Lsi02G026020 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G026020
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	30S ribosomal protein 2, chloroplastic-like
Location	chr02: 32407727 .. 32414131 (+)
RNA-Seq Expression	Lsi02G026020
Synteny	Lsi02G026020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGCCACGTGCGGGCAGCACGAGTTTAGCTAATCTCTTCTTCTTCTCGACTGGATAAACCTCTGGCCTCGCCTTTCAGGGTTCTATAGCTTCTTCTCTCTTGCTCTCGCTCTGCACACCAAAAATGGCTTCCATCTCATCCATATTATCCCCAACAAATCTCTTCCACAGCTCCACAAAACCCACTGAAATCCCACAAAATTTATCCACTCAATTTCTCCGACCAATCTCCTTTCATCCTCCTCATACCCTCCTCCGAATCTCTCCCGCTCTTCAAACCTCCACCCCCAAACGCCCCACGAGACTCTTCGCCGTCGCAGAAGCGGCGGTTACTTCCCAGGGTGCCAGTTCGGTGGCGGCAAGGAAATTGTACATTGGGAATATACCTAGAAACGTGGATAATGAGGAGCTCACTCGGATTGTCCAAGAACATGGGGCTGTGGAGAAGGCTGAGGTGAGTAATTTCTGCTTGGAATTGTTCTTGTTCTTCATTTTCCTCTTTTGGGGATCCTGAATTTTGTTTGATACCCTGCGTCGCATTGTTGATTATTGAGGGGTGATTTCTGCTTAGTTTGTCTCGAACCTTCGTATTGATTAAGTTTACATATGTACAAGACTTGCAGAATGTAGCTTGATTTTGGGCTAAATTTGTCTACCATTTACTTCCCAAATGATGTTTGCAGAATGTTATCCACCAAGGAAGATAGAAAAAATTTTAAACCCTTCTTTTGTCTTTTAGTATTGGACATGCTATTGAGGGGTTTTTAACATTTCAGGTTGGATTGGTTCTTGTCATCTATAGATTGAGCTGAATCGTTTTTCACATCTATCATACTAAAATAGGATAAGATGTACTCCAGAAATTGCTAAGATAACTCTAGATTTGAACCTCTTATATCAAAGGTACATGTCGATTATGTTAAACTAGATAACACTCTCAGAATTTTTTCTGGCAAGGCACTTGAACCAAACAGTTCCTTAAGTCAAGTATCTAGCAACGTTTTTTAATGAATTAGCTCTTGCAATCAGTTGATTTGAAGAATTCTAGCATCCCCTTGTTCTTAATCTTACTCGGTAACTATTGGTGTTGGCTTTAAGACTCTTATCTTGTACCATTTCCAGGTCATGTATGACAAATACTCTGGAAGAAGCCGTAGATTTGCCTTTGTTACCATGAAAACAGTTGATGACGCAAATGCAGCAATTGAGAAACTGAATGAGACAGTAAGTTAATAGTAATACCTACAAAATGCAACAAAAATTGGAAAAAGAAAAAAAGAGAAAAAAAGAATTGTTTCTTGCTCTTGACTAGATAGATTGATTGTCCTGACAATATCGGTTTAATGGCAGGAAGTCGGAGGACGTACTATTAAAGTCAACATAACAGAAAAACCTTTGGTTAATACAATTGACACGTCACTTCTTCAGGCAGAGGATTCCCAGTTCATTGACAGTCCCTACAAAGTATACGTAGGAAATATTTCGAGTACAGTTTCTACTGAAACACTCAAAAACTTCTTCTCCGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACCTCGAAATCAAGTGGCTACGGATTTGTTACCTTCTCTTCAGAGGAGGAAGTTGAAGCTGCCATTTCATCTTTTAACAATGCTGTAAGTAACTTTCTTCGATTCTCTATCATATGATTCATATCAAATGTCCTCGCACTGATACCGATTTATGCCCGCTCTACCTCACTTTCTGGTCCATATCACAATGTCCCTTGGTTTGAGTTTCATGCATTGGCAACATTCTTGCTCCTGTTTGGTAGACACTGTCTAGTAGAGCATTCCTTCCTTGTTTCACTTTCTGTTTCCATAAACAAGTGCATCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTAAGAACCCTAAACAAGTTCTATCATTTCAGTTAAATTACAAACATGGCCCCGTATGATTTTGAAGATAGTTATAATTTAGCCTCTATAGTTTAAAAGTTAGTATTTAGTTCCTATGGTTTAAAAGTTAGAATTTAGTCCCTATGACCTTTTTTTAAACAATCGAGACTATTTGTGAGGTTTTATCAAATCATAAAGATGAAATTCTCACTTTAAGACTCGAAGAACTAAATTTTAAAAGTACCAATTTCCAAAAACATTTATAGTATGTAAGGATATTTGTGCACAATTTGCGTTCGGTATCTGTATACTTTCTCCAAACCACAACGGCCAAATTTTGTAATTTAACTTAAAATTTCTAATCACTAACCTGTAAGGAACTTTTCTAAAACTAGATGACTGATAGTCATTGCCAACTCGTACATCTTCTGTTACTTATCGATATTACTTAACCGTTGGACGAGCTACGATCTAAAAATGATGGCATATTAACCCGAAACCTCTCACTCTTTCTTCATTTCTGAATTCTTGTGAGAAGCTTGTGTGCCTGATATGTTTTTCTTTGCTGCAGTTGTTGGAAGGCCAACCAATCCGTGTAAACAAGGCTTAAATTTTGTAGGGTTCTATGTAACAAGATGTTTCGAAGTTTCACTTTTGCCTCCTGGCATGAAATTGATGAACAGCAGAGGGCAGCTTTTTCACTCAATTTCTCTGTATTGATATCATTAATGTATAATCTTGTTTATTTTTCTGTTTAAGCATCCAGTCTAGTCTTAATTAGACTTAAAAATGCAAATCTTTGATTGCATTTCAATTATGCAGAAAATCATTTTCAAATTAA

mRNA sequence

AAAAAAGCCACGTGCGGGCAGCACGAGTTTAGCTAATCTCTTCTTCTTCTCGACTGGATAAACCTCTGGCCTCGCCTTTCAGGGTTCTATAGCTTCTTCTCTCTTGCTCTCGCTCTGCACACCAAAAATGGCTTCCATCTCATCCATATTATCCCCAACAAATCTCTTCCACAGCTCCACAAAACCCACTGAAATCCCACAAAATTTATCCACTCAATTTCTCCGACCAATCTCCTTTCATCCTCCTCATACCCTCCTCCGAATCTCTCCCGCTCTTCAAACCTCCACCCCCAAACGCCCCACGAGACTCTTCGCCGTCGCAGAAGCGGCGGTTACTTCCCAGGGTGCCAGTTCGGTGGCGGCAAGGAAATTGTACATTGGGAATATACCTAGAAACGTGGATAATGAGGAGCTCACTCGGATTGTCCAAGAACATGGGGCTGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCTGGAAGAAGCCGTAGATTTGCCTTTGTTACCATGAAAACAGTTGATGACGCAAATGCAGCAATTGAGAAACTGAATGAGACAGAAGTCGGAGGACGTACTATTAAAGTCAACATAACAGAAAAACCTTTGGTTAATACAATTGACACGTCACTTCTTCAGGCAGAGGATTCCCAGTTCATTGACAGTCCCTACAAAGTATACGTAGGAAATATTTCGAGTACAGTTTCTACTGAAACACTCAAAAACTTCTTCTCCGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACCTCGAAATCAAGTGGCTACGGATTTGTTACCTTCTCTTCAGAGGAGGAAGTTGAAGCTGCCATTTCATCTTTTAACAATGCTTTGTTGGAAGGCCAACCAATCCGTGTAAACAAGGCTTAAATTTTGTAGGGTTCTATGTAACAAGATGTTTCGAAGTTTCACTTTTGCCTCCTGGCATGAAATTGATGAACAGCAGAGGGCAGCTTTTTCACTCAATTTCTCTGTATTGATATCATTAATGTATAATCTTGTTTATTTTTCTGTTTAAGCATCCAGTCTAGTCTTAATTAGACTTAAAAATGCAAATCTTTGATTGCATTTCAATTATGCAGAAAATCATTTTCAAATTAA

Coding sequence (CDS)

ATGGCTTCCATCTCATCCATATTATCCCCAACAAATCTCTTCCACAGCTCCACAAAACCCACTGAAATCCCACAAAATTTATCCACTCAATTTCTCCGACCAATCTCCTTTCATCCTCCTCATACCCTCCTCCGAATCTCTCCCGCTCTTCAAACCTCCACCCCCAAACGCCCCACGAGACTCTTCGCCGTCGCAGAAGCGGCGGTTACTTCCCAGGGTGCCAGTTCGGTGGCGGCAAGGAAATTGTACATTGGGAATATACCTAGAAACGTGGATAATGAGGAGCTCACTCGGATTGTCCAAGAACATGGGGCTGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCTGGAAGAAGCCGTAGATTTGCCTTTGTTACCATGAAAACAGTTGATGACGCAAATGCAGCAATTGAGAAACTGAATGAGACAGAAGTCGGAGGACGTACTATTAAAGTCAACATAACAGAAAAACCTTTGGTTAATACAATTGACACGTCACTTCTTCAGGCAGAGGATTCCCAGTTCATTGACAGTCCCTACAAAGTATACGTAGGAAATATTTCGAGTACAGTTTCTACTGAAACACTCAAAAACTTCTTCTCCGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACCTCGAAATCAAGTGGCTACGGATTTGTTACCTTCTCTTCAGAGGAGGAAGTTGAAGCTGCCATTTCATCTTTTAACAATGCTTTGTTGGAAGGCCAACCAATCCGTGTAAACAAGGCTTAA

Protein sequence

MASISSILSPTNLFHSSTKPTEIPQNLSTQFLRPISFHPPHTLLRISPALQTSTPKRPTRLFAVAEAAVTSQGASSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDTSLLQAEDSQFIDSPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA

Homology

[Close]

BLAST of Lsi02G026020 vs. ExPASy Swiss-Prot
Match: P82277 (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.5e-72
Identity = 154/261 (59.00%), Postives = 191/261 (73.18%), Query Frame = 0


Query: 1   MASISSILSPTNLF-HSSTKPTEIPQNLSTQFLRPISFHPPHTLLRISPALQTSTPKRPT 60
           MA+ISSIL    L  H S+  +      S+Q L  +        L++   + T+ P    
Sbjct: 1   MATISSILPCHGLLQHCSSSSSSSKPKFSSQNLVQLQSFSNGFGLKLKTRVSTNPPLLKV 60

Query: 61  RLFAVAEAAVTSQGASS---VAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKY 120
           R     E + +S  +SS     AR+LY+GNIPRN++N+EL  IV+EHGA+E AEVMYDKY
Sbjct: 61  RAVVTEETSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKY 120

Query: 121 SGRSRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDTSLLQAEDSQF 180
           SGRSRRF FVTMKTV+DANA IEKLN+TE+GGR IKVNITEKPL   +D +  QAEDSQF
Sbjct: 121 SGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPL-EGMDIATTQAEDSQF 180

Query: 181 IDSPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVE 240
           ++SPYKVY+GN++ TV+ E LK+FFSEKGKVL AKV R PGTSKS+G+GFV+FSSEEEVE
Sbjct: 181 VESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVE 240

Query: 241 AAISSFNNALLEGQPIRVNKA 258
           AAI + NN++LEGQ IRVNKA
Sbjct: 241 AAIQALNNSVLEGQKIRVNKA 260

[Close]

BLAST of Lsi02G026020 vs. ExPASy Swiss-Prot
Match: Q8VYM4 (30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 PE=2 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 3.0e-70
Identity = 140/213 (65.73%), Postives = 168/213 (78.87%), Query Frame = 0


Query: 45  RISPALQTSTPKRPTRLFAVAEAAVTSQGASSVAARKLYIGNIPRNVDNEELTRIVQEHG 104
           R  P   T T ++P  L             SS AAR++YIGNIPR V NE+LT++V+EHG
Sbjct: 52  RFIPYAVTETEEKPAAL-----------DPSSEAARRVYIGNIPRTVTNEQLTKLVEEHG 111

Query: 105 AVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTI 164
           AVEK +VMYDKYSGRSRRF F TMK+V+DANA +EKLN   V GR IKVNITEKP+ ++ 
Sbjct: 112 AVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSP 171

Query: 165 DTSLLQAEDSQFIDSPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGY 224
           D S+LQ+EDS F+DSPYKVYVGN++ TV+ E L+N FSEKGKV+SAKVSRVPGTSKS+G+
Sbjct: 172 DLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGF 231

Query: 225 GFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 258
           GFVTFSSEE+VEAAI + NN+LLEGQ IRVNKA
Sbjct: 232 GFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253

[Close]

BLAST of Lsi02G026020 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.1e-31
Identity = 71/196 (36.22%), Postives = 123/196 (62.76%), Query Frame = 0


Query: 64  VAEAAVTSQGASSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRF 123
           V E   T+Q +      +LY+GN+P  + + EL++I  E G V   +++YDK + RSR F
Sbjct: 102 VEEEKQTTQASGEEG--RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGF 161

Query: 124 AFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPL--VNTIDTSLLQAEDSQFIDSPY 183
            FVTM ++++A  A++  N +++GGRT+KVN  E P    N +  + ++  +  ++DSP+
Sbjct: 162 GFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPH 221

Query: 184 KVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISS 243
           KVY GN+   ++++ LK+ F ++  VL AKV     T +S G+GF++F S E V++A+++
Sbjct: 222 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 281

Query: 244 FNNALLEGQPIRVNKA 258
            N   +EG+ +R+N A
Sbjct: 282 MNGVEVEGRALRLNLA 295

[Close]

BLAST of Lsi02G026020 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.1e-31
Identity = 71/186 (38.17%), Postives = 122/186 (65.59%), Query Frame = 0


Query: 74  ASSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDD 133
           + SV   +LY+GN+P ++ + +L+ I  E G V   E++YD+ + RSR FAFVTM +V++
Sbjct: 108 SESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEE 167

Query: 134 ANAAIEKLNETEVGGRTIKVNITEKPL--VNTIDTSLLQAEDSQFIDSPYKVYVGNISST 193
           A  AI   + ++VGGRT+KVN  E P      + ++ +++    F+DSP+K+YV N+S  
Sbjct: 168 AKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWA 227

Query: 194 VSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQP 253
           ++++ L++ F+++   +SAKV     + +S G+GF+TFSS E + +A+ + N   LEG+P
Sbjct: 228 LTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRP 287

Query: 254 IRVNKA 258
           +R+N A
Sbjct: 288 LRLNVA 293

[Close]

BLAST of Lsi02G026020 vs. ExPASy Swiss-Prot
Match: Q08937 (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-27
Identity = 77/196 (39.29%), Postives = 108/196 (55.10%), Query Frame = 0


Query: 81  KLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEK 140
           KL++GN+P +VD+  L  + +  G VE  EV+YDK +GRSR F FVTM T ++  AA ++
Sbjct: 88  KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147

Query: 141 LNETEVGGRTIKVNITEKPLVNTI-------------------DTSLLQAEDSQFIDSPY 200
            N  E+ GR I+VN    P                        ++S   A   + +DS  
Sbjct: 148 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSN 207

Query: 201 KVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISS 258
           +VYVGN+S  V    LK  FSE+G V+ AKV     + +S G+GFVT+SS +EV  AI S
Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267

[Close]

BLAST of Lsi02G026020 vs. ExPASy TrEMBL
Match: A0A6J1JXN0 (30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488418 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.7e-120
Identity = 234/257 (91.05%), Postives = 243/257 (94.55%), Query Frame = 0


Query: 1   MASISSILSPTNLFHSSTKPTEIPQNLSTQFLRPISFHPPHTLLRISPALQTSTPKRPTR 60
           MASISSIL+P NL HSS KPTEIPQNLSTQFLRPISFHP +TLLR+SP LQTS  KR TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTSQGASSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ Q  SSVAARKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDTSLLQAEDSQFIDSP 180
           RRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNT+D SLLQA++SQFIDSP
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 257

[Close]

BLAST of Lsi02G026020 vs. ExPASy TrEMBL
Match: A0A6J1GSN8 (30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 2.8e-119
Identity = 233/257 (90.66%), Postives = 242/257 (94.16%), Query Frame = 0


Query: 1   MASISSILSPTNLFHSSTKPTEIPQNLSTQFLRPISFHPPHTLLRISPALQTSTPKRPTR 60
           MASISSIL+P NL HSS KPTEIPQ LSTQFLRPISFHP +TLLR+SP LQTS  KR TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTSQGASSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ Q  SSVAARKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDTSLLQAEDSQFIDSP 180
           RRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNT+D SLLQA++SQFIDSP
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 257

[Close]

BLAST of Lsi02G026020 vs. ExPASy TrEMBL
Match: A0A6J1GQT6 (30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 2.8e-119
Identity = 233/257 (90.66%), Postives = 242/257 (94.16%), Query Frame = 0


Query: 1   MASISSILSPTNLFHSSTKPTEIPQNLSTQFLRPISFHPPHTLLRISPALQTSTPKRPTR 60
           MASISSIL+P NL HSS KPTEIPQ LSTQFLRPISFHP +TLLR+SP LQTS  KR TR
Sbjct: 23  MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 82

Query: 61  LFAVAEAAVTSQGASSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ Q  SSVAARKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 83  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 142

Query: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDTSLLQAEDSQFIDSP 180
           RRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNT+D SLLQA++SQFIDSP
Sbjct: 143 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 202

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 203 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 262

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 263 SFNNALLEGQPIRVNKA 279

[Close]

BLAST of Lsi02G026020 vs. ExPASy TrEMBL
Match: A0A5A7UYL6 (30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001110 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 2.7e-114
Identity = 228/257 (88.72%), Postives = 239/257 (93.00%), Query Frame = 0


Query: 1   MASISSILSPTNLFHSSTKPTEIPQNLSTQFLRPISFHPPHTLLRISPALQTSTPKRPTR 60
           MASISSIL+PTNL H+S KPTEI Q LS+QFLRPISFHPPH LLRISP       + PTR
Sbjct: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPV----AARPPTR 60

Query: 61  LFAVAEAAVTSQGASSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA  +QGASSVA RKLYIGNIPRNV+NEELTRIVQEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAA--TQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDTSLLQAEDSQFIDSP 180
           RRFAFVTMKTV+DANAAIEKLNETEVGGR IKVNITEKP+VNT+D S+LQAE+SQFIDSP
Sbjct: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 251

[Close]

BLAST of Lsi02G026020 vs. ExPASy TrEMBL
Match: A0A1S3CEQ4 (30S ribosomal protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499898 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 2.7e-114
Identity = 228/257 (88.72%), Postives = 239/257 (93.00%), Query Frame = 0


Query: 1   MASISSILSPTNLFHSSTKPTEIPQNLSTQFLRPISFHPPHTLLRISPALQTSTPKRPTR 60
           MASISSIL+PTNL H+S KPTEI Q LS+QFLRPISFHPPH LLRISP       + PTR
Sbjct: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPV----AARPPTR 60

Query: 61  LFAVAEAAVTSQGASSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA  +QGASSVA RKLYIGNIPRNV+NEELTRIVQEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAA--TQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDTSLLQAEDSQFIDSP 180
           RRFAFVTMKTV+DANAAIEKLNETEVGGR IKVNITEKP+VNT+D S+LQAE+SQFIDSP
Sbjct: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 251

[Close]

BLAST of Lsi02G026020 vs. NCBI nr
Match: XP_022991923.1 (30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 440.3 bits (1131), Expect = 1.2e-119
Identity = 234/257 (91.05%), Postives = 243/257 (94.55%), Query Frame = 0


Query: 1   MASISSILSPTNLFHSSTKPTEIPQNLSTQFLRPISFHPPHTLLRISPALQTSTPKRPTR 60
           MASISSIL+P NL HSS KPTEIPQNLSTQFLRPISFHP +TLLR+SP LQTS  KR TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTSQGASSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ Q  SSVAARKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDTSLLQAEDSQFIDSP 180
           RRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNT+D SLLQA++SQFIDSP
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 257

[Close]

BLAST of Lsi02G026020 vs. NCBI nr
Match: KAG6575671.1 (30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014222.1 30S ribosomal protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 438.7 bits (1127), Expect = 3.4e-119
Identity = 233/257 (90.66%), Postives = 242/257 (94.16%), Query Frame = 0


Query: 1   MASISSILSPTNLFHSSTKPTEIPQNLSTQFLRPISFHPPHTLLRISPALQTSTPKRPTR 60
           MASISSIL+P NL HSS KPTEIPQNLSTQFLRPISFHP +TLLR+SP LQTS  KR TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTSQGASSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAE AV+ Q  SSVAARKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEVAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDTSLLQAEDSQFIDSP 180
           RRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNT+D SLLQA++SQFIDSP
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 257

[Close]

BLAST of Lsi02G026020 vs. NCBI nr
Match: XP_022954329.1 (30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 438.0 bits (1125), Expect = 5.8e-119
Identity = 233/257 (90.66%), Postives = 242/257 (94.16%), Query Frame = 0


Query: 1   MASISSILSPTNLFHSSTKPTEIPQNLSTQFLRPISFHPPHTLLRISPALQTSTPKRPTR 60
           MASISSIL+P NL HSS KPTEIPQ LSTQFLRPISFHP +TLLR+SP LQTS  KR TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTSQGASSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ Q  SSVAARKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDTSLLQAEDSQFIDSP 180
           RRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNT+D SLLQA++SQFIDSP
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 257

[Close]

BLAST of Lsi02G026020 vs. NCBI nr
Match: XP_022954328.1 (30S ribosomal protein 2, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 438.0 bits (1125), Expect = 5.8e-119
Identity = 233/257 (90.66%), Postives = 242/257 (94.16%), Query Frame = 0


Query: 1   MASISSILSPTNLFHSSTKPTEIPQNLSTQFLRPISFHPPHTLLRISPALQTSTPKRPTR 60
           MASISSIL+P NL HSS KPTEIPQ LSTQFLRPISFHP +TLLR+SP LQTS  KR TR
Sbjct: 23  MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 82

Query: 61  LFAVAEAAVTSQGASSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ Q  SSVAARKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 83  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 142

Query: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDTSLLQAEDSQFIDSP 180
           RRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNT+D SLLQA++SQFIDSP
Sbjct: 143 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 202

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 203 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 262

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 263 SFNNALLEGQPIRVNKA 279

[Close]

BLAST of Lsi02G026020 vs. NCBI nr
Match: XP_023548333.1 (30S ribosomal protein 2, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 435.6 bits (1119), Expect = 2.9e-118
Identity = 232/257 (90.27%), Postives = 242/257 (94.16%), Query Frame = 0


Query: 1   MASISSILSPTNLFHSSTKPTEIPQNLSTQFLRPISFHPPHTLLRISPALQTSTPKRPTR 60
           MASISSIL+P NL  SS KPTEIPQNLSTQFLRPISFHP +TLLR+SP LQTS  KR TR
Sbjct: 1   MASISSILTPANLIQSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTR 60

Query: 61  LFAVAEAAVTSQGASSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ Q  SSVAARKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDTSLLQAEDSQFIDSP 180
           RRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNT+D SLLQA++SQFIDSP
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVST+TLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 257

[Close]

BLAST of Lsi02G026020 vs. TAIR 10
Match: AT3G52150.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 266.5 bits (680), Expect = 2.2e-71
Identity = 140/213 (65.73%), Postives = 168/213 (78.87%), Query Frame = 0


Query: 45  RISPALQTSTPKRPTRLFAVAEAAVTSQGASSVAARKLYIGNIPRNVDNEELTRIVQEHG 104
           R  P   T T ++P  L             SS AAR++YIGNIPR V NE+LT++V+EHG
Sbjct: 52  RFIPYAVTETEEKPAAL-----------DPSSEAARRVYIGNIPRTVTNEQLTKLVEEHG 111

Query: 105 AVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTI 164
           AVEK +VMYDKYSGRSRRF F TMK+V+DANA +EKLN   V GR IKVNITEKP+ ++ 
Sbjct: 112 AVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSP 171

Query: 165 DTSLLQAEDSQFIDSPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGY 224
           D S+LQ+EDS F+DSPYKVYVGN++ TV+ E L+N FSEKGKV+SAKVSRVPGTSKS+G+
Sbjct: 172 DLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGF 231

Query: 225 GFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 258
           GFVTFSSEE+VEAAI + NN+LLEGQ IRVNKA
Sbjct: 232 GFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253

[Close]

BLAST of Lsi02G026020 vs. TAIR 10
Match: AT3G52150.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 266.5 bits (680), Expect = 2.2e-71
Identity = 140/213 (65.73%), Postives = 168/213 (78.87%), Query Frame = 0


Query: 45  RISPALQTSTPKRPTRLFAVAEAAVTSQGASSVAARKLYIGNIPRNVDNEELTRIVQEHG 104
           R  P   T T ++P  L             SS AAR++YIGNIPR V NE+LT++V+EHG
Sbjct: 52  RFIPYAVTETEEKPAAL-----------DPSSEAARRVYIGNIPRTVTNEQLTKLVEEHG 111

Query: 105 AVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTI 164
           AVEK +VMYDKYSGRSRRF F TMK+V+DANA +EKLN   V GR IKVNITEKP+ ++ 
Sbjct: 112 AVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSP 171

Query: 165 DTSLLQAEDSQFIDSPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGY 224
           D S+LQ+EDS F+DSPYKVYVGN++ TV+ E L+N FSEKGKV+SAKVSRVPGTSKS+G+
Sbjct: 172 DLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGF 231

Query: 225 GFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 258
           GFVTFSSEE+VEAAI + NN+LLEGQ IRVNKA
Sbjct: 232 GFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253

[Close]

BLAST of Lsi02G026020 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 137.5 bits (345), Expect = 1.5e-32
Identity = 71/196 (36.22%), Postives = 123/196 (62.76%), Query Frame = 0


Query: 64  VAEAAVTSQGASSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRF 123
           V E   T+Q +      +LY+GN+P  + + EL++I  E G V   +++YDK + RSR F
Sbjct: 102 VEEEKQTTQASGEEG--RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGF 161

Query: 124 AFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPL--VNTIDTSLLQAEDSQFIDSPY 183
            FVTM ++++A  A++  N +++GGRT+KVN  E P    N +  + ++  +  ++DSP+
Sbjct: 162 GFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPH 221

Query: 184 KVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISS 243
           KVY GN+   ++++ LK+ F ++  VL AKV     T +S G+GF++F S E V++A+++
Sbjct: 222 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 281

Query: 244 FNNALLEGQPIRVNKA 258
            N   +EG+ +R+N A
Sbjct: 282 MNGVEVEGRALRLNLA 295

[Close]

BLAST of Lsi02G026020 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 133.7 bits (335), Expect = 2.2e-31
Identity = 89/236 (37.71%), Postives = 129/236 (54.66%), Query Frame = 0


Query: 28  STQFLRPISFHPPHTLLRISPALQTSTPKRPTRLFAVAEAAVTSQGASSV------AARK 87
           S Q L   +F  P  LL  S +           +    E      GAS+V         K
Sbjct: 27  SNQTLLRFNFSTPKPLLISSRSCSRRFRVLSETITVKLEEEEKDDGASAVLDPPAAVNTK 86

Query: 88  LYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEKL 147
           LY GN+P NVD+  L +I+Q+    E  EV+Y++ +G+SR FAFVTM  V+D N  I+ L
Sbjct: 87  LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146

Query: 148 NETEVGGRTIKVNITEKPLVNTIDTSLLQAEDSQFIDSPYKVYVGNISSTVSTETLKNFF 207
           + TE  GR +KVN  +KP  N         ++  + ++ +K++VGN+S TV++E+L   F
Sbjct: 147 DGTEYLGRALKVNFADKPKPN---------KEPLYPETEHKLFVGNLSWTVTSESLAGAF 206

Query: 208 SEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 258
            E G V+ A+V     T +S GYGFV +SS+ E+E A+ S +   LEG+ IRVN A
Sbjct: 207 RECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253

[Close]

BLAST of Lsi02G026020 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 122.9 bits (307), Expect = 3.8e-28
Identity = 68/177 (38.42%), Postives = 105/177 (59.32%), Query Frame = 0


Query: 81  KLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEK 140
           KL++GN+P +VD++ L  + ++ G VE +EV+Y++ + +SR F FVTM TV++A  A+EK
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173

Query: 141 LNETEVGGRTIKVNITEKPLVNTIDTSLLQAEDSQFIDSPYKVYVGNISSTVSTETLKNF 200
            N  EV GR + VN                    +  D+ +++YVGN+   V +  L+  
Sbjct: 174 FNSFEVNGRRLTVN-------RAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERL 233

Query: 201 FSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 258
           FSE GKV+ A+V     T +S G+GFV  S+E EV  AI++ +   LEG+ I+VN A
Sbjct: 234 FSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283

The following BLAST results are available for this feature:

BLAST of Lsi02G026020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82277	1.5e-72	59.00	30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=...	[more]
Q8VYM4	3.0e-70	65.73	30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 ...	[more]
Q39061	2.1e-31	36.22	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19684	2.1e-31	38.17	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q08937	1.1e-27	39.29	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]

BLAST of Lsi02G026020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JXN0	5.7e-120	91.05	30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GSN8	2.8e-119	90.66	30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=...	[more]
A0A6J1GQT6	2.8e-119	90.66	30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A5A7UYL6	2.7e-114	88.72	30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CEQ4	2.7e-114	88.72	30S ribosomal protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499898 P...	[more]

BLAST of Lsi02G026020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991923.1	1.2e-119	91.05	30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima]	[more]
KAG6575671.1	3.4e-119	90.66	30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022954329.1	5.8e-119	90.66	30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata]	[more]
XP_022954328.1	5.8e-119	90.66	30S ribosomal protein 2, chloroplastic-like isoform X1 [Cucurbita moschata]	[more]
XP_023548333.1	2.9e-118	90.27	30S ribosomal protein 2, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi02G026020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52150.1	2.2e-71	65.73	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52150.2	2.2e-71	65.73	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	1.5e-32	36.22	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	2.2e-31	37.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G50250.1	3.8e-28	38.42	chloroplast RNA-binding protein 31B	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 182..255 e-value: 0.18 score: 20.9 coord: 81..154 e-value: 1.9 score: 11.2
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 81..154 e-value: 3.7E-26 score: 102.9 coord: 182..255 e-value: 2.5E-23 score: 93.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 82..152 e-value: 1.8E-19 score: 69.3 coord: 183..253 e-value: 1.9E-17 score: 62.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 181..257 score: 18.32506
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 80..158 score: 18.410337
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 51..160 e-value: 2.7E-26 score: 94.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 165..257 e-value: 4.1E-24 score: 87.0
None	No IPR available	PANTHER	PTHR48025:SF4	30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC	coord: 1..257
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..257
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 81..158 e-value: 3.30267E-34 score: 116.559
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 74..158
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 175..257

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G026020.1	Lsi02G026020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding