Lsi02G026700 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G026700
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	40S ribosomal protein S12
Location	chr02: 33190166 .. 33192828 (-)
RNA-Seq Expression	Lsi02G026700
Synteny	Lsi02G026700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAATCTTCTCTACAAACTCTCTCCCTCTCTCAGTCCTGCCGCCGCCGCCATCTCTCAATCTCTGGTAAGCTTCTTGTTCTCTCTTTCTAAATCTCCGGCAAGCAATTCATGTTCTCTTCCCACATGTCCATTGTTATCTCCTTTCTTTCGTCCACAAATACACAGATCGTCTTATTTTATCCCTGTCGTTCTCATATTTTCATCTCACTGCTGTTTATTGATCTTTTACTTTGATTATCATAATCGAAAAACCGAACTGATTAGTGGTTTACTCTATGTGTCTGTTATTGATTCAAACTGGCTGATTTAGGGTTACTTATGTTTCTTTTGTCTAATTCTTGTTTGTTTTTGCAGTTTTTTTTCTTGCAACAGGAAGGAGGAAGAACTTCTAATCAAGAAGAAAAATGTCAGCGTGAGTGGAAACTTGTTTATGACAATTATCTTCCTCGTTGATTCCCATTTTTTTGTGTTGTATCTGGTTGCGTTCTTTTCGATATCTTAGAAATTGACGATGCCTTGGTTTTCTTAGAAGTAGAATCTGCTGCTTTCAATCGACTATTCGAGAGTATTTGCTATTCTTCAGTATGAATAAGAAAAGAGTTGGAAACTTGATTGGTTAAGGTGATAAAGCAATCATTCTTGATGCAAATTATTTGTTTTGGTCATTGGTCATATAAAATGTAGAGTTTTGTAGTTCAATATGTGTTTTATACGTTAATCTGTTAGTGTTCTTTGCATGGGACTAAGAGTTGCTGGGGAGTCGTGATACCTATATTACACGTTCAATAGTGAACTACTGAAATTTGAGGCTTTTTTTTCTGGTGATGTCATTATATTTGAGTCCATGACTATGCAATTGGCTTCCATTGTTGACAGAAGCATGCCATAGAAGGATATTGTATTCCCTTTTAACTTGATTTCTTTTGCAGTGATGAAGTTGCAGTTGTGGCTGAGGCTCCTGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTGGCTCACGGTGGGCTTGTTCGAGGCCTTCACGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCCCTTTGTGCAGAGCACAACGTTAACTTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAGTGGGCCGGTGTAAGTGTTTAATCTTATCTAGACACATTTTCTAACATTCAATCTGCAGATAAAATGGTTTATCTTCTGCTCTTTTTTTGTTGATATTTGGCACCATTGTGCACTATGTTACTCTTTGTACCAAGATTGAACCTGTACCAGCTACATGTTTTACATGTTCTGAATTACATAACAATATAAACTAAATGTATATATTCCAAATCCAGAGAATTTGTTTGATCCTCACTTAAAGGGAACGGTTAAAATTACCCTGAAAAGTTTGTTTTTGCCTTCAAATTTTAATATTTGCATTAACCATCATGAGTTGGCTTGGGTGATCCTAGGTTGGCCTCGTGCTAAAAAATGATATATAGTCTCAATAAATGATTAGGAGGTTATGGGTTCAACCCATGGTGGCCACATATCTAGGATCTAATTTCCTACGAGTTCTCTTGACACCCAAATGTTGTAGGGTCAAATGAGTTGTCCTGTGAGATTAGTCGAGGTGTGCGTAAGCTGACCCGGACACTCACGGATATAAAATAAAGTTTTAATATTTGCATTCTACACCATCAATTTGAGTTTGATATAAAGTTGCGACTAATATACATCTACCTATATTACTTAGCAAAGATTATGTGAGTTCAATAAATCATTTTTTTTATATTTGGTCTAATGCAGCTATGCAAGATTGATTCCGAAGGAAAGGCAAGGAAAGTTGTTGGTTGCTCTTGTGTTGTAGTTAAGGTACATATATGTGTCCATTCCCTTCCATAGCAAATATTCTGTTCCTCTTCTTTTTAAACAATACGTTTACTTGAATTTTGAATGTGTTATCCCAGGACTTTGGGGAAGATCACGAGGCACTTCACATCGTCCAGAAGCATGTGAGTTCAAATTGATTACCAAAATGGTGTCTGTTGAGACTACAGTTGTTGGTCTCATTTAGAAAGTTTTTGATCGTTAGTTATGTTTAGATTTGGTGCACTGTTGTTGCTTAACACCTTCACCCTATAATGTGTTTTTCTTTGTTGATTGATTGGAAAGACTAGTTTTTATCTTCTGAGTCCATTGATGTGGAGCTCATTATCATTCCGGCCAACGTAACAATTTATTCATCAAGAGTCTCCTTGCCCATGGGAAAAGTGGAATTGATAATATTTATCATCTTTATTGCTGAATTCATATTTAGATTTATCTACTTTCGTTCTATTTGCGTAGTATTGATGTTATTTCTGTTATTTGCCGTCGAAAGAAAGTGGGAATATACGAACAATGCAAGTTTTGAAGTAGGTTTGAATAAACTTTTTAAAGCTAACTGCTTTTAAAAAGGTGTTTCTTAGTTACTCTTTTAGTCAATTAGATCAACTTGGGATTGTATATATAATGTTAGATCATGACCTATCTTGACATTTCGAAATCAATTCGATTTGATCATTTATATAATCCTACTTTTCTTCCCTCC

mRNA sequence

CTAATCTTCTCTACAAACTCTCTCCCTCTCTCAGTCCTGCCGCCGCCGCCATCTCTCAATCTCTGTTTTTTTTCTTGCAACAGGAAGGAGGAAGAACTTCTAATCAAGAAGAAAAATGTCAGCTGATGAAGTTGCAGTTGTGGCTGAGGCTCCTGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTGGCTCACGGTGGGCTTGTTCGAGGCCTTCACGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCCCTTTGTGCAGAGCACAACGTTAACTTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAGTGGGCCGGTGGTCAAATGAGTTGTCCTGTGAGATTAGTCGAGGTGTGCCTATGCAAGATTGATTCCGAAGGAAAGGCAAGGAAAGTTGTTGGTTGCTCTTGTGTTGTAGTTAAGGACTTTGGGGAAGATCACGAGGCACTTCACATCGTCCAGAAGCATGTGAGTTCAAATTGATTACCAAAATGGTGTCTGTTGAGACTACAGTTGTTGGTCTCATTTAGAAAGTTTTTGATCGTTAGTTATGTTTAGATTTGGTGCACTGTTGTTGCTTAACACCTTCACCCTATAATGTGTTTTTCTTTGTTGATTGATTGGAAAGACTAGTTTTTATCTTCTGAGTCCATTGATGTGGAGCTCATTATCATTCCGGCCAACGTAACAATTTATTCATCAAGAGTCTCCTTGCCCATGGGAAAAGTGGAATTGATAATATTTATCATCTTTATTGCTGAATTCATATTTAGATTTATCTACTTTCGTTCTATTTGCGTAGTATTGATGTTATTTCTGTTATTTGCCGTCGAAAGAAAGTGGGAATATACGAACAATGCAAGTTTTGAAGTAGGTTTGAATAAACTTTTTAAAGCTAACTGCTTTTAAAAAGGTGTTTCTTAGTTACTCTTTTAGTCAATTAGATCAACTTGGGATTGTATATATAATGTTAGATCATGACCTATCTTGACATTTCGAAATCAATTCGATTTGATCATTTATATAATCCTACTTTTCTTCCCTCC

Coding sequence (CDS)

ATGTCAGCTGATGAAGTTGCAGTTGTGGCTGAGGCTCCTGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTGGCTCACGGTGGGCTTGTTCGAGGCCTTCACGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCCCTTTGTGCAGAGCACAACGTTAACTTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAGTGGGCCGGTGGTCAAATGAGTTGTCCTGTGAGATTAGTCGAGGTGTGCCTATGCAAGATTGATTCCGAAGGAAAGGCAAGGAAAGTTGTTGGTTGCTCTTGTGTTGTAGTTAAGGACTTTGGGGAAGATCACGAGGCACTTCACATCGTCCAGAAGCATGTGAGTTCAAATTGA

Protein sequence

MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN

Homology

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BLAST of Lsi02G026700 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 4.5e-53
Identity = 104/147 (70.75%), Postives = 120/147 (81.63%), Query Frame = 0


Query: 6   VAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDC 65
           V    EAP P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC
Sbjct: 9   VVAPVEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDC 68

Query: 66  NQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKIDSEGKARKV 125
           +QPDYVKLVKALCAEHNV+L+TVPSAKTLGEWAG             LCKID+EGKARKV
Sbjct: 69  DQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAG-------------LCKIDTEGKARKV 128

Query: 126 VGCSCVVVKDFGEDHEALHIVQKHVSS 153
           VGCSC+VVKD+GE+ E L+IVQ++V S
Sbjct: 129 VGCSCIVVKDYGEESEGLNIVQQYVKS 142

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BLAST of Lsi02G026700 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 8.7e-49
Identity = 100/157 (63.69%), Postives = 116/157 (73.89%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKI 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAG             LCKI
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAG-------------LCKI 120

Query: 121 DSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 154
           DSEG ARKVVGCSC+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 DSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144

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BLAST of Lsi02G026700 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 6.2e-47
Identity = 101/156 (64.74%), Postives = 113/156 (72.44%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKI 120
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAG             LCKI
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAG-------------LCKI 120

Query: 121 DSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 153
           DSEG ARKVVGCSC+VVKDFGE+  AL IV KH++S
Sbjct: 121 DSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143

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BLAST of Lsi02G026700 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.7e-34
Identity = 71/134 (52.99%), Postives = 93/134 (69.40%), Query Frame = 0


Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKIDSEGKARKVVGCSCVVVKD 135
           ALCAEH +NL+ V   K LGEW G             LCKID EGK RKVVGCSCVVVKD
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVG-------------LCKIDREGKPRKVVGCSCVVVKD 126

Query: 136 FGEDHEALHIVQKH 150
           +G++ +A  +++++
Sbjct: 127 YGKESQAKDVIEEY 127

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BLAST of Lsi02G026700 vs. ExPASy Swiss-Prot
Match: P25398 (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3)

HSP 1 Score: 146.4 bits (368), Expect = 2.7e-34
Identity = 71/134 (52.99%), Postives = 93/134 (69.40%), Query Frame = 0


Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKIDSEGKARKVVGCSCVVVKD 135
           ALCAEH +NL+ V   K LGEW G             LCKID EGK RKVVGCSCVVVKD
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVG-------------LCKIDREGKPRKVVGCSCVVVKD 126

Query: 136 FGEDHEALHIVQKH 150
           +G++ +A  +++++
Sbjct: 127 YGKESQAKDVIEEY 127

[Close]

BLAST of Lsi02G026700 vs. ExPASy TrEMBL
Match: A0A6J1GQC3 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.2e-69
Identity = 140/153 (91.50%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKIDSEG 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG             LCKIDSEG
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG-------------LCKIDSEG 120

Query: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 154
           KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Lsi02G026700 vs. ExPASy TrEMBL
Match: A0A6J1JWC7 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111488083 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.5e-69
Identity = 139/153 (90.85%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEV VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVTVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKIDSEG 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG             LCKIDSEG
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG-------------LCKIDSEG 120

Query: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 154
           KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Lsi02G026700 vs. ExPASy TrEMBL
Match: A0A5D3BJY5 (40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001870 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.9e-69
Identity = 139/153 (90.85%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADE AVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKIDSEG 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG             LCKIDSEG
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG-------------LCKIDSEG 120

Query: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 154
           KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Lsi02G026700 vs. ExPASy TrEMBL
Match: A0A0A0LM61 (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.9e-69
Identity = 139/153 (90.85%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADE AVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKIDSEG 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG             LCKIDSEG
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG-------------LCKIDSEG 120

Query: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 154
           KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Lsi02G026700 vs. ExPASy TrEMBL
Match: A0A0A0KA08 (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.9e-69
Identity = 138/153 (90.20%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKIDSEG 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAG             LCKIDSEG
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAG-------------LCKIDSEG 120

Query: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 154
           KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Lsi02G026700 vs. NCBI nr
Match: XP_022954225.1 (40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosomal protein S12-like [Cucurbita moschata] >KAG6575626.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014180.1 40S ribosomal protein S12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 272.3 bits (695), Expect = 2.5e-69
Identity = 140/153 (91.50%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKIDSEG 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG             LCKIDSEG
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG-------------LCKIDSEG 120

Query: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 154
           KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Lsi02G026700 vs. NCBI nr
Match: XP_038896811.1 (40S ribosomal protein S12-like [Benincasa hispida])

HSP 1 Score: 270.8 bits (691), Expect = 7.3e-69
Identity = 139/153 (90.85%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAP PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPVPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKIDSEG 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG             LCKIDSEG
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG-------------LCKIDSEG 120

Query: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 154
           KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Lsi02G026700 vs. NCBI nr
Match: XP_022991483.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 270.8 bits (691), Expect = 7.3e-69
Identity = 139/153 (90.85%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEV VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVTVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKIDSEG 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG             LCKIDSEG
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG-------------LCKIDSEG 120

Query: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 154
           KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Lsi02G026700 vs. NCBI nr
Match: XP_023548009.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >XP_023548010.1 40S ribosomal protein S12-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548011.1 40S ribosomal protein S12-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548012.1 40S ribosomal protein S12-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023548013.1 40S ribosomal protein S12-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.8 bits (691), Expect = 7.3e-69
Identity = 139/153 (90.85%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAE PAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAETPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKIDSEG 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG             LCKIDSEG
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG-------------LCKIDSEG 120

Query: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 154
           KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Lsi02G026700 vs. NCBI nr
Match: XP_004147008.1 (40S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribosomal protein S12-like [Cucumis melo] >XP_031736838.1 40S ribosomal protein S12 [Cucumis sativus] >KAA0045670.1 40S ribosomal protein S12 [Cucumis melo var. makuwa] >KGN61872.1 hypothetical protein Csa_006022 [Cucumis sativus] >TYJ99613.1 40S ribosomal protein S12 [Cucumis melo var. makuwa])

HSP 1 Score: 269.6 bits (688), Expect = 1.6e-68
Identity = 139/153 (90.85%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADE AVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKIDSEG 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG             LCKIDSEG
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG-------------LCKIDSEG 120

Query: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 154
           KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 KARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Lsi02G026700 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 194.5 bits (493), Expect = 6.2e-50
Identity = 100/157 (63.69%), Postives = 116/157 (73.89%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKI 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAG             LCKI
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAG-------------LCKI 120

Query: 121 DSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 154
           DSEG ARKVVGCSC+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 DSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Lsi02G026700 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 194.5 bits (493), Expect = 6.2e-50
Identity = 100/157 (63.69%), Postives = 116/157 (73.89%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKI 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAG             LCKI
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAG-------------LCKI 120

Query: 121 DSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 154
           DSEG ARKVVGCSC+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 DSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Lsi02G026700 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 194.5 bits (493), Expect = 6.2e-50
Identity = 100/157 (63.69%), Postives = 116/157 (73.89%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKI 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAG             LCKI
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAG-------------LCKI 120

Query: 121 DSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 154
           DSEG ARKVVGCSC+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 DSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Lsi02G026700 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 188.3 bits (477), Expect = 4.4e-48
Identity = 101/156 (64.74%), Postives = 113/156 (72.44%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKI 120
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAG             LCKI
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAG-------------LCKI 120

Query: 121 DSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 153
           DSEG ARKVVGCSC+VVKDFGE+  AL IV KH++S
Sbjct: 121 DSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of Lsi02G026700 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 188.3 bits (477), Expect = 4.4e-48
Identity = 101/156 (64.74%), Postives = 113/156 (72.44%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGGQMSCPVRLVEVCLCKI 120
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAG             LCKI
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAG-------------LCKI 120

Query: 121 DSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 153
           DSEG ARKVVGCSC+VVKDFGE+  AL IV KH++S
Sbjct: 121 DSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143

The following BLAST results are available for this feature:

BLAST of Lsi02G026700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHS0	4.5e-53	70.75	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
Q9SKZ3	8.7e-49	63.69	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
Q9S9P1	6.2e-47	64.74	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
Q76I81	2.7e-34	52.99	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]
P25398	2.7e-34	52.99	40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3	[more]

BLAST of Lsi02G026700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQC3	1.2e-69	91.50	40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=...	[more]
A0A6J1JWC7	3.5e-69	90.85	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111488083 PE=3 SV=1	[more]
A0A5D3BJY5	7.9e-69	90.85	40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0LM61	7.9e-69	90.85	40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1	[more]
A0A0A0KA08	7.9e-69	90.20	40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1	[more]

BLAST of Lsi02G026700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954225.1	2.5e-69	91.50	40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosoma...	[more]
XP_038896811.1	7.3e-69	90.85	40S ribosomal protein S12-like [Benincasa hispida]	[more]
XP_022991483.1	7.3e-69	90.85	40S ribosomal protein S12-like [Cucurbita maxima]	[more]
XP_023548009.1	7.3e-69	90.85	40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >XP_023548010.1 40S ...	[more]
XP_004147008.1	1.6e-68	90.85	40S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribos...	[more]

BLAST of Lsi02G026700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32060.1	6.2e-50	63.69	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.3	6.2e-50	63.69	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.2	6.2e-50	63.69	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.2	4.4e-48	64.74	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.1	4.4e-48	64.74	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 30..43 score: 54.55 coord: 44..60 score: 48.13 coord: 85..106 score: 36.78
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 7..152
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 26..44
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 26..102 e-value: 2.2E-23 score: 81.8
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 4..153 e-value: 5.7E-50 score: 170.1
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 19..150
None	No IPR available	PANTHER	PTHR11843:SF20	40S RIBOSOMAL PROTEIN S12	coord: 7..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G026700.1	Lsi02G026700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome