Lsi02G026360 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G026360
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	4-coumarate:CoA ligase
Location	chr02: 32784508 .. 32784900 (-)
RNA-Seq Expression	Lsi02G026360
Synteny	Lsi02G026360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGATGTGGAGGCGGGAGAAGTGCCGGTGGCGTTTGTGGTGAAGGCGAATGACAGCATAATAACAGAGGAAGAAGTAAAGCAATTCATAACAAAACAAGTGGTGTTCTACAAGAGGCTAAAACGTGTGTTTTTCGTCAACACTATTCCAAAGGCTCCGTCAGGCAAAATCCTTAGAAAAGAACTCAGAGCAAAACTGGCTTCTGGTGCTTACAATTAAACTCCTAAATTGCTCATTTATTGTCACCACCGTAAATTGATATCATTTTTTAAAAAGAAAAAAAAATTAAGATGATGTACCATATTACTATTTGATATGTATTATTCAAAGTGTTTGTGAATTGTTTTATAATCTTTTAATAGAGAAAATATGCTAAATATTTGAATCTAA

mRNA sequence

ATGCCGGATGTGGAGGCGGGAGAAGTGCCGGTGGCGTTTGTGGTGAAGGCGAATGACAGCATAATAACAGAGGAAGAAGTAAAGCAATTCATAACAAAACAAGTGGTGTTCTACAAGAGGCTAAAACGTGTGTTTTTCGTCAACACTATTCCAAAGGCTCCGTCAGGCAAAATCCTTAGAAAAGAACTCAGAGCAAAACTGGCTTCTGGTGCTTACAATTAAACTCCTAAATTGCTCATTTATTGTCACCACCGTAAATTGATATCATTTTTTAAAAAGAAAAAAAAATTAAGATGATGTACCATATTACTATTTGATATGTATTATTCAAAGTGTTTGTGAATTGTTTTATAATCTTTTAATAGAGAAAATATGCTAAATATTTGAATCTAA

Coding sequence (CDS)

ATGCCGGATGTGGAGGCGGGAGAAGTGCCGGTGGCGTTTGTGGTGAAGGCGAATGACAGCATAATAACAGAGGAAGAAGTAAAGCAATTCATAACAAAACAAGTGGTGTTCTACAAGAGGCTAAAACGTGTGTTTTTCGTCAACACTATTCCAAAGGCTCCGTCAGGCAAAATCCTTAGAAAAGAACTCAGAGCAAAACTGGCTTCTGGTGCTTACAATTAA

Protein sequence

MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILRKELRAKLASGAYN

Homology

[Close]

BLAST of Lsi02G026360 vs. ExPASy Swiss-Prot
Match: O24145 (4-coumarate--CoA ligase 1 OS=Nicotiana tabacum OX=4097 GN=4CL1 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.3e-23
Identity = 53/73 (72.60%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILR 60
           M D +AGEVPVAFVV++N S ITE+EVK FI+KQV+FYKR+KRVFFV T+PK+PSGKILR
Sbjct: 475 MKDEQAGEVPVAFVVRSNGSAITEDEVKDFISKQVIFYKRVKRVFFVETVPKSPSGKILR 534

Query: 61  KELRAKLASGAYN 74
           K+LRA+LA+G  N
Sbjct: 535 KDLRARLAAGVPN 547

[Close]

BLAST of Lsi02G026360 vs. ExPASy Swiss-Prot
Match: O24146 (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum OX=4097 GN=4CL2 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.3e-23
Identity = 54/73 (73.97%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILR 60
           M D +AGEVPVAFVV++N S ITE+EVK FI+KQV+FYKR+KRVFFV+ IPK+PSGKILR
Sbjct: 470 MKDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVDAIPKSPSGKILR 529

Query: 61  KELRAKLASGAYN 74
           K+LRAKLA+G  N
Sbjct: 530 KDLRAKLAAGLPN 542

[Close]

BLAST of Lsi02G026360 vs. ExPASy Swiss-Prot
Match: P31684 (4-coumarate--CoA ligase 1 OS=Solanum tuberosum OX=4113 GN=4CL1 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.0e-23
Identity = 53/73 (72.60%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILR 60
           M D +AGEVPVAFVV++N S ITE+EVK FI+KQV+FYKR+KRVFFV T+PK+PSGKILR
Sbjct: 473 MIDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVETVPKSPSGKILR 532

Query: 61  KELRAKLASGAYN 74
           K+LRA+LA+G  N
Sbjct: 533 KDLRARLAAGISN 545

[Close]

BLAST of Lsi02G026360 vs. ExPASy Swiss-Prot
Match: P31685 (4-coumarate--CoA ligase 2 OS=Solanum tuberosum OX=4113 GN=4CL2 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.0e-23
Identity = 53/73 (72.60%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILR 60
           M D +AGEVPVAFVV++N S ITE+EVK FI+KQV+FYKR+KRVFFV T+PK+PSGKILR
Sbjct: 473 MIDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVETVPKSPSGKILR 532

Query: 61  KELRAKLASGAYN 74
           K+LRA+LA+G  N
Sbjct: 533 KDLRARLAAGISN 545

[Close]

BLAST of Lsi02G026360 vs. ExPASy Swiss-Prot
Match: I3PB37 (4-coumarate:CoA ligase 1 OS=Petunia hybrida OX=4102 GN=4CL1 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.9e-23
Identity = 52/73 (71.23%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILR 60
           M D +AGEVPVAFVV++N S ITE+EVK F++KQV+FYKR+KRVFFV T+PK+PSGKILR
Sbjct: 472 MKDEQAGEVPVAFVVRSNGSDITEDEVKDFVSKQVIFYKRIKRVFFVETVPKSPSGKILR 531

Query: 61  KELRAKLASGAYN 74
           K+LRA+LA+G  N
Sbjct: 532 KDLRARLAAGVPN 544

[Close]

BLAST of Lsi02G026360 vs. ExPASy TrEMBL
Match: A0A0A0K658 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430250 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.2e-28
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1   MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILR 60
           MPDVEAGEVPVAFVVKAN   ITEEEVKQFITKQVVFYKRLKRVFFVN IPKAPSGKILR
Sbjct: 470 MPDVEAGEVPVAFVVKANGGAITEEEVKQFITKQVVFYKRLKRVFFVNAIPKAPSGKILR 529

Query: 61  KELRAKLASGAYN 74
           KELRAKLASGAYN
Sbjct: 530 KELRAKLASGAYN 542

[Close]

BLAST of Lsi02G026360 vs. ExPASy TrEMBL
Match: A0A5A7US61 (4-coumarate--CoA ligase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001380 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-27
Identity = 68/73 (93.15%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILR 60
           MPDVEAGEVPVAFVVKAN   ITEEEVKQFITKQVVFYKRLKRVFFVN IPKAPSGKILR
Sbjct: 470 MPDVEAGEVPVAFVVKANGGAITEEEVKQFITKQVVFYKRLKRVFFVNAIPKAPSGKILR 529

Query: 61  KELRAKLASGAYN 74
           KELRAKLA GAYN
Sbjct: 530 KELRAKLALGAYN 542

[Close]

BLAST of Lsi02G026360 vs. ExPASy TrEMBL
Match: A0A1S3CE71 (4-coumarate--CoA ligase 1-like OS=Cucumis melo OX=3656 GN=LOC103499867 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-27
Identity = 68/73 (93.15%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILR 60
           MPDVEAGEVPVAFVVKAN   ITEEEVKQFITKQVVFYKRLKRVFFVN IPKAPSGKILR
Sbjct: 470 MPDVEAGEVPVAFVVKANGGAITEEEVKQFITKQVVFYKRLKRVFFVNAIPKAPSGKILR 529

Query: 61  KELRAKLASGAYN 74
           KELRAKLA GAYN
Sbjct: 530 KELRAKLALGAYN 542

[Close]

BLAST of Lsi02G026360 vs. ExPASy TrEMBL
Match: A0A5A7UUG4 (4-coumarate--CoA ligase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001360 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.6e-27
Identity = 67/73 (91.78%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILR 60
           MPDVEAGE+PVAFVVKAN   ITEEEVKQFITKQVVFYKRLKRVFFVN IPKAPSGKILR
Sbjct: 75  MPDVEAGEMPVAFVVKANGGAITEEEVKQFITKQVVFYKRLKRVFFVNAIPKAPSGKILR 134

Query: 61  KELRAKLASGAYN 74
           KELRAKLA GAYN
Sbjct: 135 KELRAKLALGAYN 147

[Close]

BLAST of Lsi02G026360 vs. ExPASy TrEMBL
Match: A0A0A0K8H9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430240 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-26
Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILR 60
           MPDVEAGEVPVAFV+KAN   I+EEEVKQFI KQVVFYKRLKRVFFVN IPKAPSGKILR
Sbjct: 470 MPDVEAGEVPVAFVMKANGGAISEEEVKQFIAKQVVFYKRLKRVFFVNAIPKAPSGKILR 529

Query: 61  KELRAKLASGAYN 74
           KELRAKLASGAYN
Sbjct: 530 KELRAKLASGAYN 542

[Close]

BLAST of Lsi02G026360 vs. NCBI nr
Match: XP_004135893.3 (4-coumarate--CoA ligase 2 [Cucumis sativus] >KAE8646417.1 hypothetical protein Csa_015838 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 8.7e-28
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1   MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILR 60
           MPDVEAGEVPVAFVVKAN   ITEEEVKQFITKQVVFYKRLKRVFFVN IPKAPSGKILR
Sbjct: 470 MPDVEAGEVPVAFVVKANGGAITEEEVKQFITKQVVFYKRLKRVFFVNAIPKAPSGKILR 529

Query: 61  KELRAKLASGAYN 74
           KELRAKLASGAYN
Sbjct: 530 KELRAKLASGAYN 542

[Close]

BLAST of Lsi02G026360 vs. NCBI nr
Match: XP_038897021.1 (4-coumarate--CoA ligase 1-like [Benincasa hispida])

HSP 1 Score: 131.0 bits (328), Expect = 4.3e-27
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1   MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILR 60
           MPDVEAGEVPVAFVVK N   ITEEEVKQFI+KQVVFYKRLKRVFFVNTIPKAPSGKILR
Sbjct: 470 MPDVEAGEVPVAFVVKTNGGAITEEEVKQFISKQVVFYKRLKRVFFVNTIPKAPSGKILR 529

Query: 61  KELRAKLASGAYN 74
           KELRA+LASGAYN
Sbjct: 530 KELRARLASGAYN 542

[Close]

BLAST of Lsi02G026360 vs. NCBI nr
Match: KAA0058682.1 (4-coumarate--CoA ligase 1-like [Cucumis melo var. makuwa] >TYK10488.1 4-coumarate--CoA ligase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 4.3e-27
Identity = 68/73 (93.15%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILR 60
           MPDVEAGEVPVAFVVKAN   ITEEEVKQFITKQVVFYKRLKRVFFVN IPKAPSGKILR
Sbjct: 470 MPDVEAGEVPVAFVVKANGGAITEEEVKQFITKQVVFYKRLKRVFFVNAIPKAPSGKILR 529

Query: 61  KELRAKLASGAYN 74
           KELRAKLA GAYN
Sbjct: 530 KELRAKLALGAYN 542

[Close]

BLAST of Lsi02G026360 vs. NCBI nr
Match: XP_008461216.1 (PREDICTED: 4-coumarate--CoA ligase 1-like [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 4.3e-27
Identity = 68/73 (93.15%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILR 60
           MPDVEAGEVPVAFVVKAN   ITEEEVKQFITKQVVFYKRLKRVFFVN IPKAPSGKILR
Sbjct: 470 MPDVEAGEVPVAFVVKANGGAITEEEVKQFITKQVVFYKRLKRVFFVNAIPKAPSGKILR 529

Query: 61  KELRAKLASGAYN 74
           KELRAKLA GAYN
Sbjct: 530 KELRAKLALGAYN 542

[Close]

BLAST of Lsi02G026360 vs. NCBI nr
Match: KAA0058680.1 (4-coumarate--CoA ligase 1-like [Cucumis melo var. makuwa] >TYK10486.1 4-coumarate--CoA ligase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 9.6e-27
Identity = 67/73 (91.78%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILR 60
           MPDVEAGE+PVAFVVKAN   ITEEEVKQFITKQVVFYKRLKRVFFVN IPKAPSGKILR
Sbjct: 75  MPDVEAGEMPVAFVVKANGGAITEEEVKQFITKQVVFYKRLKRVFFVNAIPKAPSGKILR 134

Query: 61  KELRAKLASGAYN 74
           KELRAKLA GAYN
Sbjct: 135 KELRAKLALGAYN 147

[Close]

BLAST of Lsi02G026360 vs. TAIR 10
Match: AT3G21240.1 (4-coumarate:CoA ligase 2 )

HSP 1 Score: 103.6 bits (257), Expect = 6.9e-23
Identity = 49/73 (67.12%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILR 60
           M + +AGEVPVAFVV++ DS I+E+E+KQF++KQVVFYKR+ +VFF ++IPKAPSGKILR
Sbjct: 484 MKEEDAGEVPVAFVVRSKDSNISEDEIKQFVSKQVVFYKRINKVFFTDSIPKAPSGKILR 543

Query: 61  KELRAKLASGAYN 74
           K+LRA+LA+G  N
Sbjct: 544 KDLRARLANGLMN 556

[Close]

BLAST of Lsi02G026360 vs. TAIR 10
Match: AT1G51680.1 (4-coumarate:CoA ligase 1 )

HSP 1 Score: 100.9 bits (250), Expect = 4.4e-22
Identity = 49/70 (70.00%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 1   MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILR 60
           M +  AGEVPVAFVVK+ DS ++E++VKQF++KQVVFYKR+ +VFF  +IPKAPSGKILR
Sbjct: 491 MKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILR 550

Query: 61  KELRAKLASG 71
           K+LRAKLA+G
Sbjct: 551 KDLRAKLANG 560

[Close]

BLAST of Lsi02G026360 vs. TAIR 10
Match: AT1G65060.1 (4-coumarate:CoA ligase 3 )

HSP 1 Score: 93.2 bits (230), Expect = 9.3e-20
Identity = 46/65 (70.77%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 3   DVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILRKE 62
           D  AGEVPVAFVV++N + ITEE+VK+++ KQVVFYKRL +VFFV +IPK+PSGKILRK+
Sbjct: 496 DEVAGEVPVAFVVRSNGNDITEEDVKEYVAKQVVFYKRLHKVFFVASIPKSPSGKILRKD 555

Query: 63  LRAKL 68
           L+AKL
Sbjct: 556 LKAKL 560

[Close]

BLAST of Lsi02G026360 vs. TAIR 10
Match: AT3G21230.1 (4-coumarate:CoA ligase 5 )

HSP 1 Score: 83.2 bits (204), Expect = 9.6e-17
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 1   MPDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILR 60
           M D  A EVPVAFV ++  S +TE++VK ++ KQVV YKR+K VFF+  IPKA SGKILR
Sbjct: 498 MKDEVADEVPVAFVARSQGSQLTEDDVKSYVNKQVVHYKRIKMVFFIEVIPKAVSGKILR 557

Query: 61  KELRAKL 68
           K+LRAKL
Sbjct: 558 KDLRAKL 564

[Close]

BLAST of Lsi02G026360 vs. TAIR 10
Match: AT4G05160.1 (AMP-dependent synthetase and ligase family protein )

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-15
Identity = 38/68 (55.88%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 2   PDVEAGEVPVAFVVKANDSIITEEEVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILRK 61
           PD EAGEVP+AFVV++ +S ITE+++++FI KQV  YKRL+RV F++ +PK+ +GKILR+
Sbjct: 475 PDEEAGEVPIAFVVRSPNSSITEQDIQKFIAKQVAPYKRLRRVSFISLVPKSAAGKILRR 534

Query: 62  ELRAKLAS 70
           EL  ++ S
Sbjct: 535 ELVQQVRS 542

The following BLAST results are available for this feature:

BLAST of Lsi02G026360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24145	2.3e-23	72.60	4-coumarate--CoA ligase 1 OS=Nicotiana tabacum OX=4097 GN=4CL1 PE=2 SV=1	[more]
O24146	2.3e-23	73.97	4-coumarate--CoA ligase 2 OS=Nicotiana tabacum OX=4097 GN=4CL2 PE=1 SV=1	[more]
P31684	3.0e-23	72.60	4-coumarate--CoA ligase 1 OS=Solanum tuberosum OX=4113 GN=4CL1 PE=3 SV=1	[more]
P31685	3.0e-23	72.60	4-coumarate--CoA ligase 2 OS=Solanum tuberosum OX=4113 GN=4CL2 PE=3 SV=1	[more]
I3PB37	3.9e-23	71.23	4-coumarate:CoA ligase 1 OS=Petunia hybrida OX=4102 GN=4CL1 PE=1 SV=1	[more]

BLAST of Lsi02G026360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K658	4.2e-28	94.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430250 PE=4 SV=1	[more]
A0A5A7US61	2.1e-27	93.15	4-coumarate--CoA ligase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CE71	2.1e-27	93.15	4-coumarate--CoA ligase 1-like OS=Cucumis melo OX=3656 GN=LOC103499867 PE=4 SV=1	[more]
A0A5A7UUG4	4.6e-27	91.78	4-coumarate--CoA ligase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0K8H9	1.0e-26	90.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430240 PE=4 SV=1	[more]

BLAST of Lsi02G026360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135893.3	8.7e-28	94.52	4-coumarate--CoA ligase 2 [Cucumis sativus] >KAE8646417.1 hypothetical protein C...	[more]
XP_038897021.1	4.3e-27	91.78	4-coumarate--CoA ligase 1-like [Benincasa hispida]	[more]
KAA0058682.1	4.3e-27	93.15	4-coumarate--CoA ligase 1-like [Cucumis melo var. makuwa] >TYK10488.1 4-coumarat...	[more]
XP_008461216.1	4.3e-27	93.15	PREDICTED: 4-coumarate--CoA ligase 1-like [Cucumis melo]	[more]
KAA0058680.1	9.6e-27	91.78	4-coumarate--CoA ligase 1-like [Cucumis melo var. makuwa] >TYK10486.1 4-coumarat...	[more]

BLAST of Lsi02G026360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21240.1	6.9e-23	67.12	4-coumarate:CoA ligase 2	[more]
AT1G51680.1	4.4e-22	70.00	4-coumarate:CoA ligase 1	[more]
AT1G65060.1	9.3e-20	70.77	4-coumarate:CoA ligase 3	[more]
AT3G21230.1	9.6e-17	62.69	4-coumarate:CoA ligase 5	[more]
AT4G05160.1	1.4e-15	55.88	AMP-dependent synthetase and ligase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025110	AMP-binding enzyme, C-terminal domain	PFAM	PF13193	AMP-binding_C	coord: 2..57 e-value: 2.9E-9 score: 37.8
None	No IPR available	GENE3D	3.30.300.30		coord: 1..70 e-value: 1.5E-16 score: 62.8
None	No IPR available	PANTHER	PTHR24096	LONG-CHAIN-FATTY-ACID--COA LIGASE	coord: 1..67
None	No IPR available	PANTHER	PTHR24096:SF149	4-COUMARATE--COA LIGASE 2	coord: 1..67
None	No IPR available	SUPERFAMILY	56801	Acetyl-CoA synthetase-like	coord: 2..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G026360.1	Lsi02G026360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016405	CoA-ligase activity