Lsi02G025820 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G025820
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	thylakoid lumenal 19 kDa protein, chloroplastic
Location	chr02: 32289071 .. 32289901 (-)
RNA-Seq Expression	Lsi02G025820
Synteny	Lsi02G025820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACAGCAATCACACTATTGGCGTTCTTCTCCGCCGCCGCCGCATCCACCGGGACAACCGCCCCAAGACCACCACAAGCTCCGCCGCTACTAAAGCCCCAAATTCCCATCCTCCAATCTAAACCTCCACTTTCAACATCAACCGCCCCAGTCTCCATCGCAGCCACCGCCATCGCCGTAGCCGCGATCCTTAGCACCACTCCACCGTCCCTCGCCGACACCGGCGCCGCTTTCAACGTCTACTACGGCACTGCCGCTAGCGCAGCCAATTACGGCGGCCTTGGCGGCAACGCCAGCAAGAAAGACACAGCGGAATACATCTACGACGTGCCGGAAGGCTGGAAAGAGCGATTAGTATCCAAGGTCGAAAAAGGTACTCGAAATTCGCAATCAAAAAGCTCTATTAGTTCAATTCGTTTTGAAAATCAATTTTACATTCTTAATTCCACAGGTACGAACGGAACCGACAGCGAATTTTACAATCCGAAGAAACGAACAGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTGGGGCCGAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCAAGCGCGGAGAGCTTCTTGGCGGAGGAGAAGAAGGATGAGAATGGACAAATTTATTATGTGTATGAGATCGACGGCGCCGGAACTCACAGTTTGATATCGGTGACTTGTGCAAAGAACAAGCTGTATGCGCATTTTGTGAATGCGCCGACGCCGGAGTGGAATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACGATCGGATCGTATTAG

mRNA sequence

ATGGCCACAGCAATCACACTATTGGCGTTCTTCTCCGCCGCCGCCGCATCCACCGGGACAACCGCCCCAAGACCACCACAAGCTCCGCCGCTACTAAAGCCCCAAATTCCCATCCTCCAATCTAAACCTCCACTTTCAACATCAACCGCCCCAGTCTCCATCGCAGCCACCGCCATCGCCGTAGCCGCGATCCTTAGCACCACTCCACCGTCCCTCGCCGACACCGGCGCCGCTTTCAACGTCTACTACGGCACTGCCGCTAGCGCAGCCAATTACGGCGGCCTTGGCGGCAACGCCAGCAAGAAAGACACAGCGGAATACATCTACGACGTGCCGGAAGGCTGGAAAGAGCGATTAGTATCCAAGGTCGAAAAAGGTACGAACGGAACCGACAGCGAATTTTACAATCCGAAGAAACGAACAGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTGGGGCCGAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCAAGCGCGGAGAGCTTCTTGGCGGAGGAGAAGAAGGATGAGAATGGACAAATTTATTATGTGTATGAGATCGACGGCGCCGGAACTCACAGTTTGATATCGGTGACTTGTGCAAAGAACAAGCTGTATGCGCATTTTGTGAATGCGCCGACGCCGGAGTGGAATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACGATCGGATCGTATTAG

Coding sequence (CDS)

ATGGCCACAGCAATCACACTATTGGCGTTCTTCTCCGCCGCCGCCGCATCCACCGGGACAACCGCCCCAAGACCACCACAAGCTCCGCCGCTACTAAAGCCCCAAATTCCCATCCTCCAATCTAAACCTCCACTTTCAACATCAACCGCCCCAGTCTCCATCGCAGCCACCGCCATCGCCGTAGCCGCGATCCTTAGCACCACTCCACCGTCCCTCGCCGACACCGGCGCCGCTTTCAACGTCTACTACGGCACTGCCGCTAGCGCAGCCAATTACGGCGGCCTTGGCGGCAACGCCAGCAAGAAAGACACAGCGGAATACATCTACGACGTGCCGGAAGGCTGGAAAGAGCGATTAGTATCCAAGGTCGAAAAAGGTACGAACGGAACCGACAGCGAATTTTACAATCCGAAGAAACGAACAGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTGGGGCCGAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCAAGCGCGGAGAGCTTCTTGGCGGAGGAGAAGAAGGATGAGAATGGACAAATTTATTATGTGTATGAGATCGACGGCGCCGGAACTCACAGTTTGATATCGGTGACTTGTGCAAAGAACAAGCTGTATGCGCATTTTGTGAATGCGCCGACGCCGGAGTGGAATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACGATCGGATCGTATTAG

Protein sequence

MATAITLLAFFSAAAASTGTTAPRPPQAPPLLKPQIPILQSKPPLSTSTAPVSIAATAIAVAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY

Homology

[Close]

BLAST of Lsi02G025820 vs. ExPASy Swiss-Prot
Match: P82658 (Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g63540 PE=1 SV=2)

HSP 1 Score: 285.8 bits (730), Expect = 4.7e-76
Identity = 144/224 (64.29%), Postives = 175/224 (78.12%), Query Frame = 0


Query: 28  APPLLKPQIPILQSKPPLSTSTAPVSIAATAIAVAAILSTTP--PSLADTGAAFNVYYGT 87
           +P +   + PI+   P    S    S+AA A+A  ++L+  P  P+  +    + +YYGT
Sbjct: 9   SPVISATRTPIV---PKAIASRLGTSLAA-ALAATSVLTMVPVLPAAGEGNQTYKIYYGT 68

Query: 88  AASAANYGGLGGNASKKDTAEYIYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEY 147
           AASAANYGG GGN+ +K +AEY+YDVPEGWKERLVSKVEKGTNGTDSEFYNPKK+TEKEY
Sbjct: 69  AASAANYGGYGGNSDRKTSAEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEY 128

Query: 148 LTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFLAEEKKDENGQIYYVYEIDGAGT 207
           LTFLAG RQL P+DVILNNLALSDV LQD IA A+  ++EE+KDE GQ+YY+YEIDG G 
Sbjct: 129 LTFLAGFRQLAPRDVILNNLALSDVELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGK 188

Query: 208 HSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGS 250
           HSLI+VTC+KN+LYAHFVNAP PEWNRD D L H+ +SFKT+ S
Sbjct: 189 HSLITVTCSKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFKTVSS 228

[Close]

BLAST of Lsi02G025820 vs. ExPASy TrEMBL
Match: A0A5D3CG07 (Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00930 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.3e-121
Identity = 228/250 (91.20%), Postives = 239/250 (95.60%), Query Frame = 0


Query: 1   MATAITLLAFFSAAAASTGTTAPRPPQAPPLLKPQIPILQSKPPLSTSTAPVSIAATAIA 60
           MATAI  LAF ++ AASTGTTAP+ PQ  PL KPQIPILQSK PLS STAP+SIAATAIA
Sbjct: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIA 60

Query: 61  VAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120
           VAAIL+T PPSLADTGAAFNVYYGTAASAANYGGLGGNA+KKDTAEY+YDVPEGWKERLV
Sbjct: 61  VAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SFLA+EKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTIGSY 251
           HESFKT+GSY
Sbjct: 241 HESFKTVGSY 250

[Close]

BLAST of Lsi02G025820 vs. ExPASy TrEMBL
Match: A0A1S3CES2 (thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499916 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.3e-121
Identity = 228/250 (91.20%), Postives = 239/250 (95.60%), Query Frame = 0


Query: 1   MATAITLLAFFSAAAASTGTTAPRPPQAPPLLKPQIPILQSKPPLSTSTAPVSIAATAIA 60
           MATAI  LAF ++ AASTGTTAP+ PQ  PL KPQIPILQSK PLS STAP+SIAATAIA
Sbjct: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIA 60

Query: 61  VAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120
           VAAIL+T PPSLADTGAAFNVYYGTAASAANYGGLGGNA+KKDTAEY+YDVPEGWKERLV
Sbjct: 61  VAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SFLA+EKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTIGSY 251
           HESFKT+GSY
Sbjct: 241 HESFKTVGSY 250

[Close]

BLAST of Lsi02G025820 vs. ExPASy TrEMBL
Match: A0A0A0K624 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428280 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 6.1e-119
Identity = 229/250 (91.60%), Postives = 237/250 (94.80%), Query Frame = 0


Query: 1   MATAITLLAFFSAAAASTGTTAPRPPQAPPLLKPQIPILQSKPPLSTSTAPVSIAATAIA 60
           MATAI  LAF +    STGTTAP+PPQA  L KPQIPILQSKPPLS STAP+SIAATAIA
Sbjct: 1   MATAIAPLAFLT----STGTTAPKPPQASSLPKPQIPILQSKPPLS-STAPISIAATAIA 60

Query: 61  VAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120
           VAAILST  PSLADTGAAFNVYYGTAASAANYGGLGGNA+KKDTAEYIYDVPEGWKERLV
Sbjct: 61  VAAILSTATPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYIYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SFLAEEKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLAEEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTIGSY 251
           H+SFKT+GSY
Sbjct: 241 HDSFKTVGSY 245

[Close]

BLAST of Lsi02G025820 vs. ExPASy TrEMBL
Match: A0A6J1JN94 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488417 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.7e-111
Identity = 217/250 (86.80%), Postives = 229/250 (91.60%), Query Frame = 0


Query: 1   MATAITLLAFFSAAAASTGTTAPRPPQAPPLLKPQIPILQSKPPLSTSTAPVSIAATAIA 60
           MATAI+ LAFFSAAAASTGTTAP+ PQ P +    IPILQSKP LS+ TA    A +AIA
Sbjct: 24  MATAISPLAFFSAAAASTGTTAPKLPQKPQI----IPILQSKPSLSSLTA----ACSAIA 83

Query: 61  VAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120
           +AAI+ST+PPSLAD G AFNVYYGTAASAANYGGLGGNA KKD+AEY+YDVP+GWKERLV
Sbjct: 84  IAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLV 143

Query: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 144 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 203

Query: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SF AEEKKDENGQIYY YEID AGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 204 SFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 263

Query: 241 HESFKTIGSY 251
           HESFKTIGSY
Sbjct: 264 HESFKTIGSY 265

[Close]

BLAST of Lsi02G025820 vs. ExPASy TrEMBL
Match: A0A6J1H7M1 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460820 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.6e-111
Identity = 218/253 (86.17%), Postives = 228/253 (90.12%), Query Frame = 0


Query: 1   MATAITLLAFFSA-AAASTGTTAPRPPQAPPLLKPQIPILQSKP--PLSTSTAPVSIAAT 60
           MATAI+ LAFFSA AAA+TG   P+P Q PPL KP IP+LQS P  PLS+ +AP+S    
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLSAPIS---- 60

Query: 61  AIAVAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKE 120
           AIAVAAILSTTPPSLAD G AFNVYYGTAASAANYGG GGNASKKD+AEYIYDVPEGWKE
Sbjct: 61  AIAVAAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKE 120

Query: 121 RLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 180
           RLVSKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIA
Sbjct: 121 RLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIA 180

Query: 181 SAESFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 240
           SAE   AEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDML
Sbjct: 181 SAEGISAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDML 240

Query: 241 RHVHESFKTIGSY 251
           RHVHESFKT+GSY
Sbjct: 241 RHVHESFKTVGSY 249

[Close]

BLAST of Lsi02G025820 vs. NCBI nr
Match: XP_038896859.1 (thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 471.9 bits (1213), Expect = 3.5e-129
Identity = 244/250 (97.60%), Postives = 246/250 (98.40%), Query Frame = 0


Query: 1   MATAITLLAFFSAAAASTGTTAPRPPQAPPLLKPQIPILQSKPPLSTSTAPVSIAATAIA 60
           MATAIT LAFFSAAAASTGTTAP+PPQ PPL KPQIPILQSKPPLSTSTAP+SIAAT IA
Sbjct: 1   MATAITPLAFFSAAAASTGTTAPKPPQTPPLPKPQIPILQSKPPLSTSTAPISIAATTIA 60

Query: 61  VAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120
           VAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV
Sbjct: 61  VAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTIGSY 251
           HESFKTIGSY
Sbjct: 241 HESFKTIGSY 250

[Close]

BLAST of Lsi02G025820 vs. NCBI nr
Match: XP_008461279.1 (PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis melo] >KAA0058638.1 thylakoid lumenal 19 kDa protein [Cucumis melo var. makuwa] >TYK10445.1 thylakoid lumenal 19 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 445.7 bits (1145), Expect = 2.7e-121
Identity = 228/250 (91.20%), Postives = 239/250 (95.60%), Query Frame = 0


Query: 1   MATAITLLAFFSAAAASTGTTAPRPPQAPPLLKPQIPILQSKPPLSTSTAPVSIAATAIA 60
           MATAI  LAF ++ AASTGTTAP+ PQ  PL KPQIPILQSK PLS STAP+SIAATAIA
Sbjct: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIA 60

Query: 61  VAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120
           VAAIL+T PPSLADTGAAFNVYYGTAASAANYGGLGGNA+KKDTAEY+YDVPEGWKERLV
Sbjct: 61  VAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SFLA+EKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTIGSY 251
           HESFKT+GSY
Sbjct: 241 HESFKTVGSY 250

[Close]

BLAST of Lsi02G025820 vs. NCBI nr
Match: XP_004135924.1 (thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis sativus] >KGN45140.1 hypothetical protein Csa_016904 [Cucumis sativus])

HSP 1 Score: 436.8 bits (1122), Expect = 1.3e-118
Identity = 229/250 (91.60%), Postives = 237/250 (94.80%), Query Frame = 0


Query: 1   MATAITLLAFFSAAAASTGTTAPRPPQAPPLLKPQIPILQSKPPLSTSTAPVSIAATAIA 60
           MATAI  LAF +    STGTTAP+PPQA  L KPQIPILQSKPPLS STAP+SIAATAIA
Sbjct: 1   MATAIAPLAFLT----STGTTAPKPPQASSLPKPQIPILQSKPPLS-STAPISIAATAIA 60

Query: 61  VAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120
           VAAILST  PSLADTGAAFNVYYGTAASAANYGGLGGNA+KKDTAEYIYDVPEGWKERLV
Sbjct: 61  VAAILSTATPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYIYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SFLAEEKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLAEEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTIGSY 251
           H+SFKT+GSY
Sbjct: 241 HDSFKTVGSY 245

[Close]

BLAST of Lsi02G025820 vs. NCBI nr
Match: XP_023547955.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 419.5 bits (1077), Expect = 2.1e-113
Identity = 221/251 (88.05%), Postives = 233/251 (92.83%), Query Frame = 0


Query: 1   MATAITLLAFFSAAAASTGTTAPRPPQAPPLLKPQ-IPILQSKPPLSTSTAPVSIAATAI 60
           MA AI+ LAFFSAAAASTGTTAP+ PQ PP  KPQ IPILQSKP LS+ TA    A +AI
Sbjct: 1   MAAAISPLAFFSAAAASTGTTAPKLPQIPPPQKPQIIPILQSKPSLSSLTA----AGSAI 60

Query: 61  AVAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERL 120
           A+AAI+ST+PPSLAD G AFNVYYGTAASAANYGGLGGNA+KKD+AEY+YDVP+GWKERL
Sbjct: 61  AIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERL 120

Query: 121 VSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180
           VSKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA
Sbjct: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180

Query: 181 ESFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 240
           ESF AEEKKDENGQIYY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH
Sbjct: 181 ESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 240

Query: 241 VHESFKTIGSY 251
           VHESFKTIGSY
Sbjct: 241 VHESFKTIGSY 247

[Close]

BLAST of Lsi02G025820 vs. NCBI nr
Match: KAG7025659.1 (Thylakoid lumenal 19 kDa protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 414.8 bits (1065), Expect = 5.1e-112
Identity = 220/253 (86.96%), Postives = 229/253 (90.51%), Query Frame = 0


Query: 1   MATAITLLAFFSA-AAASTGTTAPRPPQAPPLLKPQIPILQSKP--PLSTSTAPVSIAAT 60
           MATAI+ LAFFSA AAA+TG   P+P Q PPL KP IP+LQS P  PLS+ TAP+S    
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPIS---- 60

Query: 61  AIAVAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKE 120
           AIAVAAILSTTPPSLAD G AFNVYYGTAASAANYGG GGNASKKD+AEYIYDVPEGWKE
Sbjct: 61  AIAVAAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKE 120

Query: 121 RLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 180
           RLVSKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIA
Sbjct: 121 RLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIA 180

Query: 181 SAESFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 240
           SAE F AEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDML
Sbjct: 181 SAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDML 240

Query: 241 RHVHESFKTIGSY 251
           RHVHESFKT+GSY
Sbjct: 241 RHVHESFKTVGSY 249

[Close]

BLAST of Lsi02G025820 vs. TAIR 10
Match: AT3G63540.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 236.5 bits (602), Expect = 2.3e-62
Identity = 109/140 (77.86%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 110 DVPEGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSD 169
           +V EGWKERLVSKVEKGTNGTDSEFYNPKK+TEKEYLTFLAG RQL P+DVILNNLALSD
Sbjct: 3   EVEEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSD 62

Query: 170 VNLQDQIASAESFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPE 229
           V LQD IA A+  ++EE+KDE GQ+YY+YEIDG G HSLI+VTC+KNKLYAHFVNAP PE
Sbjct: 63  VELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNKLYAHFVNAPAPE 122

Query: 230 WNRDQDMLRHVHESFKTIGS 250
           WNRD D L H+ +SFKT+ S
Sbjct: 123 WNRDHDTLTHLRDSFKTVSS 142

The following BLAST results are available for this feature:

BLAST of Lsi02G025820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82658	4.7e-76	64.29	Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Lsi02G025820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CG07	1.3e-121	91.20	Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CES2	1.3e-121	91.20	thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0K624	6.1e-119	91.60	PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428280 PE=4 S...	[more]
A0A6J1JN94	2.7e-111	86.80	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1H7M1	3.6e-111	86.17	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=36...	[more]

BLAST of Lsi02G025820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896859.1	3.5e-129	97.60	thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida]	[more]
XP_008461279.1	2.7e-121	91.20	PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis melo] >KAA00...	[more]
XP_004135924.1	1.3e-118	91.60	thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis sativus] >KGN45140.1 hy...	[more]
XP_023547955.1	2.1e-113	88.05	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo...	[more]
KAG7025659.1	5.1e-112	86.96	Thylakoid lumenal 19 kDa protein, chloroplastic [Cucurbita argyrosperma subsp. a...	[more]

BLAST of Lsi02G025820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63540.1	2.3e-62	77.86	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 104..245 e-value: 6.5E-11 score: 42.6
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 86..246 e-value: 6.3E-17 score: 64.0
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 13..247
None	No IPR available	PANTHER	PTHR31407:SF20	THYLAKOID LUMENAL 19 KDA PROTEIN, CHLOROPLASTIC	coord: 13..247
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 103..246

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G025820.1	Lsi02G025820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding