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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCGATTTCCGGCACTTCCAAGATCTTCGCCGTGGTTGTCCTCGCCGTCGTGGCGATCTTCTCGGCCGTCGCTTCCGCTCAGGAAGCTCCAGCGCCAGCGCCGGAGCTCGACCGAGGAGCAGCGTCGTCTCTGCCTGCTGCGGCCTCCATGGCTCTGCTCTGTGCTTCCTTCTTCCTCTCTCTTCCTGCACTTTTGAAGGCCTAA mRNA sequence ATGGCGATTTCCGGCACTTCCAAGATCTTCGCCGTGGTTGTCCTCGCCGTCGTGGCGATCTTCTCGGCCGTCGCTTCCGCTCAGGAAGCTCCAGCGCCAGCGCCGGAGCTCGACCGAGGAGCAGCGTCGTCTCTGCCTGCTGCGGCCTCCATGGCTCTGCTCTGTGCTTCCTTCTTCCTCTCTCTTCCTGCACTTTTGAAGGCCTAA Coding sequence (CDS) ATGGCGATTTCCGGCACTTCCAAGATCTTCGCCGTGGTTGTCCTCGCCGTCGTGGCGATCTTCTCGGCCGTCGCTTCCGCTCAGGAAGCTCCAGCGCCAGCGCCGGAGCTCGACCGAGGAGCAGCGTCGTCTCTGCCTGCTGCGGCCTCCATGGCTCTGCTCTGTGCTTCCTTCTTCCTCTCTCTTCCTGCACTTTTGAAGGCCTAA Protein sequence MAISGTSKIFAVVVLAVVAIFSAVASAQEAPAPAPELDRGAASSLPAAASMALLCASFFLSLPALLKA
Homology
BLAST of Lsi02G025840 vs. ExPASy TrEMBL
Match: A0A0A0K9T6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428790 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 2.5e-11 Identity = 49/61 (80.33%), Postives = 52/61 (85.25%), Query Frame = 0
Query: 7 SKIFAVVVLAVVAIFSAVASAQEAPAPAPELDRGAASSLPAAASMALLCASFFLSLPALL 66
SKI VV LA+VA+FSA+ SAQEAPAPAP LDRGAASSLP A SMALL ASFF SLPALL
Sbjct: 4 SKISPVVFLALVALFSALVSAQEAPAPAPGLDRGAASSLPVATSMALLFASFFFSLPALL 63
Query: 67 K 68
K
Sbjct: 64 K 64
BLAST of Lsi02G025840 vs. NCBI nr
Match: KAG6595145.1 (hypothetical protein SDJN03_11698, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 82.0 bits (201), Expect = 2.1e-12 Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 0
Query: 1 MAISGTSKIFAVVVLAVVAIFSAVASAQEA----PAPAPELDRGAASSLPAAASMALLCA 60
MAISGTS +F VVV A+VA+FSAVASAQE+ PAPAP LDRGAA +LPAAASMALL A
Sbjct: 1 MAISGTSTVFYVVVFAIVAVFSAVASAQESPVPTPAPAPVLDRGAA-ALPAAASMALLFA 60
Query: 61 SFFLSLPALLK 68
SFFLSLPALLK
Sbjct: 61 SFFLSLPALLK 70
BLAST of Lsi02G025840 vs. NCBI nr
Match: KGN45142.1 (hypothetical protein Csa_015584 [Cucumis sativus]) HSP 1 Score: 77.4 bits (189), Expect = 5.3e-11 Identity = 49/61 (80.33%), Postives = 52/61 (85.25%), Query Frame = 0
Query: 7 SKIFAVVVLAVVAIFSAVASAQEAPAPAPELDRGAASSLPAAASMALLCASFFLSLPALL 66
SKI VV LA+VA+FSA+ SAQEAPAPAP LDRGAASSLP A SMALL ASFF SLPALL
Sbjct: 4 SKISPVVFLALVALFSALVSAQEAPAPAPGLDRGAASSLPVATSMALLFASFFFSLPALL 63
Query: 67 K 68
K
Sbjct: 64 K 64
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0K9T6 | 2.5e-11 | 80.33 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428790 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAG6595145.1 | 2.1e-12 | 78.87 | hypothetical protein SDJN03_11698, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KGN45142.1 | 5.3e-11 | 80.33 | hypothetical protein Csa_015584 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
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