Lsi02G026930 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G026930
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	calcineurin subunit B
Location	chr02: 33332127 .. 33335291 (-)
RNA-Seq Expression	Lsi02G026930
Synteny	Lsi02G026930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGTTTGTTCCTCACCGTCGGCCCTACTAACATCATCGCGACTCAGAGTATTGCCTCGACAGACCATTCCATTTATAAAATTCAACTAATCTCTGTAAATTTTCATGCTTTCCTTAACTCTGTTTTTCTTTAGGAAAAAAAATATAAACTTTTACCAGCCCACATAAATTTATCACATCTTCACCATCAAATTTCTACTCATATCGAAAATAGCGTCAAGATTAGCGATGCCCTTGATGCTCAATTGGACAGAATCAAAGGGGAAAATCTTCGTCGCCTTCGATCACAACAAAAAAAAGAGGCAATAAAAGCTTATCTAGGCTTTTTTAGAGTCTCGATGATGTCCAGGTGAAAGCTTCAGCGGGGTTCATTCTATTTCTATATCTGCTGTGGGTAAGTAAAAGAATACCCAATTTGGTTACTGCCCATTATCAGATCAGCTGTGATTTTCAGGTCTGTTCTTATTGCCTTTTGCCCCACTTTTAGAGAATTGTTACAGCTTTCCAACTCTATGAAGCTTAATTGTTTGAATTTTGAGGGTGCTACTTGTTCTATTCTGATTCTGTCTGTGGGTTGAAGATTGATTTGATTGATGGTTTTTATGGGGTTTTTTCTCAGATTGGTTTCTTAGTACTTTTTAGAAATTGGACATTTGGATTGAGAATTCATGGGGAATGCTTCATCGATGCTCACTCAATATGATATTGAAGAAGTTCAAGAGCACTGCAATAAACTTTGTGGGTTATTTTATCCTTGTCTTCAATGATTTCTTTTCTTTGTTTTTGTGAGTGGTTTAGTTGGCTTACTTTCTCTTACTATTTGCTTGTGTGTAAGTTAGTCTCCCAACAGGAAATAGTGTCATTGTATCAGAGATTCTGCCAACTTGATAGAAATGCCAAGGGGTTTATTTCAGCTGATGAGTTCCTCTCAGTTCCTGAATTTGCAATGAATCCACTTTCTCAGGTTTTGCATTGGAATTTTGTTCTTGTTCCATCATTCAACCTTGAAATTGAATCTGCTTTATTGTGTGTTTGTGTGTTGGTTATATCAGTTATGCCACTTATGGTAAGTGTTATCTCTGTTCTCCTGTTGTTTTCTTCAGCGTTTGCTCAAGATGGTTGATGGCTTGAACTTTAAGGATTTTGTGGCTTTCTTGACAGCATTCAGTACTAAAGCTAGTGTGCACCATAAGATTGAATGTAAGTGCATGGCTTGCTGCTGCTAGTTCATTTTTTGCTGGTTTGGTTTAGGGTTGAGGGTCCTATTTGAAAATCAATGCTTATTTAAAACATCAGAGATCCCTGCCAATCATTTTTATGGCAGTCAGCAGTAGTGAAGTTTGATATTTAAGCCTTAAGGTCAATAATGTTAGACAGGGAAAGGGAAAATTTGTCACACGTTTCTACTCAGAAGTCATTGAACTTTTTAGTCGTGCCTCCATCGAGTATATTGGAGCAACTTCTGTCTCATGAAGCTGATTTATAAGTTATAATTCATGATATCTAAGATGGTGTAGCATAAATTGTCATCAAGGAGTGTTTGAGGTGTTGAATTGAGTTATGAATTCTAAAGTTTATGTTGGAGTTAGGAAGTCTGTGTTTCGAGTACAGAGTTGTGAAGATGACGTTCATTGATAAATGTGCAAAAGAGAGAAAGAAGGGAAGATGGAGTTCCTCAATGAATATGCAAACTTCAATAGTGAATGCTATTAAATTTGGTGGAATTGAATTATTTAAAACTGACTTATGAAGTCAGTGGGCTAAACACCCCTAAATAACCAAGATATCATGGATTATAGGTTTGGTGACTAAATGGAGAAACTTTTTCTCATGAACTCACAGTAACCCATTATATTGACTTCAATTATCATGGCTTTGAAATGTGCTCTATCAAGGAGTTGTCACTGTAGAGAAGAGACAGTTATTTCGTATTAATAGTTGTCAGTGTCTCTTTATTTCAGTTATTTTCAAGGTACATGATGCCGACTGCAATGGGAAGGTGTCTTTCAACGACATAATTGAAGTGCTTCGGGATTTGTCGGGTCCATTCATCTCCAATGAGCAGAGAGAGGCATGGCCTCTTCCTTCCCTTAGTTTTATATTTTGTATCTGTATTGCCTTTTCAACTTACTGTTAGCTGAGAATGCAATGTGATTCGTTTAGTATAATAAACATAGCAAATAAAGACTCTGAGACATTAATCCATACAGTTCTTTGGTGCATCAAGTAATCTGTTAGAAATTAAGTTGATTTCTTGATGATGATATACCTGCTTGTGGACAGGCATCGAGAGCGGTTACGCTGCTATTCCTGTGAAATGGAAGAACTGCTTCTTTTGCTCTGTGCTTATATTATTTCTTTTCACCTTCATAAACGAACTACCCTGTTAGATCGGTCAGGAGTATAATAGTTTCTCTTTTCCCTTTGCAGCAAGTTTTGTGTCAATTATTACACGAAGCAGGCTATACAAGAAACTCTCAGTTGACACTCGATGACTTCATAAAGGTAGTTTAAGAAGCCAGTGTAACTTTTCGTGAGAGTAGTACTCTGGAAAAAGTTGATCTTTCAAGAAACAACTGGGCAACTTGATAAGCTCTTTTGCATAGTTCTTGATTTATCTAGTTTAACGTTCACGATTTTTTGAAATTCTTTCTCAGGTTCTTGGTAATTCAGGCATAAAAATGGATGTAGAAGTTCCAGTTGATTAGTTGCTGATCTGTTAGGCATAAGCCTTCCAATTTACTTTCAGAAAAAAAGTTAAACACAAAAAGTTTCAACTGCAGACACGGTGAAGTTTGTGATGTTCCATTCAGAACTTGTATCAGCATGCACACATCTGCTTCAGTCCATCTCTGTTACAGAGAGTTGTAATGGAAGACAAGATTTTATACTTTAATTTTCACAGACTGTCCTTTTCCTTCTTCATAATTTGTAAAGACAGTGTCAATAATGTCAATTAATGATTTCCTTTTGTAACTGAGATCAAATCAATGTCGACTCACAAATGTCAACGCAGACAAAATAACAAACTACATGATTTCATTGGAATATCTAACCACGATAATTTATGAGTTTATACAGTTACAATCTGCGTAGAGCAGAGGGGAAATCAAACAAAAAAATCCTTACTCTGTTCTCAGCTTTCTCAAATTTCACCTCTATAAC

mRNA sequence

GTTGTTTGTTCCTCACCGTCGGCCCTACTAACATCATCGCGACTCAGAGTATTGCCTCGACAGACCATTCCATTTATAAAATTCAACTAATCTCTGTAAATTTTCATGCTTTCCTTAACTCTGTTTTTCTTTAGGAAAAAAAATATAAACTTTTACCAGCCCACATAAATTTATCACATCTTCACCATCAAATTTCTACTCATATCGAAAATAGCGTCAAGATTAGCGATGCCCTTGATGCTCAATTGGACAGAATCAAAGGGGAAAATCTTCGTCGCCTTCGATCACAACAAAAAAAAGAGGCAATAAAAGCTTATCTAGGCTTTTTTAGAGTCTCGATGATGTCCAGGTGAAAGCTTCAGCGGGGTTCATTCTATTTCTATATCTGCTGTGGGTAAGTAAAAGAATACCCAATTTGGTTACTGCCCATTATCAGATCAGCTGTGATTTTCAGATTGGTTTCTTAGTACTTTTTAGAAATTGGACATTTGGATTGAGAATTCATGGGGAATGCTTCATCGATGCTCACTCAATATGATATTGAAGAAGTTCAAGAGCACTGCAATAAACTTTTCTCCCAACAGGAAATAGTGTCATTGTATCAGAGATTCTGCCAACTTGATAGAAATGCCAAGGGGTTTATTTCAGCTGATGAGTTCCTCTCAGTTCCTGAATTTGCAATGAATCCACTTTCTCAGCGTTTGCTCAAGATGGTTGATGGCTTGAACTTTAAGGATTTTGTGGCTTTCTTGACAGCATTCAGTACTAAAGCTAGTGTGCACCATAAGATTGAATGCATCGAGAGCGGTTACGCTGCTATTCCTGTGAAATGGAAGAACTGCTTCTTTTGCTCTGTGCTTATATTATTTCTTTTCACCTTCATAAACGAACTACCCTGTTAGATCGGTCAGGAGTATAATAGTTTCTCTTTTCCCTTTGCAGCAAGTTTTGTGTCAATTATTACACGAAGCAGGCTATACAAGAAACTCTCAGTTGACACTCGATGACTTCATAAAGGTTCTTGGTAATTCAGGCATAAAAATGGATGTAGAAGTTCCAGTTGATTAGTTGCTGATCTGTTAGGCATAAGCCTTCCAATTTACTTTCAGAAAAAAAGTTAAACACAAAAAGTTTCAACTGCAGACACGGTGAAGTTTGTGATGTTCCATTCAGAACTTGTATCAGCATGCACACATCTGCTTCAGTCCATCTCTGTTACAGAGAGTTGTAATGGAAGACAAGATTTTATACTTTAATTTTCACAGACTGTCCTTTTCCTTCTTCATAATTTGTAAAGACAGTGTCAATAATGTCAATTAATGATTTCCTTTTGTAACTGAGATCAAATCAATGTCGACTCACAAATGTCAACGCAGACAAAATAACAAACTACATGATTTCATTGGAATATCTAACCACGATAATTTATGAGTTTATACAGTTACAATCTGCGTAGAGCAGAGGGGAAATCAAACAAAAAAATCCTTACTCTGTTCTCAGCTTTCTCAAATTTCACCTCTATAAC

Coding sequence (CDS)

ATGGGGAATGCTTCATCGATGCTCACTCAATATGATATTGAAGAAGTTCAAGAGCACTGCAATAAACTTTTCTCCCAACAGGAAATAGTGTCATTGTATCAGAGATTCTGCCAACTTGATAGAAATGCCAAGGGGTTTATTTCAGCTGATGAGTTCCTCTCAGTTCCTGAATTTGCAATGAATCCACTTTCTCAGCGTTTGCTCAAGATGGTTGATGGCTTGAACTTTAAGGATTTTGTGGCTTTCTTGACAGCATTCAGTACTAAAGCTAGTGTGCACCATAAGATTGAATGCATCGAGAGCGGTTACGCTGCTATTCCTGTGAAATGGAAGAACTGCTTCTTTTGCTCTGTGCTTATATTATTTCTTTTCACCTTCATAAACGAACTACCCTGTTAG

Protein sequence

MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMVDGLNFKDFVAFLTAFSTKASVHHKIECIESGYAAIPVKWKNCFFCSVLILFLFTFINELPC

Homology

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BLAST of Lsi02G026930 vs. ExPASy Swiss-Prot
Match: P42322 (Calcineurin subunit B OS=Naegleria gruberi OX=5762 GN=CNB1 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.2e-15
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60
           MG  +S L   ++EE+Q+  N  F+Q+EI  LY+RF +LD++  G IS DEFL +PE A+
Sbjct: 1   MGTNTSSLRPEEVEEMQKGTN--FTQKEIKKLYKRFKKLDKDGNGTISKDEFLMIPELAV 60

Query: 61  NPLSQRLLKMVD-----GLNFKDFVAFLTAFSTKASVHHKIE 98
           NPL +R++ + D      +NFK+F+A L+ F+ +     K+E
Sbjct: 61  NPLVKRVISIFDENGDGSVNFKEFIAALSVFNAQGDKQRKLE 100

[Close]

BLAST of Lsi02G026930 vs. ExPASy Swiss-Prot
Match: Q55G87 (Calcineurin subunit B type 1 OS=Dictyostelium discoideum OX=44689 GN=cnbA PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.3e-12
Identity = 36/102 (35.29%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60
           MGN  S+L +  +E++++  N  FS+ E+  LY+RF  LD++  G ++ DEFLS+P+ A+
Sbjct: 1   MGNQHSLLNKEQLEQMKD--NSSFSEAELKKLYRRFQMLDKDGSGTLTTDEFLSIPDLAL 60

Query: 61  NPLSQRLLKMVD-----GLNFKDFVAFLTAFSTKASVHHKIE 98
           NPL +R++++ D      + F +FV  L   S K +   K++
Sbjct: 61  NPLLERVIQIFDQNKDNEIEFFEFVGTLATLSHKGTKEDKLK 100

[Close]

BLAST of Lsi02G026930 vs. ExPASy Swiss-Prot
Match: P0CM55 (Calcineurin subunit B OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=CNB1 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.5e-09
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 21 NKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMVD-----GLN 80
          N  FS  E++ L +RF +LD++  G I  DEFL +P+ A NPL+ R++ + D      ++
Sbjct: 15 NSNFSGPELMRLKKRFMKLDKDGSGSIDKDEFLQIPQIANNPLAHRMIAIFDEDGSGTVD 74

Query: 81 FKDFVAFLTAFSTKASVHHKI 97
          F++FV  L+AFS+K     K+
Sbjct: 75 FQEFVGGLSAFSSKGGRDEKL 95

[Close]

BLAST of Lsi02G026930 vs. ExPASy Swiss-Prot
Match: P0CM54 (Calcineurin subunit B OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=CNB1 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.5e-09
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 21 NKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMVD-----GLN 80
          N  FS  E++ L +RF +LD++  G I  DEFL +P+ A NPL+ R++ + D      ++
Sbjct: 15 NSNFSGPELMRLKKRFMKLDKDGSGSIDKDEFLQIPQIANNPLAHRMIAIFDEDGSGTVD 74

Query: 81 FKDFVAFLTAFSTKASVHHKI 97
          F++FV  L+AFS+K     K+
Sbjct: 75 FQEFVGGLSAFSSKGGRDEKL 95

[Close]

BLAST of Lsi02G026930 vs. ExPASy Swiss-Prot
Match: P87072 (Calcineurin subunit B OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=cnb-1 PE=2 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 9.9e-09
Identity = 33/101 (32.67%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 1  MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60
          MGN +S +    ++ + +  N  F ++E+  L +RF +LD++  G I  +EFLS+P+ + 
Sbjct: 1  MGNTTSSV----LDNIVQGSN--FDREEVDRLRKRFMKLDKDNSGTIEREEFLSLPQIST 60

Query: 61 NPLSQRLLKMVD-----GLNFKDFVAFLTAFSTKASVHHKI 97
          NPL+ R++ + D      ++F++FV+ L+AFS+K +   K+
Sbjct: 61 NPLATRMIAIFDEDGGGDVDFQEFVSGLSAFSSKGNKEQKL 95

[Close]

BLAST of Lsi02G026930 vs. ExPASy TrEMBL
Match: A0A0A0KBS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432270 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.2e-46
Identity = 98/105 (93.33%), Postives = 99/105 (94.29%), Query Frame = 0


Query: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60
           MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM
Sbjct: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60

Query: 61  NPLSQRLLKMVDGLNFKDFVAFLTAFSTKASVHHKIECIESGYAA 106
           NPLSQRLLKMVDGLNFKDFVAFL+AFS KASVHHKIE I   Y A
Sbjct: 61  NPLSQRLLKMVDGLNFKDFVAFLSAFSAKASVHHKIEFIFKVYDA 105

[Close]

BLAST of Lsi02G026930 vs. ExPASy TrEMBL
Match: A0A5A7UX28 (Calcineurin subunit B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G002060 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 4.7e-46
Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = 0


Query: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60
           MG+ASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM
Sbjct: 1   MGSASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60

Query: 61  NPLSQRLLKMVDGLNFKDFVAFLTAFSTKASVHHKIECIESGYAA 106
           NPLSQRLLKMVDGLNFKDFVAFL+AFS KASVHHKIE I   Y A
Sbjct: 61  NPLSQRLLKMVDGLNFKDFVAFLSAFSAKASVHHKIEFIFKVYDA 105

[Close]

BLAST of Lsi02G026930 vs. ExPASy TrEMBL
Match: A0A1S3CEG8 (calcineurin subunit B OS=Cucumis melo OX=3656 GN=LOC103499819 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 4.7e-46
Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = 0


Query: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60
           MG+ASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM
Sbjct: 1   MGSASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60

Query: 61  NPLSQRLLKMVDGLNFKDFVAFLTAFSTKASVHHKIECIESGYAA 106
           NPLSQRLLKMVDGLNFKDFVAFL+AFS KASVHHKIE I   Y A
Sbjct: 61  NPLSQRLLKMVDGLNFKDFVAFLSAFSAKASVHHKIEFIFKVYDA 105

[Close]

BLAST of Lsi02G026930 vs. ExPASy TrEMBL
Match: A0A6J1D542 (calcineurin subunit B-like OS=Momordica charantia OX=3673 GN=LOC111017088 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.4e-45
Identity = 96/105 (91.43%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60
           MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDR+AKGFISADEFLSVPEFAM
Sbjct: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRSAKGFISADEFLSVPEFAM 60

Query: 61  NPLSQRLLKMVDGLNFKDFVAFLTAFSTKASVHHKIECIESGYAA 106
           NPLSQRLLKMVDGLNFKDFVAFL+AFS KAS HHKIE I   Y A
Sbjct: 61  NPLSQRLLKMVDGLNFKDFVAFLSAFSAKASTHHKIEFIFKVYDA 105

[Close]

BLAST of Lsi02G026930 vs. ExPASy TrEMBL
Match: A0A6J1KZ13 (calcineurin subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111497658 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.1e-45
Identity = 95/105 (90.48%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60
           MGNASSMLTQYDIEEVQEHC+KLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM
Sbjct: 1   MGNASSMLTQYDIEEVQEHCDKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60

Query: 61  NPLSQRLLKMVDGLNFKDFVAFLTAFSTKASVHHKIECIESGYAA 106
           NPLSQRLLKMVDGLNFKDFVAFL+ FS KAS+HHKIE I   Y A
Sbjct: 61  NPLSQRLLKMVDGLNFKDFVAFLSVFSAKASMHHKIEFIFKVYDA 105

[Close]

BLAST of Lsi02G026930 vs. NCBI nr
Match: XP_004135865.1 (calcineurin subunit B [Cucumis sativus] >KGN45246.1 hypothetical protein Csa_016500 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 2.6e-46
Identity = 98/105 (93.33%), Postives = 99/105 (94.29%), Query Frame = 0


Query: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60
           MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM
Sbjct: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60

Query: 61  NPLSQRLLKMVDGLNFKDFVAFLTAFSTKASVHHKIECIESGYAA 106
           NPLSQRLLKMVDGLNFKDFVAFL+AFS KASVHHKIE I   Y A
Sbjct: 61  NPLSQRLLKMVDGLNFKDFVAFLSAFSAKASVHHKIEFIFKVYDA 105

[Close]

BLAST of Lsi02G026930 vs. NCBI nr
Match: XP_008461145.1 (PREDICTED: calcineurin subunit B [Cucumis melo] >KAA0058736.1 calcineurin subunit B [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 9.8e-46
Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = 0


Query: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60
           MG+ASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM
Sbjct: 1   MGSASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60

Query: 61  NPLSQRLLKMVDGLNFKDFVAFLTAFSTKASVHHKIECIESGYAA 106
           NPLSQRLLKMVDGLNFKDFVAFL+AFS KASVHHKIE I   Y A
Sbjct: 61  NPLSQRLLKMVDGLNFKDFVAFLSAFSAKASVHHKIEFIFKVYDA 105

[Close]

BLAST of Lsi02G026930 vs. NCBI nr
Match: XP_038898820.1 (calcineurin subunit B-like isoform X1 [Benincasa hispida] >XP_038898821.1 calcineurin subunit B-like isoform X1 [Benincasa hispida])

HSP 1 Score: 192.6 bits (488), Expect = 2.2e-45
Identity = 97/105 (92.38%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60
           MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM
Sbjct: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60

Query: 61  NPLSQRLLKMVDGLNFKDFVAFLTAFSTKASVHHKIECIESGYAA 106
           NPLSQRLLKMVDGLNFKDFVAFL+AFS KASV HKIE I   Y A
Sbjct: 61  NPLSQRLLKMVDGLNFKDFVAFLSAFSAKASVQHKIEFIFKVYDA 105

[Close]

BLAST of Lsi02G026930 vs. NCBI nr
Match: XP_022148449.1 (calcineurin subunit B-like [Momordica charantia] >XP_022148457.1 calcineurin subunit B-like [Momordica charantia])

HSP 1 Score: 192.2 bits (487), Expect = 2.8e-45
Identity = 96/105 (91.43%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60
           MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDR+AKGFISADEFLSVPEFAM
Sbjct: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRSAKGFISADEFLSVPEFAM 60

Query: 61  NPLSQRLLKMVDGLNFKDFVAFLTAFSTKASVHHKIECIESGYAA 106
           NPLSQRLLKMVDGLNFKDFVAFL+AFS KAS HHKIE I   Y A
Sbjct: 61  NPLSQRLLKMVDGLNFKDFVAFLSAFSAKASTHHKIEFIFKVYDA 105

[Close]

BLAST of Lsi02G026930 vs. NCBI nr
Match: XP_023004288.1 (calcineurin subunit B-like [Cucurbita maxima])

HSP 1 Score: 191.0 bits (484), Expect = 6.3e-45
Identity = 95/105 (90.48%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60
           MGNASSMLTQYDIEEVQEHC+KLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM
Sbjct: 1   MGNASSMLTQYDIEEVQEHCDKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60

Query: 61  NPLSQRLLKMVDGLNFKDFVAFLTAFSTKASVHHKIECIESGYAA 106
           NPLSQRLLKMVDGLNFKDFVAFL+ FS KAS+HHKIE I   Y A
Sbjct: 61  NPLSQRLLKMVDGLNFKDFVAFLSVFSAKASMHHKIEFIFKVYDA 105

[Close]

BLAST of Lsi02G026930 vs. TAIR 10
Match: AT3G18430.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-44
Identity = 86/103 (83.50%), Postives = 92/103 (89.32%), Query Frame = 0


Query: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60
           MGN SSMLTQYDIEEVQ HC+ LF QQEI+SLYQRFCQLDRNAKGFISADEFLSVPEFAM
Sbjct: 1   MGNTSSMLTQYDIEEVQSHCHDLFEQQEILSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60

Query: 61  NPLSQRLLKMVDGLNFKDFVAFLTAFSTKASVHHKIECIESGY 104
           NPLSQRLLKMVDGLNFKDFVAFL+AFS KAS+  K++ I   Y
Sbjct: 61  NPLSQRLLKMVDGLNFKDFVAFLSAFSAKASLRQKVQLIFKVY 103

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BLAST of Lsi02G026930 vs. TAIR 10
Match: AT3G18430.2 (Calcium-binding EF-hand family protein )

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-44
Identity = 86/103 (83.50%), Postives = 92/103 (89.32%), Query Frame = 0


Query: 1   MGNASSMLTQYDIEEVQEHCNKLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60
           MGN SSMLTQYDIEEVQ HC+ LF QQEI+SLYQRFCQLDRNAKGFISADEFLSVPEFAM
Sbjct: 1   MGNTSSMLTQYDIEEVQSHCHDLFEQQEILSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60

Query: 61  NPLSQRLLKMVDGLNFKDFVAFLTAFSTKASVHHKIECIESGY 104
           NPLSQRLLKMVDGLNFKDFVAFL+AFS KAS+  K++ I   Y
Sbjct: 61  NPLSQRLLKMVDGLNFKDFVAFLSAFSAKASLRQKVQLIFKVY 103

The following BLAST results are available for this feature:

BLAST of Lsi02G026930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42322	4.2e-15	41.18	Calcineurin subunit B OS=Naegleria gruberi OX=5762 GN=CNB1 PE=3 SV=1	[more]
Q55G87	3.3e-12	35.29	Calcineurin subunit B type 1 OS=Dictyostelium discoideum OX=44689 GN=cnbA PE=1 S...	[more]
P0CM55	4.5e-09	38.27	Calcineurin subunit B OS=Cryptococcus neoformans var. neoformans serotype D (str...	[more]
P0CM54	4.5e-09	38.27	Calcineurin subunit B OS=Cryptococcus neoformans var. neoformans serotype D (str...	[more]
P87072	9.9e-09	32.67	Calcineurin subunit B OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS...	[more]

BLAST of Lsi02G026930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBS0	1.2e-46	93.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432270 PE=4 SV=1	[more]
A0A5A7UX28	4.7e-46	92.38	Calcineurin subunit B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33...	[more]
A0A1S3CEG8	4.7e-46	92.38	calcineurin subunit B OS=Cucumis melo OX=3656 GN=LOC103499819 PE=4 SV=1	[more]
A0A6J1D542	1.4e-45	91.43	calcineurin subunit B-like OS=Momordica charantia OX=3673 GN=LOC111017088 PE=4 S...	[more]
A0A6J1KZ13	3.1e-45	90.48	calcineurin subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111497658 PE=4 SV=1	[more]

BLAST of Lsi02G026930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135865.1	2.6e-46	93.33	calcineurin subunit B [Cucumis sativus] >KGN45246.1 hypothetical protein Csa_016...	[more]
XP_008461145.1	9.8e-46	92.38	PREDICTED: calcineurin subunit B [Cucumis melo] >KAA0058736.1 calcineurin subuni...	[more]
XP_038898820.1	2.2e-45	92.38	calcineurin subunit B-like isoform X1 [Benincasa hispida] >XP_038898821.1 calcin...	[more]
XP_022148449.1	2.8e-45	91.43	calcineurin subunit B-like [Momordica charantia] >XP_022148457.1 calcineurin sub...	[more]
XP_023004288.1	6.3e-45	90.48	calcineurin subunit B-like [Cucurbita maxima]	[more]

BLAST of Lsi02G026930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18430.1	2.0e-44	83.50	Calcium-binding EF-hand family protein	[more]
AT3G18430.2	2.0e-44	83.50	Calcium-binding EF-hand family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.238.10		coord: 1..114 e-value: 7.1E-19 score: 69.9
None	No IPR available	PANTHER	PTHR46971:SF1	CALCINEURIN B SUBUNIT (PROTEIN PHOSPHATASE 2B REGULATORY SUBUNIT)-LIKE PROTEIN	coord: 1..99
None	No IPR available	PANTHER	PTHR46971	CALCINEURIN B SUBUNIT (PROTEIN PHOSPHATASE 2B REGULATORY SUBUNIT)-LIKE PROTEIN	coord: 1..99
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 27..62 score: 9.687501
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G026930.1	Lsi02G026930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding