Lsi02G025850 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G025850
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	arabinogalactan peptide 23-like
Location	chr02: 32308331 .. 32308522 (+)
RNA-Seq Expression	Lsi02G025850
Synteny	Lsi02G025850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGAAGAAGATCGCTTGCGCCGCCCTCTTCGCCGCCGCCACCGTCAGTGCCGTCGTGGCTGCCGATGAGTCTCTCTCTCCCGCCGCTGCACCGGGGCCGAGCAGCGCCGCCTCCGCCGCTCTCCCCGCCCTCGGATCCCTCGTCGGTGCCTCACTTGTTTCCTTCGTCGCCTACTTCTTGAACTGA

mRNA sequence

ATGGAAATGAAGAAGATCGCTTGCGCCGCCCTCTTCGCCGCCGCCACCGTCAGTGCCGTCGTGGCTGCCGATGAGTCTCTCTCTCCCGCCGCTGCACCGGGGCCGAGCAGCGCCGCCTCCGCCGCTCTCCCCGCCCTCGGATCCCTCGTCGGTGCCTCACTTGTTTCCTTCGTCGCCTACTTCTTGAACTGA

Coding sequence (CDS)

ATGGAAATGAAGAAGATCGCTTGCGCCGCCCTCTTCGCCGCCGCCACCGTCAGTGCCGTCGTGGCTGCCGATGAGTCTCTCTCTCCCGCCGCTGCACCGGGGCCGAGCAGCGCCGCCTCCGCCGCTCTCCCCGCCCTCGGATCCCTCGTCGGTGCCTCACTTGTTTCCTTCGTCGCCTACTTCTTGAACTGA

Protein sequence

MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN

Homology

[Close]

BLAST of Lsi02G025850 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 6.0e-12
Identity = 45/63 (71.43%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKKIAC  LFAAA+++AV+AA+E  +P  APGP+SAASAALPALGSLVGASLVS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 FLN 64
          +L+
Sbjct: 61 YLH 61

[Close]

BLAST of Lsi02G025850 vs. ExPASy TrEMBL
Match: A0A6J1KX42 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.9e-18
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKKIACAALFAAATV+AVVA+DESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

[Close]

BLAST of Lsi02G025850 vs. ExPASy TrEMBL
Match: A0A6J1H8I1 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.4e-17
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKKIACAALFAAAT++AVVA+DESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA+
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

[Close]

BLAST of Lsi02G025850 vs. ExPASy TrEMBL
Match: A0A6J1F3F5 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.4e-16
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKKIACAALFAAATV+AVVA+DESLSPAAAPGPSSAASA LPALGSLVGASLVS VAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSLVAY 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

[Close]

BLAST of Lsi02G025850 vs. ExPASy TrEMBL
Match: A0A6J1IYE9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-14
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMK IAC ALF AA V+AVVA+DES SPAAAPGPSSAASAALPALGSL+GASLVSFVAY
Sbjct: 1  MEMKNIACTALFTAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 FLN 64
           LN
Sbjct: 61 VLN 63

[Close]

BLAST of Lsi02G025850 vs. ExPASy TrEMBL
Match: A0A1S3CDX5 (arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.8e-12
Identity = 54/64 (84.38%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFV-A 60
          MEMKKIACAALFAAA VSA VAADES+SPAAAPGPSSAASAALP L    GAS+VSFV A
Sbjct: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVL----GASVVSFVAA 60

Query: 61 YFLN 64
          YFLN
Sbjct: 61 YFLN 60

[Close]

BLAST of Lsi02G025850 vs. NCBI nr
Match: XP_023004714.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 98.6 bits (244), Expect = 2.0e-17
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKKIACAALFAAATV+AVVA+DESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

[Close]

BLAST of Lsi02G025850 vs. NCBI nr
Match: XP_038899473.1 (arabinogalactan protein 23-like [Benincasa hispida])

HSP 1 Score: 97.8 bits (242), Expect = 3.5e-17
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKKIACAALFAAA VS+ VAADESLSPAAAPGPSSAASAALPALGSLVGASLV+FVAY
Sbjct: 1  MEMKKIACAALFAAAAVSSAVAADESLSPAAAPGPSSAASAALPALGSLVGASLVTFVAY 60

Query: 61 FLN 64
          FLN
Sbjct: 61 FLN 63

[Close]

BLAST of Lsi02G025850 vs. NCBI nr
Match: KAG7025661.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.1 bits (240), Expect = 5.9e-17
Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKKIACAALFAAATV+AVVA+DESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA+
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

[Close]

BLAST of Lsi02G025850 vs. NCBI nr
Match: XP_022960230.1 (arabinogalactan peptide 23-like [Cucurbita moschata])

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKKIACAALFAAAT++AVVA+DESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA+
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

[Close]

BLAST of Lsi02G025850 vs. NCBI nr
Match: XP_022933008.1 (arabinogalactan peptide 23-like [Cucurbita moschata] >KAG7025100.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.7 bits (234), Expect = 3.0e-16
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKKIACAALFAAATV+AVVA+DESLSPAAAPGPSSAASA LPALGSLVGASLVS VAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSLVAY 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

[Close]

BLAST of Lsi02G025850 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 70.9 bits (172), Expect = 4.3e-13
Identity = 45/63 (71.43%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKKIAC  LFAAA+++AV+AA+E  +P  APGP+SAASAALPALGSLVGASLVS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 FLN 64
          +L+
Sbjct: 61 YLH 61

[Close]

BLAST of Lsi02G025850 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 60.5 bits (145), Expect = 5.7e-10
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGP-SSAASAALPALGSLVGASLVSFVA 60
          MEMKKIAC  +FAAA+++AV+AA+     A APGP +S AS A+PALGSLVGASLVS  A
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAAEVG---APAPGPAASGASVAVPALGSLVGASLVSLFA 60

Query: 61 YFLN 64
          Y+LN
Sbjct: 61 YYLN 61

The following BLAST results are available for this feature:

BLAST of Lsi02G025850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	6.0e-12	71.43	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of Lsi02G025850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KX42	9.9e-18	93.65	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4...	[more]
A0A6J1H8I1	6.4e-17	90.48	arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE...	[more]
A0A6J1F3F5	1.4e-16	90.48	arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE...	[more]
A0A6J1IYE9	1.0e-14	85.71	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4...	[more]
A0A1S3CDX5	4.8e-12	84.38	arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=...	[more]

BLAST of Lsi02G025850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023004714.1	2.0e-17	93.65	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]
XP_038899473.1	3.5e-17	93.65	arabinogalactan protein 23-like [Benincasa hispida]	[more]
KAG7025661.1	5.9e-17	92.06	Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022960230.1	1.3e-16	90.48	arabinogalactan peptide 23-like [Cucurbita moschata]	[more]
XP_022933008.1	3.0e-16	90.48	arabinogalactan peptide 23-like [Cucurbita moschata] >KAG7025100.1 Arabinogalact...	[more]

BLAST of Lsi02G025850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	4.3e-13	71.43	arabinogalactan protein 23	[more]
AT2G41905.1	5.7e-10	65.63	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34672:SF2	ARABINOGALACTAN PROTEIN 23	coord: 1..62
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G025850.1	Lsi02G025850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane