEEEEKA 133
                L      T    +     ++ SPV T       L  +E G P       EEEEKA
Sbjct: 77  IVKPPLSFKPTGTTPSSKSGNTNLLTSPVGTPSSLFSNLSLIE-GEPDSCTTNIEEEEKA 136

[Close]

BLAST of Lsi02G026960 vs. ExPASy Swiss-Prot
Match: Q5M750 (VQ motif-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=VQ4 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.3e-10
Identity = 59/193 (30.57%), Postives = 81/193 (41.97%), Query Frame = 0


Query: 15  TTFVEADPSTFRSIVQKLTGAPNRP----------------------------------- 74
           TTFV+AD S+F+ +VQ LTG+  RP                                   
Sbjct: 57  TTFVQADTSSFKQVVQMLTGSAERPKHGSSLKPNPTHHQPDPRSTPSSFSIPPIKAVPNK 116

Query: 75  ------PAAFRLQERRRSSKKLELE-LNSEYTAIGGR-----------------GIGIGM 134
                  + FRL ERR S K L++  LN  +  +                     + +  
Sbjct: 117 KQSSSSASGFRLYERRNSMKNLKINPLNPVFNPVNSAFSPRKPEILSPSILDFPSLVLSP 176

Query: 135 VSPVSTLDFMERGSPCEE------EEKAIAEKGFYLHPSPISTPGGSDP-PHLLPLFPLS 142
           V+P+    F   GS  +       EEKA+ E+GFYLHPSP +TP   DP P LLPLFP++
Sbjct: 177 VTPLIPDPFDRSGSSNQSPNELAAEEKAMKERGFYLHPSPATTP--MDPEPRLLPLFPVT 236

[Close]

BLAST of Lsi02G026960 vs. ExPASy TrEMBL
Match: A0A5D3CGZ5 (VQ motif-containing protein 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001850 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.9e-61
Identity = 125/142 (88.03%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 1   MATTNAAAVVHSATTTFVEADPSTFRSIVQKLTGAPNRPPAAFRLQERRRSSKKLELELN 60
           MATTNA AV+HSATTTFVEADPSTFRSIVQKLTGAPN PPAA+RLQERRRSSKKLELELN
Sbjct: 1   MATTNATAVIHSATTTFVEADPSTFRSIVQKLTGAPNHPPAAYRLQERRRSSKKLELELN 60

Query: 61  SEYTAIGGRGIGIGMVSPVSTLDFMERGSPCEEEEKAIAEKGFYLHPSPISTPGGSDPPH 120
           + YT  G  GIGIGMVSPVSTLDFM  GSPCEEEE+AIAEKG+YLHPSPI+TPGGSDPPH
Sbjct: 61  TGYTVAG--GIGIGMVSPVSTLDFMGCGSPCEEEERAIAEKGYYLHPSPINTPGGSDPPH 120

Query: 121 LLPLFPLSSPSNCNNRNHSVSS 143
           LLPLFPLSSPS+CNNRN+SVSS
Sbjct: 121 LLPLFPLSSPSDCNNRNYSVSS 140

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BLAST of Lsi02G026960 vs. ExPASy TrEMBL
Match: A0A1S3CF34 (VQ motif-containing protein 11 OS=Cucumis melo OX=3656 GN=LOC103500018 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.9e-61
Identity = 125/142 (88.03%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 1   MATTNAAAVVHSATTTFVEADPSTFRSIVQKLTGAPNRPPAAFRLQERRRSSKKLELELN 60
           MATTNA AV+HSATTTFVEADPSTFRSIVQKLTGAPN PPAA+RLQERRRSSKKLELELN
Sbjct: 1   MATTNATAVIHSATTTFVEADPSTFRSIVQKLTGAPNHPPAAYRLQERRRSSKKLELELN 60

Query: 61  SEYTAIGGRGIGIGMVSPVSTLDFMERGSPCEEEEKAIAEKGFYLHPSPISTPGGSDPPH 120
           + YT  G  GIGIGMVSPVSTLDFM  GSPCEEEE+AIAEKG+YLHPSPI+TPGGSDPPH
Sbjct: 61  TGYTVAG--GIGIGMVSPVSTLDFMGCGSPCEEEERAIAEKGYYLHPSPINTPGGSDPPH 120

Query: 121 LLPLFPLSSPSNCNNRNHSVSS 143
           LLPLFPLSSPS+CNNRN+SVSS
Sbjct: 121 LLPLFPLSSPSDCNNRNYSVSS 140

[Close]

BLAST of Lsi02G026960 vs. ExPASy TrEMBL
Match: A0A0A0K6W6 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432350 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.1e-59
Identity = 123/142 (86.62%), Postives = 131/142 (92.25%), Query Frame = 0


Query: 1   MATTNAAAVVHSATTTFVEADPSTFRSIVQKLTGAPNRPPAAFRLQERRRSSKKLELELN 60
           MATTNA AVVHS+TTTFVEADPSTFRSIVQKLTGAP+ PPAA+RLQERRRSSKKLELELN
Sbjct: 1   MATTNATAVVHSSTTTFVEADPSTFRSIVQKLTGAPHHPPAAYRLQERRRSSKKLELELN 60

Query: 61  SEYTAIGGRGIGIGMVSPVSTLDFMERGSPCEEEEKAIAEKGFYLHPSPISTPGGSDPPH 120
           + YT  G  GIG GMVSPVSTLDFM  GSPCEEEE+AIAEKG+YLHPSPI+TPGGSDPPH
Sbjct: 61  TGYTTTG--GIGNGMVSPVSTLDFMGCGSPCEEEERAIAEKGYYLHPSPINTPGGSDPPH 120

Query: 121 LLPLFPLSSPSNCNNRNHSVSS 143
           LLPLFPLSSPSNCNNRN+ VSS
Sbjct: 121 LLPLFPLSSPSNCNNRNYYVSS 140

[Close]

BLAST of Lsi02G026960 vs. ExPASy TrEMBL
Match: A0A6J1H8B6 (VQ motif-containing protein 11-like OS=Cucurbita moschata OX=3662 GN=LOC111460985 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 8.1e-52
Identity = 113/142 (79.58%), Postives = 121/142 (85.21%), Query Frame = 0


Query: 1   MATTNAAAVVHSATTTFVEADPSTFRSIVQKLTGAPNRPPAAFRLQERRRSSKKLELELN 60
           MA T  AA VHS+TTTFVEADPS+FR+IVQKLTGAPN P A+FRLQERRRSSKKLELELN
Sbjct: 1   MAATATAATVHSSTTTFVEADPSSFRAIVQKLTGAPNAPSASFRLQERRRSSKKLELELN 60

Query: 61  SEYTAIGGRGIGIGMVSPVSTLDFMERGSPCEEEEKAIAEKGFYLHPSPISTPGGSDPPH 120
                + G GIGI MVSPVSTLDF+ RG+PCEEEEKAIA KGFYLHPSPIS PGGS PP 
Sbjct: 61  GG-DGLTGIGIGIEMVSPVSTLDFVARGNPCEEEEKAIAGKGFYLHPSPISPPGGSQPPR 120

Query: 121 LLPLFPLSSPSNCNNRNHSVSS 143
           LLPLFPLSSP +CN RNHSVSS
Sbjct: 121 LLPLFPLSSPRDCNFRNHSVSS 141

[Close]

BLAST of Lsi02G026960 vs. ExPASy TrEMBL
Match: A0A6J1KQ55 (VQ motif-containing protein 11-like OS=Cucurbita maxima OX=3661 GN=LOC111497685 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.8e-50
Identity = 108/136 (79.41%), Postives = 118/136 (86.76%), Query Frame = 0


Query: 7   AAVVHSATTTFVEADPSTFRSIVQKLTGAPNRPPAAFRLQERRRSSKKLELELNSEYTAI 66
           AA VHS+TTTFVEADPS+FR+IVQKLTGAP+ P A++RLQERRRSSKKLELELN     +
Sbjct: 11  AATVHSSTTTFVEADPSSFRAIVQKLTGAPDAPSASYRLQERRRSSKKLELELNGG-DGL 70

Query: 67  GGRGIGIGMVSPVSTLDFMERGSPCEEEEKAIAEKGFYLHPSPISTPGGSDPPHLLPLFP 126
            G GIGI MVSPVSTLDF+ RG+PCEEEEKAIA KGFYLHPSPIS PGGS PP LLPLFP
Sbjct: 71  TGIGIGIEMVSPVSTLDFVARGNPCEEEEKAIAGKGFYLHPSPISPPGGSQPPRLLPLFP 130

Query: 127 LSSPSNCNNRNHSVSS 143
           LSSP +CN RNHSVSS
Sbjct: 131 LSSPRDCNFRNHSVSS 145

[Close]

BLAST of Lsi02G026960 vs. NCBI nr
Match: XP_038897860.1 (VQ motif-containing protein 11-like [Benincasa hispida])

HSP 1 Score: 250.4 bits (638), Expect = 9.5e-63
Identity = 129/142 (90.85%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 1   MATTNAAAVVHSATTTFVEADPSTFRSIVQKLTGAPNRPPAAFRLQERRRSSKKLELELN 60
           MATTN  AVVHSATTTFVEADPSTFR+IVQKLTGAPNRPPAAFRLQERRRSSKKLELELN
Sbjct: 1   MATTNPTAVVHSATTTFVEADPSTFRAIVQKLTGAPNRPPAAFRLQERRRSSKKLELELN 60

Query: 61  SEYTAIGGRGIGIGMVSPVSTLDFMERGSPCEEEEKAIAEKGFYLHPSPISTPGGSDPPH 120
           S YTA G    GIGMVSPVSTL+F+ RGSPCEEEE+AIAEKGFYLHPSPISTPGGSDPPH
Sbjct: 61  SGYTAAG----GIGMVSPVSTLEFIGRGSPCEEEERAIAEKGFYLHPSPISTPGGSDPPH 120

Query: 121 LLPLFPLSSPSNCNNRNHSVSS 143
           LLPLFPLSSPSNCNNRNHSVSS
Sbjct: 121 LLPLFPLSSPSNCNNRNHSVSS 138

[Close]

BLAST of Lsi02G026960 vs. NCBI nr
Match: XP_008461422.1 (PREDICTED: VQ motif-containing protein 11 [Cucumis melo] >KAA0058738.1 VQ motif-containing protein 11 [Cucumis melo var. makuwa] >TYK10532.1 VQ motif-containing protein 11 [Cucumis melo var. makuwa])

HSP 1 Score: 245.0 bits (624), Expect = 4.0e-61
Identity = 125/142 (88.03%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 1   MATTNAAAVVHSATTTFVEADPSTFRSIVQKLTGAPNRPPAAFRLQERRRSSKKLELELN 60
           MATTNA AV+HSATTTFVEADPSTFRSIVQKLTGAPN PPAA+RLQERRRSSKKLELELN
Sbjct: 1   MATTNATAVIHSATTTFVEADPSTFRSIVQKLTGAPNHPPAAYRLQERRRSSKKLELELN 60

Query: 61  SEYTAIGGRGIGIGMVSPVSTLDFMERGSPCEEEEKAIAEKGFYLHPSPISTPGGSDPPH 120
           + YT  G  GIGIGMVSPVSTLDFM  GSPCEEEE+AIAEKG+YLHPSPI+TPGGSDPPH
Sbjct: 61  TGYTVAG--GIGIGMVSPVSTLDFMGCGSPCEEEERAIAEKGYYLHPSPINTPGGSDPPH 120

Query: 121 LLPLFPLSSPSNCNNRNHSVSS 143
           LLPLFPLSSPS+CNNRN+SVSS
Sbjct: 121 LLPLFPLSSPSDCNNRNYSVSS 140

[Close]

BLAST of Lsi02G026960 vs. NCBI nr
Match: XP_004154113.2 (VQ motif-containing protein 11 [Cucumis sativus] >KGN45253.1 hypothetical protein Csa_016270 [Cucumis sativus])

HSP 1 Score: 239.2 bits (609), Expect = 2.2e-59
Identity = 123/142 (86.62%), Postives = 131/142 (92.25%), Query Frame = 0


Query: 1   MATTNAAAVVHSATTTFVEADPSTFRSIVQKLTGAPNRPPAAFRLQERRRSSKKLELELN 60
           MATTNA AVVHS+TTTFVEADPSTFRSIVQKLTGAP+ PPAA+RLQERRRSSKKLELELN
Sbjct: 1   MATTNATAVVHSSTTTFVEADPSTFRSIVQKLTGAPHHPPAAYRLQERRRSSKKLELELN 60

Query: 61  SEYTAIGGRGIGIGMVSPVSTLDFMERGSPCEEEEKAIAEKGFYLHPSPISTPGGSDPPH 120
           + YT  G  GIG GMVSPVSTLDFM  GSPCEEEE+AIAEKG+YLHPSPI+TPGGSDPPH
Sbjct: 61  TGYTTTG--GIGNGMVSPVSTLDFMGCGSPCEEEERAIAEKGYYLHPSPINTPGGSDPPH 120

Query: 121 LLPLFPLSSPSNCNNRNHSVSS 143
           LLPLFPLSSPSNCNNRN+ VSS
Sbjct: 121 LLPLFPLSSPSNCNNRNYYVSS 140

[Close]

BLAST of Lsi02G026960 vs. NCBI nr
Match: XP_022960160.1 (VQ motif-containing protein 11-like [Cucurbita moschata])

HSP 1 Score: 213.0 bits (541), Expect = 1.7e-51
Identity = 113/142 (79.58%), Postives = 121/142 (85.21%), Query Frame = 0


Query: 1   MATTNAAAVVHSATTTFVEADPSTFRSIVQKLTGAPNRPPAAFRLQERRRSSKKLELELN 60
           MA T  AA VHS+TTTFVEADPS+FR+IVQKLTGAPN P A+FRLQERRRSSKKLELELN
Sbjct: 1   MAATATAATVHSSTTTFVEADPSSFRAIVQKLTGAPNAPSASFRLQERRRSSKKLELELN 60

Query: 61  SEYTAIGGRGIGIGMVSPVSTLDFMERGSPCEEEEKAIAEKGFYLHPSPISTPGGSDPPH 120
                + G GIGI MVSPVSTLDF+ RG+PCEEEEKAIA KGFYLHPSPIS PGGS PP 
Sbjct: 61  GG-DGLTGIGIGIEMVSPVSTLDFVARGNPCEEEEKAIAGKGFYLHPSPISPPGGSQPPR 120

Query: 121 LLPLFPLSSPSNCNNRNHSVSS 143
           LLPLFPLSSP +CN RNHSVSS
Sbjct: 121 LLPLFPLSSPRDCNFRNHSVSS 141

[Close]

BLAST of Lsi02G026960 vs. NCBI nr
Match: KAG6593385.1 (VQ motif-containing protein 11, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025733.1 VQ motif-containing protein 11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.5 bits (532), Expect = 1.9e-50
Identity = 110/137 (80.29%), Postives = 118/137 (86.13%), Query Frame = 0


Query: 6   AAAVVHSATTTFVEADPSTFRSIVQKLTGAPNRPPAAFRLQERRRSSKKLELELNSEYTA 65
           AA  VHS+TTTFVEADPS+FR+IVQKLTGAPN P A+FRLQERRRSSKKLELELN     
Sbjct: 4   AATTVHSSTTTFVEADPSSFRAIVQKLTGAPNAPSASFRLQERRRSSKKLELELNGG-DG 63

Query: 66  IGGRGIGIGMVSPVSTLDFMERGSPCEEEEKAIAEKGFYLHPSPISTPGGSDPPHLLPLF 125
           + G GIGI MVSPVSTLDF+ RG+PCEEEEKAIA KGFYLHPSPIS PGGS PP LLPLF
Sbjct: 64  LTGIGIGIEMVSPVSTLDFVARGNPCEEEEKAIAGKGFYLHPSPISPPGGSQPPRLLPLF 123

Query: 126 PLSSPSNCNNRNHSVSS 143
           PLSSP +CN RNHSVSS
Sbjct: 124 PLSSPRDCNFRNHSVSS 139

[Close]

BLAST of Lsi02G026960 vs. TAIR 10
Match: AT1G80450.1 (VQ motif-containing protein )

HSP 1 Score: 97.4 bits (241), Expect = 9.6e-21
Identity = 75/162 (46.30%), Postives = 91/162 (56.17%), Query Frame = 0


Query: 15  TTFVEADPSTFRSIVQKLTGAP--------------------NRPPAAFRLQERRRSSKK 74
           T FV+ADPS FR+IVQKLTGAP                         AF+L ERR+SSKK
Sbjct: 15  TMFVQADPSNFRNIVQKLTGAPPDISSSSFSAVSAAHQKLPLTPKKPAFKLHERRQSSKK 74

Query: 75  LELELN-----SEYTAIGGRGIGIGMVSPVSTLD-FMERGS-----------PCEEEEKA 134
           +EL++N     ++  +   RG    +VSPVS LD F  R S           P +EE+KA
Sbjct: 75  MELKVNNITNPNDAFSHFHRGF---LVSPVSHLDPFWARVSPHSAREEHHAQPDKEEQKA 134

Query: 135 IAEKGFYLHPSPISTPGGSDP-PHLLPLFPLSSPSNCNNRNH 139
           IAEKGFY  PSP S   GS+P P LLPLFPL SP+  N+R H
Sbjct: 135 IAEKGFYFLPSPRS---GSEPAPELLPLFPLRSPNGTNHRIH 170

[Close]

BLAST of Lsi02G026960 vs. TAIR 10
Match: AT3G15300.1 (VQ motif-containing protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-12
Identity = 60/178 (33.71%), Postives = 81/178 (45.51%), Query Frame = 0


Query: 15  TTFVEADPSTFRSIVQKLTGAPN-------RPP----------------------AAFRL 74
           TTFV+AD S+F+ +VQ LTG+ +       RPP                      +  +L
Sbjct: 37  TTFVQADSSSFKQVVQMLTGSSSPRSPDSPRPPTTPSGKGNFVIPPIKTAQPKKHSGNKL 96

Query: 75  QERRRS---SKKLELELNSEYTAIGGRGIG---------------------IGMVSPVST 131
            ERR     +  L+  L      IGG G G                     + + SPV+ 
Sbjct: 97  YERRSHGGFNNNLKNSLMINTLMIGGGGAGSPRFSPRNQEILSPSCLDFPKLALNSPVTP 156

[Close]

BLAST of Lsi02G026960 vs. TAIR 10
Match: AT5G53830.1 (VQ motif-containing protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11
Identity = 60/193 (31.09%), Postives = 82/193 (42.49%), Query Frame = 0


Query: 15  TTFVEADPSTFRSIVQKLTGA----------------------------PNRPPAAFRLQ 74
           TTFV+AD STF+ +VQ LTG+                            P +   +F+L 
Sbjct: 49  TTFVQADTSTFKQVVQMLTGSSTDTTTGKHHEAPSPVNNNNKGSSFSIPPIKKTNSFKLY 108

Query: 75  ERRRSSKK-----------LELELNSEYTAIGGRGI------------------------ 132
           ERR+++             L L+ +      GG                           
Sbjct: 109 ERRQNNNNMFAKNDLMINTLRLQNSQRLMFTGGNSSHHQSPRFSPRNSSSSENILLSPSM 168

[Close]

BLAST of Lsi02G026960 vs. TAIR 10
Match: AT5G08480.2 (VQ motif-containing protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-11
Identity = 60/155 (38.71%), Postives = 76/155 (49.03%), Query Frame = 0


Query: 15  TTFVEADPSTFRSIVQKLTGAPNRPPAA-----------------FRLQERRRSSK-KLE 74
           TTFV+ D +TFR IVQ+LTG      AA                  +L ERR+  + KLE
Sbjct: 17  TTFVQTDTNTFREIVQRLTGPTENNAAAATPEATVIKTAIQKRPTSKLHERRQCMRPKLE 76

Query: 75  -----LELNSEYTAIGGRGIGIGMV-SPVST-------LDFMERGSP------CEEEEKA 133
                L      T    +     ++ SPV T       L  +E G P       EEEEKA
Sbjct: 77  IVKPPLSFKPTGTTPSSKSGNTNLLTSPVGTPSSLFSNLSLIE-GEPDSCTTNIEEEEKA 136

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BLAST of Lsi02G026960 vs. TAIR 10
Match: AT1G28280.2 (VQ motif-containing protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.4e-11
Identity = 57/182 (31.32%), Postives = 77/182 (42.31%), Query Frame = 0


Query: 15  TTFVEADPSTFRSIVQKLTGAPNRP----------------------------------- 74
           TTFV+AD S+F+ +VQ LTG+  RP                                   
Sbjct: 57  TTFVQADTSSFKQVVQMLTGSAERPKHGSSLKPNPTHHQPDPRSTPSSFSIPPIKAVPNK 116

Query: 75  ------PAAFRLQERRRSSKKLELE-LNSEYTAIGGR-----------------GIGIGM 131
                  + FRL ERR S K L++  LN  +  +                     + +  
Sbjct: 117 KQSSSSASGFRLYERRNSMKNLKINPLNPVFNPVNSAFSPRKPEILSPSILDFPSLVLSP 176

The following BLAST results are available for this feature:

BLAST of Lsi02G026960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M8L3	1.3e-19	46.30	VQ motif-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=VQ11 PE=1 SV=1	[more]
Q9LDZ1	1.8e-11	33.71	VQ motif-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=VQ19 PE=1 SV=1	[more]
Q9FHZ3	1.5e-10	31.09	VQ motif-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=VQ33 PE=1 SV=1	[more]
Q9FNP0	2.5e-10	38.71	VQ motif-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=VQ31 PE=1 SV=1	[more]
Q5M750	4.3e-10	30.57	VQ motif-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=VQ4 PE=1 SV=1	[more]

BLAST of Lsi02G026960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CGZ5	1.9e-61	88.03	VQ motif-containing protein 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CF34	1.9e-61	88.03	VQ motif-containing protein 11 OS=Cucumis melo OX=3656 GN=LOC103500018 PE=4 SV=1	[more]
A0A0A0K6W6	1.1e-59	86.62	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432350 PE=4 SV=...	[more]
A0A6J1H8B6	8.1e-52	79.58	VQ motif-containing protein 11-like OS=Cucurbita moschata OX=3662 GN=LOC11146098...	[more]
A0A6J1KQ55	5.8e-50	79.41	VQ motif-containing protein 11-like OS=Cucurbita maxima OX=3661 GN=LOC111497685 ...	[more]

BLAST of Lsi02G026960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897860.1	9.5e-63	90.85	VQ motif-containing protein 11-like [Benincasa hispida]	[more]
XP_008461422.1	4.0e-61	88.03	PREDICTED: VQ motif-containing protein 11 [Cucumis melo] >KAA0058738.1 VQ motif-...	[more]
XP_004154113.2	2.2e-59	86.62	VQ motif-containing protein 11 [Cucumis sativus] >KGN45253.1 hypothetical protei...	[more]
XP_022960160.1	1.7e-51	79.58	VQ motif-containing protein 11-like [Cucurbita moschata]	[more]
KAG6593385.1	1.9e-50	80.29	VQ motif-containing protein 11, partial [Cucurbita argyrosperma subsp. sororia] ...	[more]

BLAST of Lsi02G026960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80450.1	9.6e-21	46.30	VQ motif-containing protein	[more]
AT3G15300.1	1.3e-12	33.71	VQ motif-containing protein	[more]
AT5G53830.1	1.1e-11	31.09	VQ motif-containing protein	[more]
AT5G08480.2	1.8e-11	38.71	VQ motif-containing protein	[more]
AT1G28280.2	2.4e-11	31.32	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 14..36 e-value: 6.7E-11 score: 41.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..142
None	No IPR available	PANTHER	PTHR33402:SF19	VQ MOTIF-CONTAINING PROTEIN 11	coord: 7..134
IPR039611	VQ motif-containing protein 4/11/13/19/31/33	PANTHER	PTHR33402	VQ MOTIF-CONTAINING PROTEIN 11-LIKE	coord: 7..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G026960.1	Lsi02G026960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus