Lsi02G026770 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAAAAAGAAAAAAAAAATTGTAGAGAGAGAAAGAAGAGAGAGAAAGTAATGGAATTTAGAGAGTAGATGAGGAAGTAATGAACGTGACCATCCACTTCCAAACCCATGGCCCCATCTATATAAACCTTCTGCTTTCCCCATTCCCCACTTTTTTCCTTCTTCCTTCTTCCGCCACCAAACCCATTTCTCTCTCTACTTTCTCTCTCATCGCCGCCGAGTTTACCATGTCTGACGAGGAATGGGTCGACGTTGCCCTCTCTGATGACTCTCTCGTCGTCGACTTACTTCTTCGTCTCAACCGTCCTCCCTCTCCGCCGCTCCCTCTCGACTGGTCCGTTCGTCAGCCTCGCTCTAAGCCGATTCTTCCTCGCCATGCCTCCGATTCTGCACTCAAAAACTCCGATTCCGCCGCCAGAGCCAGTCCGACCACTCCCCTCACTTGGAGCAGCGGCGGCGGTGGTGGAGCTACCTCCGTCAGCGGCGGATTTGTCGACGCATCCGACGCCGCAAGATCTAAGGTTCCCATTCGTTTCGGTTTCGGTTTTTCTTTTTCGGTTCTGTTTCGTTTTGGTGTTCTTCTGAAAACTCAGTGAGTGCGTGCGTGCGAATAGACTAAAATACCCCTCCGTCGGGGACTTGTCAGAGTTTTGAACCCTTTTTCTTCAAAACTTCTAATTATTCCCCTTTTTGAAATTACGGATCTACCCTTCTTTTGCCCCCACCGCCGGCAACTTTTCCGGCCATTTTTTCATAATTACCCGAATACCCATTTCAGCCAATGATGAAATGAGACGACCCCTTTACCCTTTTCTCCAAATGGGTGACCTCTGTTGGACGCAAATGGGTCAAAAAGAGTGGGTAGTAATGGGATTCTAAAAAGGGCATTTTGGTAATTTAGACAATACAAGCACAAGCCAGTGTAAAGAGTCAAACCCCCTTCCCTCTCTCCATTAGCATTGGCCCAATAAACTCCACCTGGAAAATGGATTATGGATTATCCCCCAAAAGTAATAGTCAAACCCTAGACTCTACCACAAGGGTCATTTTCGTCATTTCACCTCCAAAAGCTTAAAGGGCCCCTCTTTATCGGTGGCGTGTTTCCGTGGCAATGAAGTCTGTGTGCAAATGGTGTTGGTGGTTGTGCCCTTTTTATGTTGGTTTATTGAAAATTATACCCTAAACTTAAAAATAATCCTCTGTGGTCGTTTCTACTTTGGCTTTGTAGTTTTTGCTTCATCTCTACCCTTCATTTCCCTTTAATCTGACAAAAGTCTCTGTTTTTTTTAATGGTTTAGAGATATTAGATTCGTTGGTATGGTCAAAAGATGTTTTTAAATGGGGGGTTGTTTTTTAGTTCTCTTCCATGACAGCCTGTGATCCTAAACTTTTCCCCCTTTTTCTTATAAAACATAAATTTTTGTGTCTGGAAAATGGTACAACAATGTTTTTTTTGAACCCCATTTTGGTGAACTACAAACTAAACTAACCCTTGTTTTAAATCTTTTTAACTTAGTGGTTGATTATGGCTAGTAGAGTACTTTCTTCCTCCTTTAAAACCCCATTAAAGTTACTTGCTTTTAACAACCTATAGCTTCTTCATTGTGTGTTTGGTGGGAGGGAAAGGGCCCCACTTATGGAAAAAGAAAGAAGAATCCAACTTGTGAAATGGGGCATCTCTAATTTAATGCTTTTTTCTTGATTTTCTTGTATTGGTAGTCTAGTGGTATTGGTGGATATGATTATTATTAGAAGTTGTTAGTAATTAGGATACAATTGTTGATTTCATAACTGTTAGTTTTAAGTTGACTGAGTGATGACTTTTGAATGCTATGTTTGTAGATTGCTGGTAAGAGTGAAGTAGTTGCAACAATGAAGAGGCCAAGAAAGAAAAAGGTATGGTTTTCATCAGCCAAGAAATTCTCAATCCCCCACTTTATTCTTTCTTTCTTTGTTTCTTCTTGCTTTTGTTTTTTACTCTTATCTTTTCCCTCTTCCCTTTTTGGTTAATGTATTAGATTCTGAGTTTTATTTCCTTTTTGGGTGTAATTGGCCATATACTCATATTAGCTTTAGTGTGTGTTTTGGATAATGCCTGATTATTGTGTTCATGGTGGAATGGCAGACACTAGGAGAACTTAAAGAGGAGGAAGTTTTGCTATTAAAGGAAAGAAGAAGCTTGGAAGATGTATGTCTACTTTTTTTTTTGTAATAATATGAGAATTGTCGTTAACTATCGTCGGATTCTCGATCGTCTTCTTGCTTAAGTTTTTTCCTTTTATAAGGGCAGGCCTTGGCTACCATAAGGCTCTCTGTGGAAAAACAAAGGGCTATGAATGGAAGCTTGAAGAAAATGAAGGTGAATCTTCATATTTTCATATTCTTCTTGTATTTTTCTCTTTATTGTGGAAGTTGCATTTACTTCTTATACCTACTAGAAATTATTATTATGACTGAAAAGCTTCTGCTTTTGCTTTCTTGCTTTTGTTTCCCCCTTTTGTTATGTCCTTTTTGCTGATGTTTGCATCTGTAAATTGAGATTTATGGTTTTGGTAGAGCTCAAGTAGAGAATCAATCCAATAGCTTGTTTAAGTGAGTGTTTTCTCAACAGATTCTTTGTTTTCAAAATAGTTCTCAAGTAGTCTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGAGCCTTCTTAAACTAAAAGTAAGTACTTTAATTGGGTAGTCTATGAGGAACAACTTTACTTCTGGAAAAGATGCCATTCTTAACAACAAAGCAAAAGAAGATGAGATTAATACAAAATGGTTAATCAAACCAAAGCTATTTTCAAGGAGCAATACTTGGTGGCATCCGGTGTTGTACTCATTCTTTGTACCCCACTCCAACCACAGTAGAAAAAGTTAAAAATATTTAAGAAAAAGAAAAAAAAAAGGTTCACCACGTGGCAAACTATGGTTGAACAACTGGGCGGACAGCAGAAGATGTTTGCAACTTTAGATGTATCTAATTTTTTTCTTTTTGATAACTTCTAAACAGTTACTTTGATGTTGCCACAACAAAAGTCATGTCACATGTGAATGCAGCCTGCAAGTGTGTTGAACACTTGGGAATATTGATCTTAAAGAACAATTAGATTTCCATTTTTTAACTGGCAAATAGAGAATATTGCAATGACACTAATTTCCTGAAGAAGCTGATAAGCAATCTTAATGTGTTACAGAAGCTAAACTGTTCTTTTTGAAATTCTACAGCTTGATCTCGAATCACAGCAAGCGATTGAAATGGTTGCAACGTCTGCTGTTCTGGAGGAGGCAAATTTCGACCAACCTCAACTACAGATGCCACTGAGATCTATATGCAGCTCTACGCCCATCGGAGTCGCTGCTTTCGGTTGCAATGGCGTTGATGCTTCTTACCAATTAACACTGCCAAATGTTTCTTGCAAACTACAGGAGATGGGAACTTTAGGGACTGTTCGTTTATTACCCGATCTTAATTTGCCTTTTCAGGAGGATTCTGGCACTGAGGCCCTATACCGAATGAGCTAGGCAGATTCAACGGAAACGAGCAAATATTAAGCTTCTTTAACTGAGGGACAAAGATCTACGACGACGACAACGACATTTGCTTCTTAATAAGATGTTGTTCCTAAATCCTAACCCTGCCATAGGCTTGAGTTACTTGTAACTGTAATTACAAAACCAATTTTCTCAGCTGCATATTCATATAACTTCCTTTTTTTCCCTTTCCATAGTACCCAAAAAATCGAGAACAGGACCGTGTCGAGACCCCGAAAAACCCTTTAGCTGTTTAGTTATATTATTCATTCACAGGTTTCTGCATCTGCTTATATTCTTTGGAGCCAATCCTCTCCCTCTCCCTCATCTCAGACTCAAAAGAGATTGATTACAAACACTGTAATTATTATTGGATAAATGCAAAATTCTATGTTCTCCACATCTAATTATTAATAATAGAATTGATATGTCATTTC AGAAAAAGAAAAAAAAAATTGTAGAGAGAGAAAGAAGAGAGAGAAAGTAATGGAATTTAGAGAGTAGATGAGGAAGTAATGAACGTGACCATCCACTTCCAAACCCATGGCCCCATCTATATAAACCTTCTGCTTTCCCCATTCCCCACTTTTTTCCTTCTTCCTTCTTCCGCCACCAAACCCATTTCTCTCTCTACTTTCTCTCTCATCGCCGCCGAGTTTACCATGTCTGACGAGGAATGGGTCGACGTTGCCCTCTCTGATGACTCTCTCGTCGTCGACTTACTTCTTCGTCTCAACCGTCCTCCCTCTCCGCCGCTCCCTCTCGACTGGTCCGTTCGTCAGCCTCGCTCTAAGCCGATTCTTCCTCGCCATGCCTCCGATTCTGCACTCAAAAACTCCGATTCCGCCGCCAGAGCCAGTCCGACCACTCCCCTCACTTGGAGCAGCGGCGGCGGTGGTGGAGCTACCTCCGTCAGCGGCGGATTTGTCGACGCATCCGACGCCGCAAGATCTAAGATTGCTGGTAAGAGTGAAGTAGTTGCAACAATGAAGAGGCCAAGAAAGAAAAAGACACTAGGAGAACTTAAAGAGGAGGAAGTTTTGCTATTAAAGGAAAGAAGAAGCTTGGAAGATGTATGCCTTGGCTACCATAAGGCTCTCTGTGGAAAAACAAAGGGCTATGAATGGAAGCTTGAAGAAAATGAAGGTGAATCTTCATATTTTCATATTCTTCTTCTTGATCTCGAATCACAGCAAGCGATTGAAATGGTTGCAACGTCTGCTGTTCTGGAGGAGGCAAATTTCGACCAACCTCAACTACAGATGCCACTGAGATCTATATGCAGCTCTACGCCCATCGGAGTCGCTGCTTTCGGTTGCAATGGCGTTGATGCTTCTTACCAATTAACACTGCCAAATGTTTCTTGCAAACTACAGGAGATGGGAACTTTAGGGACTGTTCGTTTATTACCCGATCTTAATTTGCCTTTTCAGGAGGATTCTGGCACTGAGGCCCTATACCGAATGAGCTAGGCAGATTCAACGGAAACGAGCAAATATTAAGCTTCTTTAACTGAGGGACAAAGATCTACGACGACGACAACGACATTTGCTTCTTAATAAGATGTTGTTCCTAAATCCTAACCCTGCCATAGGCTTGAGTTACTTGTAACTGTAATTACAAAACCAATTTTCTCAGCTGCATATTCATATAACTTCCTTTTTTTCCCTTTCCATAGTACCCAAAAAATCGAGAACAGGACCGTGTCGAGACCCCGAAAAACCCTTTAGCTGTTTAGTTATATTATTCATTCACAGGTTTCTGCATCTGCTTATATTCTTTGGAGCCAATCCTCTCCCTCTCCCTCATCTCAGACTCAAAAGAGATTGATTACAAACACTGTAATTATTATTGGATAAATGCAAAATTCTATGTTCTCCACATCTAATTATTAATAATAGAATTGATATGTCATTTC ATGAACGTGACCATCCACTTCCAAACCCATGGCCCCATCTATATAAACCTTCTGCTTTCCCCATTCCCCACTTTTTTCCTTCTTCCTTCTTCCGCCACCAAACCCATTTCTCTCTCTACTTTCTCTCTCATCGCCGCCGAGTTTACCATGTCTGACGAGGAATGGGTCGACGTTGCCCTCTCTGATGACTCTCTCGTCGTCGACTTACTTCTTCGTCTCAACCGTCCTCCCTCTCCGCCGCTCCCTCTCGACTGGTCCGTTCGTCAGCCTCGCTCTAAGCCGATTCTTCCTCGCCATGCCTCCGATTCTGCACTCAAAAACTCCGATTCCGCCGCCAGAGCCAGTCCGACCACTCCCCTCACTTGGAGCAGCGGCGGCGGTGGTGGAGCTACCTCCGTCAGCGGCGGATTTGTCGACGCATCCGACGCCGCAAGATCTAAGATTGCTGGTAAGAGTGAAGTAGTTGCAACAATGAAGAGGCCAAGAAAGAAAAAGACACTAGGAGAACTTAAAGAGGAGGAAGTTTTGCTATTAAAGGAAAGAAGAAGCTTGGAAGATGTATGCCTTGGCTACCATAAGGCTCTCTGTGGAAAAACAAAGGGCTATGAATGGAAGCTTGAAGAAAATGAAGGTGAATCTTCATATTTTCATATTCTTCTTCTTGATCTCGAATCACAGCAAGCGATTGAAATGGTTGCAACGTCTGCTGTTCTGGAGGAGGCAAATTTCGACCAACCTCAACTACAGATGCCACTGAGATCTATATGCAGCTCTACGCCCATCGGAGTCGCTGCTTTCGGTTGCAATGGCGTTGATGCTTCTTACCAATTAACACTGCCAAATGTTTCTTGCAAACTACAGGAGATGGGAACTTTAGGGACTGTTCGTTTATTACCCGATCTTAATTTGCCTTTTCAGGAGGATTCTGGCACTGAGGCCCTATACCGAATGAGCTAG MNVTIHFQTHGPIYINLLLSPFPTFFLLPSSATKPISLSTFSLIAAEFTMSDEEWVDVALSDDSLVVDLLLRLNRPPSPPLPLDWSVRQPRSKPILPRHASDSALKNSDSAARASPTTPLTWSSGGGGGATSVSGGFVDASDAARSKIAGKSEVVATMKRPRKKKTLGELKEEEVLLLKERRSLEDVCLGYHKALCGKTKGYEWKLEENEGESSYFHILLLDLESQQAIEMVATSAVLEEANFDQPQLQMPLRSICSSTPIGVAAFGCNGVDASYQLTLPNVSCKLQEMGTLGTVRLLPDLNLPFQEDSGTEALYRMS Homology
BLAST of Lsi02G026770 vs. ExPASy TrEMBL
Match: A0A6J1GQQ9 (uncharacterized protein LOC111456207 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456207 PE=4 SV=1) HSP 1 Score: 347.8 bits (891), Expect = 4.7e-92 Identity = 203/278 (73.02%), Postives = 217/278 (78.06%), Query Frame = 0
BLAST of Lsi02G026770 vs. ExPASy TrEMBL
Match: A0A6J1JT79 (uncharacterized protein LOC111488119 isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC111488119 PE=4 SV=1) HSP 1 Score: 347.1 bits (889), Expect = 8.1e-92 Identity = 201/275 (73.09%), Postives = 216/275 (78.55%), Query Frame = 0
BLAST of Lsi02G026770 vs. ExPASy TrEMBL
Match: A0A1S3CDM0 (uncharacterized protein LOC103499830 OS=Cucumis melo OX=3656 GN=LOC103499830 PE=4 SV=1) HSP 1 Score: 344.0 bits (881), Expect = 6.8e-91 Identity = 201/270 (74.44%), Postives = 210/270 (77.78%), Query Frame = 0
BLAST of Lsi02G026770 vs. ExPASy TrEMBL
Match: A0A6J1GPA3 (uncharacterized protein LOC111456207 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456207 PE=4 SV=1) HSP 1 Score: 343.2 bits (879), Expect = 1.2e-90 Identity = 203/279 (72.76%), Postives = 217/279 (77.78%), Query Frame = 0
BLAST of Lsi02G026770 vs. ExPASy TrEMBL
Match: A0A6J1JV44 (uncharacterized protein LOC111488119 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111488119 PE=4 SV=1) HSP 1 Score: 342.4 bits (877), Expect = 2.0e-90 Identity = 201/276 (72.83%), Postives = 216/276 (78.26%), Query Frame = 0
BLAST of Lsi02G026770 vs. NCBI nr
Match: XP_038896159.1 (uncharacterized protein LOC120084450 isoform X1 [Benincasa hispida]) HSP 1 Score: 443.4 bits (1139), Expect = 1.7e-120 Identity = 244/318 (76.73%), Postives = 260/318 (81.76%), Query Frame = 0
BLAST of Lsi02G026770 vs. NCBI nr
Match: XP_038896160.1 (uncharacterized protein LOC120084450 isoform X2 [Benincasa hispida]) HSP 1 Score: 402.9 bits (1034), Expect = 2.6e-108 Identity = 227/318 (71.38%), Postives = 242/318 (76.10%), Query Frame = 0
BLAST of Lsi02G026770 vs. NCBI nr
Match: KAG6575620.1 (hypothetical protein SDJN03_26259, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 349.7 bits (896), Expect = 2.6e-92 Identity = 203/280 (72.50%), Postives = 218/280 (77.86%), Query Frame = 0
BLAST of Lsi02G026770 vs. NCBI nr
Match: XP_023548547.1 (uncharacterized protein LOC111807180 isoform X5 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 349.4 bits (895), Expect = 3.4e-92 Identity = 203/276 (73.55%), Postives = 217/276 (78.62%), Query Frame = 0
BLAST of Lsi02G026770 vs. NCBI nr
Match: XP_022953784.1 (uncharacterized protein LOC111456207 isoform X2 [Cucurbita moschata] >KAG7014171.1 hypothetical protein SDJN02_24345 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 347.8 bits (891), Expect = 9.8e-92 Identity = 203/278 (73.02%), Postives = 217/278 (78.06%), Query Frame = 0
BLAST of Lsi02G026770 vs. TAIR 10
Match: AT1G15800.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80610.1); Has 56 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 94.4 bits (233), Expect = 1.8e-19 Identity = 72/158 (45.57%), Postives = 87/158 (55.06%), Query Frame = 0
BLAST of Lsi02G026770 vs. TAIR 10
Match: AT1G80610.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15800.1); Has 73 Blast hits to 69 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 55; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). ) HSP 1 Score: 92.8 bits (229), Expect = 5.3e-19 Identity = 87/230 (37.83%), Postives = 111/230 (48.26%), Query Frame = 0
BLAST of Lsi02G026770 vs. TAIR 10
Match: AT4G32030.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 70.5 bits (171), Expect = 2.8e-12 Identity = 63/159 (39.62%), Postives = 84/159 (52.83%), Query Frame = 0
BLAST of Lsi02G026770 vs. TAIR 10
Match: AT4G32030.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80610.1); Has 63 Blast hits to 59 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). ) HSP 1 Score: 68.9 bits (167), Expect = 8.2e-12 Identity = 62/157 (39.49%), Postives = 83/157 (52.87%), Query Frame = 0
BLAST of Lsi02G026770 vs. TAIR 10
Match: AT5G25210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32030.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 53.1 bits (126), Expect = 4.6e-07 Identity = 39/119 (32.77%), Postives = 65/119 (54.62%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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