Lsi02G025640 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G025640
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein TAB2 homolog, chloroplastic
Location	chr02: 32120543 .. 32123042 (-)
RNA-Seq Expression	Lsi02G025640
Synteny	Lsi02G025640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAGGTTGAGAATTGAGAGAGCCCAAGAAAACACAAATTTCCTGAAAGGATATTTTGTGGCGGAAAAATAACTAACAAAACTGGCTCTCTCTCTGTCTCAACTCACAAAGCTTATCTTACTGAGGGAGCTCCTCTTCAATGGCGACCTTAAGCTTCAACCCCACCAGAATAAGAACCCTAGGTGGACTTCATTTTAGAAAATCCAAACATAGTTCGTTGCCATTTTCACAATCGATCAAAACCGCAAACAGATTCTCAGCCAGTGGCCGTATCAATCAGCAACCACTACGGCGTTTTCGATCAAATTCTGTATCGGAAAGCTCGGTTTCGGTGCCGGAAGAGGTGGAATTGAAAGAGGATGTGGATGACCCGACCTTGGAGTTGGCCTATTTGGATCCGGAAACCGATCCGGAGAGCATTACGGAGTGGGAGCTAGATTTCTGCTCCAGACCTATTTTGGATATCAGAGGGAAGAAGGTGTGGGAGCTTGTAGCCTGTGATAATTCGCTCTCGCTTCAATACACGAAGTATTTTCCTAACAATGTTATTAATAGCATTACTTTGAGAGACGCGATTTCCGCAATCACTGAAGAGTTGGGGGTACCATTACCAGAGAAAATCCGCTTCTTCAGGTACATTTTCTGATTGATTAAGCTCGTTTAGATAAATATGATACAATACAATGTTGTGTTTATGCATCTGAATTTCAAAATATGTCTGAAACTGTGGACAAAATCTCCTATGATTGAGTCGTTTTAGCAAATTGTTGAAGAATGGTGTCTTCATATGATTGAAATGTTGATGGGATTATAGGTCACAGATGCAGACAATCATTACAAAAGCATGTACCGAGCTTGGCATAAAGCCCATTCCTAGTAAAAGGGTTGGTAGTTATGAATTTATAGGTGTTTTCTTCGATTCTGTTTCTTTGTGAAGTTGACTGGATTTAGGTTATGAATTAGACTCTTTCTGTCCTCAAGACTTTCCATTGTTCCCATCAGTGTCTTTCCCTGCTTTTGTGGCTGGAAGAGCGATACGAGACCGTTTATACACGTCATCCAGGTTTTCAGAAAGGATCTAAGCCCCTCCTTGCATTAGATAATCCATTTCCAATGGAACTTCCAGAGAATCTTTTCGGGGAGAAGTGGGCATTTGTCCAATTGCCTTTTTCAGGTATACCAATAGTTTTTCTTCCTTTGCTTTGCATTGACTCTAAGCATGGCTGAAGAGTTGTTGCTTTACCTTACAAGGGGATGTTGCTTTGTTGTTCTTATAGTCCCTGTAATTACTTGGTCTTCCATTAATTTTCAGCTGTTCAAGAGGAGGTATCAAACTTAAAGGAAACTTTCATGTTTGGTTCCAGTCTTGATCTGGATTTACTGGGGATCGAAATTGATGAGAAGACAATGATCCCAGGGTTGTCTGTTGCAACTTCACGAGCTCAACCATTGGCAGGTATGCCACCACTCTATGATCATTGAGAGTTATGGTGTTCTCAAACATTCGGAAACAAATGATTCACAACAAACTCCTTTATCTCTCTAGTTTTGATCTTCCCATTCTACTACATTGTTCTTCCCAAAGATTTTATATGCCCCTACCATTGTAGAATAATATAACTGGTCAAATTATAAGTACCATTGTAGAATAATATAATTGGTCAAATTATAAGTTTAGTCCTTAAATTGTAATGTTTGTGTCCCATAAATCTTTGAAATTAAAAAGAAAAAATACATATTCATTTTGGGTCTAATAGGGGCCCTAAATTGAAAAAGTGTAACAAATCTGAGTTTTCAATTTGGTACCTGACATACAACATACTCAACATTTTAAAATATTATCAAATTTATTAGACATAAAATATGGATTGTAAATTTCAAATTTTATGTCTAATAAATTTGTCGATGATTACTAAACATAAAGTTCAAAATTTACAGACTTAATCAACACAAAAGTAAAAGTTTATGGACTATCACTAAAAAAAGATTAAAATCAATGATTAATTACACACAAAACTTTGATGAAGTTGGGATTGAAATTGTGATTTAATTTGAAGTTGGGATTGAAATTGTGATTTAACTTAGATTTTGTGAGGTAAGAAATTTCACTCTGCTGTTTCATACATGTTCACCAAACAATACTTTGCAGCATGATAGCTATAAAACAATCTTCCATTTGATCTCTTTTTGTGTATTCCACAGCTTGGATGAATGGAATGGAAGTATATTCAGTCGAAGCTGATACGTCTCGTGCTTGTTTGATTCTATCCGTCGGGATCGCAACTCGATATGTCTACGCTACTTATAAAAAAACACCAGTGACAACTGCTGAGGCCGAAGCTTGGGAAGCAGCCAAAAAGGCTTGTGGAGGCTTGCATTTTCTTGCCATACAAGACGACTTGGATTCAGAGGACTGTGTTGGATTCTGGCTTCTACTAGACTTGCCGCCACCACCAGTATAATCGGTGAAGTTCCCCCCCCCCCCCCCCCCCCCCCCCCC

mRNA sequence

TAAAGGTTGAGAATTGAGAGAGCCCAAGAAAACACAAATTTCCTGAAAGGATATTTTGTGGCGGAAAAATAACTAACAAAACTGGCTCTCTCTCTGTCTCAACTCACAAAGCTTATCTTACTGAGGGAGCTCCTCTTCAATGGCGACCTTAAGCTTCAACCCCACCAGAATAAGAACCCTAGGTGGACTTCATTTTAGAAAATCCAAACATAGTTCGTTGCCATTTTCACAATCGATCAAAACCGCAAACAGATTCTCAGCCAGTGGCCGTATCAATCAGCAACCACTACGGCGTTTTCGATCAAATTCTGTATCGGAAAGCTCGGTTTCGGTGCCGGAAGAGGTGGAATTGAAAGAGGATGTGGATGACCCGACCTTGGAGTTGGCCTATTTGGATCCGGAAACCGATCCGGAGAGCATTACGGAGTGGGAGCTAGATTTCTGCTCCAGACCTATTTTGGATATCAGAGGGAAGAAGGTGTGGGAGCTTGTAGCCTGTGATAATTCGCTCTCGCTTCAATACACGAAGTATTTTCCTAACAATGTTATTAATAGCATTACTTTGAGAGACGCGATTTCCGCAATCACTGAAGAGTTGGGGGTACCATTACCAGAGAAAATCCGCTTCTTCAGGTCACAGATGCAGACAATCATTACAAAAGCATGTACCGAGCTTGGCATAAAGCCCATTCCTAGTAAAAGGTGTCTTTCCCTGCTTTTGTGGCTGGAAGAGCGATACGAGACCGTTTATACACGTCATCCAGGTTTTCAGAAAGGATCTAAGCCCCTCCTTGCATTAGATAATCCATTTCCAATGGAACTTCCAGAGAATCTTTTCGGGGAGAAGTGGGCATTTGTCCAATTGCCTTTTTCAGCTGTTCAAGAGGAGGTATCAAACTTAAAGGAAACTTTCATGTTTGGTTCCAGTCTTGATCTGGATTTACTGGGGATCGAAATTGATGAGAAGACAATGATCCCAGGGTTGTCTGTTGCAACTTCACGAGCTCAACCATTGGCAGCTTGGATGAATGGAATGGAAGTATATTCAGTCGAAGCTGATACGTCTCGTGCTTGTTTGATTCTATCCGTCGGGATCGCAACTCGATATGTCTACGCTACTTATAAAAAAACACCAGTGACAACTGCTGAGGCCGAAGCTTGGGAAGCAGCCAAAAAGGCTTGTGGAGGCTTGCATTTTCTTGCCATACAAGACGACTTGGATTCAGAGGACTGTGTTGGATTCTGGCTTCTACTAGACTTGCCGCCACCACCAGTATAATCGGTGAAGTTCCCCCCCCCCCCCCCCCCCCCCCCCCC

Coding sequence (CDS)

ATGGCGACCTTAAGCTTCAACCCCACCAGAATAAGAACCCTAGGTGGACTTCATTTTAGAAAATCCAAACATAGTTCGTTGCCATTTTCACAATCGATCAAAACCGCAAACAGATTCTCAGCCAGTGGCCGTATCAATCAGCAACCACTACGGCGTTTTCGATCAAATTCTGTATCGGAAAGCTCGGTTTCGGTGCCGGAAGAGGTGGAATTGAAAGAGGATGTGGATGACCCGACCTTGGAGTTGGCCTATTTGGATCCGGAAACCGATCCGGAGAGCATTACGGAGTGGGAGCTAGATTTCTGCTCCAGACCTATTTTGGATATCAGAGGGAAGAAGGTGTGGGAGCTTGTAGCCTGTGATAATTCGCTCTCGCTTCAATACACGAAGTATTTTCCTAACAATGTTATTAATAGCATTACTTTGAGAGACGCGATTTCCGCAATCACTGAAGAGTTGGGGGTACCATTACCAGAGAAAATCCGCTTCTTCAGGTCACAGATGCAGACAATCATTACAAAAGCATGTACCGAGCTTGGCATAAAGCCCATTCCTAGTAAAAGGTGTCTTTCCCTGCTTTTGTGGCTGGAAGAGCGATACGAGACCGTTTATACACGTCATCCAGGTTTTCAGAAAGGATCTAAGCCCCTCCTTGCATTAGATAATCCATTTCCAATGGAACTTCCAGAGAATCTTTTCGGGGAGAAGTGGGCATTTGTCCAATTGCCTTTTTCAGCTGTTCAAGAGGAGGTATCAAACTTAAAGGAAACTTTCATGTTTGGTTCCAGTCTTGATCTGGATTTACTGGGGATCGAAATTGATGAGAAGACAATGATCCCAGGGTTGTCTGTTGCAACTTCACGAGCTCAACCATTGGCAGCTTGGATGAATGGAATGGAAGTATATTCAGTCGAAGCTGATACGTCTCGTGCTTGTTTGATTCTATCCGTCGGGATCGCAACTCGATATGTCTACGCTACTTATAAAAAAACACCAGTGACAACTGCTGAGGCCGAAGCTTGGGAAGCAGCCAAAAAGGCTTGTGGAGGCTTGCATTTTCTTGCCATACAAGACGACTTGGATTCAGAGGACTGTGTTGGATTCTGGCTTCTACTAGACTTGCCGCCACCACCAGTATAA

Protein sequence

MATLSFNPTRIRTLGGLHFRKSKHSSLPFSQSIKTANRFSASGRINQQPLRRFRSNSVSESSVSVPEEVELKEDVDDPTLELAYLDPETDPESITEWELDFCSRPILDIRGKKVWELVACDNSLSLQYTKYFPNNVINSITLRDAISAITEELGVPLPEKIRFFRSQMQTIITKACTELGIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKWAFVQLPFSAVQEEVSNLKETFMFGSSLDLDLLGIEIDEKTMIPGLSVATSRAQPLAAWMNGMEVYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDLDSEDCVGFWLLLDLPPPPV

Homology

[Close]

BLAST of Lsi02G025640 vs. ExPASy Swiss-Prot
Match: Q9SFB3 (Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATAB2 PE=2 SV=1)

HSP 1 Score: 558.1 bits (1437), Expect = 7.4e-158
Identity = 280/381 (73.49%), Postives = 320/381 (83.99%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFRKSKHSSLPFSQSIKTANRFSASGRINQQPLRRFRSNSVSE 60
           MATL FN  RI+T       K       F++ IKT + FS+   + +    RF S S+ E
Sbjct: 1   MATLGFNTRRIQTPSLPRIPKPS----SFTKPIKTHHLFSSETLLKR---CRFVSRSLPE 60

Query: 61  SSVSVPEEVELKEDV--DDPTLELAYLDPETDPESITEWELDFCSRPILDIRGKKVWELV 120
           SS+S+ +E E+  +V  DDPT EL+YLDPE+D +SI EWELDFCSRPILD RGKK+WELV
Sbjct: 61  SSLSITKEQEVANEVEEDDPTSELSYLDPESDADSIKEWELDFCSRPILDSRGKKIWELV 120

Query: 121 ACDNSLSLQYTKYFPNNVINSITLRDAISAITEELGVPLPEKIRFFRSQMQTIITKACTE 180
            CD SLSLQ TKYFPNNVINSITL+DAI  IT++LGVPLPEKIRFFRSQMQTIITKAC E
Sbjct: 121 VCDASLSLQVTKYFPNNVINSITLKDAIVTITQDLGVPLPEKIRFFRSQMQTIITKACKE 180

Query: 181 LGIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKWA 240
           L IK +PSKRCLSL LWL+ERY+TVYTRHPGFQKGS PLL+LDNPFPM LPENLFGEKWA
Sbjct: 181 LAIKAVPSKRCLSLFLWLQERYDTVYTRHPGFQKGSLPLLSLDNPFPMNLPENLFGEKWA 240

Query: 241 FVQLPFSAVQEEVSNLKETFMFGSSLDLDLLGIEIDEKTMIPGLSVATSRAQPLAAWMNG 300
           FVQLP+SAV+EE+S+  E F+FG+SLDLDLLGIE+DE T+IPGLSVATSRA+PLAAWMNG
Sbjct: 241 FVQLPYSAVREEISDFDEKFVFGASLDLDLLGIEVDENTLIPGLSVATSRAKPLAAWMNG 300

Query: 301 MEVYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQD 360
           +EV S+EAD+S+ CLILSVGIATRYVYATYKKTPVTT EAEAWE+AKK  GGLHFLAIQD
Sbjct: 301 LEVCSIEADSSKGCLILSVGIATRYVYATYKKTPVTTDEAEAWESAKKTSGGLHFLAIQD 360

Query: 361 DLDSEDCVGFWLLLDLPPPPV 380
           DLDS+DCVGFWLL+DLPPPPV
Sbjct: 361 DLDSDDCVGFWLLIDLPPPPV 374

[Close]

BLAST of Lsi02G025640 vs. ExPASy Swiss-Prot
Match: B4FTR7 (Protein TAB2 homolog, chloroplastic OS=Zea mays OX=4577 GN=TAB2 PE=2 SV=1)

HSP 1 Score: 490.7 bits (1262), Expect = 1.5e-137
Identity = 228/332 (68.67%), Postives = 284/332 (85.54%), Query Frame = 0


Query: 51  RRFRSNSVSESSVS---VPEEVELKEDVDDPTLELAYLDPETDPESITEWELDFCSRPIL 110
           R   S S +E+S +     EEVE +  V DP  E+ YLDP+ DPESI EWELDFCSRPIL
Sbjct: 60  RSISSESSTEASAAADIADEEVEAENKV-DPQAEVCYLDPDVDPESIREWELDFCSRPIL 119

Query: 111 DIRGKKVWELVACDNSLSLQYTKYFPNNVINSITLRDAISAITEELGVPLPEKIRFFRSQ 170
           D RGKKVWELV CD +LSLQ+T+YFPNN INS+TLRDA+++++E LGVP+P+++RFFRSQ
Sbjct: 120 DARGKKVWELVVCDATLSLQFTRYFPNNAINSVTLRDALASVSEALGVPMPDRVRFFRSQ 179

Query: 171 MQTIITKACTELGIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPME 230
           MQTIIT+AC +LG+K +PS+RC+SLLLWLEERYE VY+RHPGFQ G++PLLALDNPFP  
Sbjct: 180 MQTIITRACGDLGVKAVPSRRCVSLLLWLEERYEVVYSRHPGFQAGTRPLLALDNPFPTT 239

Query: 231 LPENLFGEKWAFVQLPFSAVQEEVSNLKETFMFGSSLDLDLLGIEIDEKTMIPGLSVATS 290
           LPENLFG+KWAFVQLPFSAV+EEV +L+  + FG+ LDL+LLG E+D+ T++PG++V +S
Sbjct: 240 LPENLFGDKWAFVQLPFSAVREEVESLERRYAFGAGLDLELLGFELDDTTLVPGVAVESS 299

Query: 291 RAQPLAAWMNGMEVYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKA 350
           RA+PLAAWMNG+E+ ++EADT RA LILS G++TRYVY+ Y+KT  +T EAEAWEAAKKA
Sbjct: 300 RAKPLAAWMNGLEICAMEADTGRASLILSAGVSTRYVYSGYQKTAASTQEAEAWEAAKKA 359

Query: 351 CGGLHFLAIQDDLDSEDCVGFWLLLDLPPPPV 380
           CGGLHFLAIQ++L+S+ CVGFWLLLDLPPPPV
Sbjct: 360 CGGLHFLAIQENLNSDGCVGFWLLLDLPPPPV 390

[Close]

BLAST of Lsi02G025640 vs. ExPASy Swiss-Prot
Match: Q6K9C1 (Protein TAB2 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0610800 PE=2 SV=1)

HSP 1 Score: 481.9 bits (1239), Expect = 6.8e-135
Identity = 227/337 (67.36%), Postives = 276/337 (81.90%), Query Frame = 0


Query: 52  RFRSNSVSESSVSVPEEVELKEDVD---------DPTLELAYLDPETDPESITEWELDFC 111
           R RS S   S+ +  +  + +E+V          DP  E+ YLDPE D E I EWELDFC
Sbjct: 56  RCRSVSSESSTAAAADTADDEEEVTKSDSEEEEMDPLAEVCYLDPEADAEGIREWELDFC 115

Query: 112 SRPILDIRGKKVWELVACDNSLSLQYTKYFPNNVINSITLRDAISAITEELGVPLPEKIR 171
           SRPILD RGKKVWELV CD +LSLQ+T++FPN  INS+TLRDA++++   LGVPLP++ R
Sbjct: 116 SRPILDARGKKVWELVVCDATLSLQFTRFFPNTSINSVTLRDALASVATSLGVPLPDRAR 175

Query: 172 FFRSQMQTIITKACTELGIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDN 231
           FFRSQMQTII++AC ELG+K +PS+RC+SLLLWLEERYETVY+RHPGFQ G+KPLL LDN
Sbjct: 176 FFRSQMQTIISRACNELGVKAVPSRRCVSLLLWLEERYETVYSRHPGFQSGTKPLLTLDN 235

Query: 232 PFPMELPENLFGEKWAFVQLPFSAVQEEVSNLKETFMFGSSLDLDLLGIEIDEKTMIPGL 291
           PFP  LPENLFG+KWAFVQLPFSAV+EEV +L+  + FG+ LDLDLLG E+DE T+IPG+
Sbjct: 236 PFPTSLPENLFGDKWAFVQLPFSAVREEVESLERRYAFGAGLDLDLLGFELDENTLIPGV 295

Query: 292 SVATSRAQPLAAWMNGMEVYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWE 351
           +V +SRA+PLAAWMNG+E+ S+E DT RA LILS G++TRYVYA Y+K+  TT EAEAWE
Sbjct: 296 AVESSRAKPLAAWMNGLEICSMEVDTGRANLILSAGVSTRYVYAGYQKSAATTQEAEAWE 355

Query: 352 AAKKACGGLHFLAIQDDLDSEDCVGFWLLLDLPPPPV 380
           AAKKACGGLHFLAIQ++L+S+ CVGFWLLLDLPPPPV
Sbjct: 356 AAKKACGGLHFLAIQENLNSDGCVGFWLLLDLPPPPV 392

[Close]

BLAST of Lsi02G025640 vs. ExPASy TrEMBL
Match: A0A5A7UYM5 (DUF1092 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G00880 PE=4 SV=1)

HSP 1 Score: 724.9 bits (1870), Expect = 1.7e-205
Identity = 360/379 (94.99%), Postives = 369/379 (97.36%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFRKSKHSSLPFSQSIKTANRFSASGRINQQPLRRFRSNSVSE 60
           MATLSFNPTRIRTL GLHF KSK  S PFSQSIKTANRFSA+GRI+QQPLRRF+SNSVSE
Sbjct: 1   MATLSFNPTRIRTLVGLHFTKSKPISSPFSQSIKTANRFSANGRISQQPLRRFQSNSVSE 60

Query: 61  SSVSVPEEVELKEDVDDPTLELAYLDPETDPESITEWELDFCSRPILDIRGKKVWELVAC 120
           SSVSVPEEVEL ED DDPTLE+AYLD ETDPESITEWELDFCSRPILDIRGKKVWELV C
Sbjct: 61  SSVSVPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC 120

Query: 121 DNSLSLQYTKYFPNNVINSITLRDAISAITEELGVPLPEKIRFFRSQMQTIITKACTELG 180
           DNSLSLQYTKYFPNNVINSITLRDAIS+I EELGVPLPEKIRFFRSQMQTIITKACTELG
Sbjct: 121 DNSLSLQYTKYFPNNVINSITLRDAISSIAEELGVPLPEKIRFFRSQMQTIITKACTELG 180

Query: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKWAFV 240
           IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGE+WAFV
Sbjct: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV 240

Query: 241 QLPFSAVQEEVSNLKETFMFGSSLDLDLLGIEIDEKTMIPGLSVATSRAQPLAAWMNGME 300
           QLPFSAVQEE+SNLKETFMFGSSLDLDLLGI+ID+KTMIPGLSVATSRAQPLAAWMNGME
Sbjct: 241 QLPFSAVQEEISNLKETFMFGSSLDLDLLGIDIDDKTMIPGLSVATSRAQPLAAWMNGME 300

Query: 301 VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL 360
           VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL
Sbjct: 301 VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL 360

Query: 361 DSEDCVGFWLLLDLPPPPV 380
           DSEDCVGFWLLLDLPPPPV
Sbjct: 361 DSEDCVGFWLLLDLPPPPV 379

[Close]

BLAST of Lsi02G025640 vs. ExPASy TrEMBL
Match: A0A1S3CEE7 (uncharacterized protein LOC103499936 OS=Cucumis melo OX=3656 GN=LOC103499936 PE=4 SV=1)

HSP 1 Score: 724.9 bits (1870), Expect = 1.7e-205
Identity = 360/379 (94.99%), Postives = 369/379 (97.36%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFRKSKHSSLPFSQSIKTANRFSASGRINQQPLRRFRSNSVSE 60
           MATLSFNPTRIRTL GLHF KSK  S PFSQSIKTANRFSA+GRI+QQPLRRF+SNSVSE
Sbjct: 1   MATLSFNPTRIRTLVGLHFTKSKPISSPFSQSIKTANRFSANGRISQQPLRRFQSNSVSE 60

Query: 61  SSVSVPEEVELKEDVDDPTLELAYLDPETDPESITEWELDFCSRPILDIRGKKVWELVAC 120
           SSVSVPEEVEL ED DDPTLE+AYLD ETDPESITEWELDFCSRPILDIRGKKVWELV C
Sbjct: 61  SSVSVPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC 120

Query: 121 DNSLSLQYTKYFPNNVINSITLRDAISAITEELGVPLPEKIRFFRSQMQTIITKACTELG 180
           DNSLSLQYTKYFPNNVINSITLRDAIS+I EELGVPLPEKIRFFRSQMQTIITKACTELG
Sbjct: 121 DNSLSLQYTKYFPNNVINSITLRDAISSIAEELGVPLPEKIRFFRSQMQTIITKACTELG 180

Query: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKWAFV 240
           IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGE+WAFV
Sbjct: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV 240

Query: 241 QLPFSAVQEEVSNLKETFMFGSSLDLDLLGIEIDEKTMIPGLSVATSRAQPLAAWMNGME 300
           QLPFSAVQEE+SNLKETFMFGSSLDLDLLGI+ID+KTMIPGLSVATSRAQPLAAWMNGME
Sbjct: 241 QLPFSAVQEEISNLKETFMFGSSLDLDLLGIDIDDKTMIPGLSVATSRAQPLAAWMNGME 300

Query: 301 VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL 360
           VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL
Sbjct: 301 VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL 360

Query: 361 DSEDCVGFWLLLDLPPPPV 380
           DSEDCVGFWLLLDLPPPPV
Sbjct: 361 DSEDCVGFWLLLDLPPPPV 379

[Close]

BLAST of Lsi02G025640 vs. ExPASy TrEMBL
Match: A0A5D3CGT0 (DUF1092 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00740 PE=4 SV=1)

HSP 1 Score: 721.8 bits (1862), Expect = 1.4e-204
Identity = 358/379 (94.46%), Postives = 368/379 (97.10%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFRKSKHSSLPFSQSIKTANRFSASGRINQQPLRRFRSNSVSE 60
           MATLSFNPTRIRTL GLHF KSK  S PFSQSIKTANRFSA+GRI+QQPLRRF+SNSVSE
Sbjct: 1   MATLSFNPTRIRTLVGLHFTKSKPISSPFSQSIKTANRFSANGRISQQPLRRFQSNSVSE 60

Query: 61  SSVSVPEEVELKEDVDDPTLELAYLDPETDPESITEWELDFCSRPILDIRGKKVWELVAC 120
           SSVSVPEEVEL ED DDPTLE+AYLD ETDPESITEWELDFCSRPILDIRGKKVWELV C
Sbjct: 61  SSVSVPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC 120

Query: 121 DNSLSLQYTKYFPNNVINSITLRDAISAITEELGVPLPEKIRFFRSQMQTIITKACTELG 180
           DNSL+LQYTKYFPNNVINSITLRDAIS+I EELGVPLPEK RFFRSQMQTIITKACTELG
Sbjct: 121 DNSLALQYTKYFPNNVINSITLRDAISSIAEELGVPLPEKTRFFRSQMQTIITKACTELG 180

Query: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKWAFV 240
           IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGE+WAFV
Sbjct: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV 240

Query: 241 QLPFSAVQEEVSNLKETFMFGSSLDLDLLGIEIDEKTMIPGLSVATSRAQPLAAWMNGME 300
           QLPFSAVQEE+SNLKETFMFGSSLDLDLLGI+ID+KTMIPGLSVATSRAQPLAAWMNGME
Sbjct: 241 QLPFSAVQEEISNLKETFMFGSSLDLDLLGIDIDDKTMIPGLSVATSRAQPLAAWMNGME 300

Query: 301 VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL 360
           VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL
Sbjct: 301 VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL 360

Query: 361 DSEDCVGFWLLLDLPPPPV 380
           DSEDCVGFWLLLDLPPPPV
Sbjct: 361 DSEDCVGFWLLLDLPPPPV 379

[Close]

BLAST of Lsi02G025640 vs. ExPASy TrEMBL
Match: A0A0A0K8A7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G427090 PE=4 SV=1)

HSP 1 Score: 716.5 bits (1848), Expect = 6.0e-203
Identity = 355/379 (93.67%), Postives = 366/379 (96.57%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFRKSKHSSLPFSQSIKTANRFSASGRINQQPLRRFRSNSVSE 60
           MATLSFNPTRIRTLGGLHF KSK    PFSQSIKTANRFSA+GRI+QQPL RFRSNSVSE
Sbjct: 1   MATLSFNPTRIRTLGGLHFTKSKPIYSPFSQSIKTANRFSANGRISQQPLPRFRSNSVSE 60

Query: 61  SSVSVPEEVELKEDVDDPTLELAYLDPETDPESITEWELDFCSRPILDIRGKKVWELVAC 120
           SSV+ PEEVEL ED DDPTLE+AYLD ETDPESITEWELDFCSRPILDIRGKKVWELV C
Sbjct: 61  SSVTAPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC 120

Query: 121 DNSLSLQYTKYFPNNVINSITLRDAISAITEELGVPLPEKIRFFRSQMQTIITKACTELG 180
           DNSLSLQYTKYFPNNVINSITLRDA+S+I EELGVPLP+KIRFFRSQMQTIITKACTELG
Sbjct: 121 DNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTELG 180

Query: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKWAFV 240
           IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGE+WAFV
Sbjct: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV 240

Query: 241 QLPFSAVQEEVSNLKETFMFGSSLDLDLLGIEIDEKTMIPGLSVATSRAQPLAAWMNGME 300
           QLPFSAVQEE+SNLKETFMFGSSLDLDLLGIEID+KTMIPGLSVATSRAQPLAAWMNGME
Sbjct: 241 QLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNGME 300

Query: 301 VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL 360
           VYSVEADTSRA LILSVGIATRYVYATYKKTPVT+AEAEAWEAAKKACGGLHFLAIQDDL
Sbjct: 301 VYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQDDL 360

Query: 361 DSEDCVGFWLLLDLPPPPV 380
           DSEDCVGFWLLLDLPPPPV
Sbjct: 361 DSEDCVGFWLLLDLPPPPV 379

[Close]

BLAST of Lsi02G025640 vs. ExPASy TrEMBL
Match: A0A6J1H921 (protein TAB2 homolog, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111460742 PE=4 SV=1)

HSP 1 Score: 699.9 bits (1805), Expect = 5.8e-198
Identity = 351/381 (92.13%), Postives = 361/381 (94.75%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFRKSKHSSLPFSQSIKTANRFSASGRINQQPLRRFRSNSVSE 60
           MATLSFNPTRIRT GGLH  K K  SLPFSQSIKT  RFSA  RINQQ LRRFRSNSVSE
Sbjct: 1   MATLSFNPTRIRTPGGLHLCKPKPRSLPFSQSIKTPKRFSADFRINQQLLRRFRSNSVSE 60

Query: 61  SSVSVPEEVE--LKEDVDDPTLELAYLDPETDPESITEWELDFCSRPILDIRGKKVWELV 120
           SS+SVPEEVE  + ED DDPTLELAYLD ETDPESITEWELDFCSRPILDIRGKKVWELV
Sbjct: 61  SSISVPEEVEVAVDEDEDDPTLELAYLDSETDPESITEWELDFCSRPILDIRGKKVWELV 120

Query: 121 ACDNSLSLQYTKYFPNNVINSITLRDAISAITEELGVPLPEKIRFFRSQMQTIITKACTE 180
           ACDNSLSLQYTKYFPNNVINSITLRDAIS+ITEELGVPLPEKIRFFRSQMQTIITKACTE
Sbjct: 121 ACDNSLSLQYTKYFPNNVINSITLRDAISSITEELGVPLPEKIRFFRSQMQTIITKACTE 180

Query: 181 LGIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKWA 240
           LG+KPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELP+NLFGE+WA
Sbjct: 181 LGVKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGERWA 240

Query: 241 FVQLPFSAVQEEVSNLKETFMFGSSLDLDLLGIEIDEKTMIPGLSVATSRAQPLAAWMNG 300
           FVQLPFSAVQEEVSNL  +FMFGSSLDLDLLGIEID+ TMIPGLSVA+SRAQPLAAWMNG
Sbjct: 241 FVQLPFSAVQEEVSNLNASFMFGSSLDLDLLGIEIDDNTMIPGLSVASSRAQPLAAWMNG 300

Query: 301 MEVYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQD 360
           MEVYSVEADTSRACLILSVGI+TRYVYATYKK PVTTAEAEAWEAAKKACGGLHFLAIQD
Sbjct: 301 MEVYSVEADTSRACLILSVGISTRYVYATYKKNPVTTAEAEAWEAAKKACGGLHFLAIQD 360

Query: 361 DLDSEDCVGFWLLLDLPPPPV 380
           DLDSEDCVGFWLLLDLPPPPV
Sbjct: 361 DLDSEDCVGFWLLLDLPPPPV 381

[Close]

BLAST of Lsi02G025640 vs. NCBI nr
Match: XP_038900264.1 (protein TAB2 homolog, chloroplastic [Benincasa hispida])

HSP 1 Score: 738.0 bits (1904), Expect = 4.0e-209
Identity = 369/379 (97.36%), Postives = 370/379 (97.63%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFRKSKHSSLPFSQSIKTANRFSASGRINQQPLRRFRSNSVSE 60
           MATLSFNPTRIRTLGGLHF KSK SS PFSQSIKT NRFSASGRINQQPLRRFRSNSVSE
Sbjct: 1   MATLSFNPTRIRTLGGLHFSKSKPSSSPFSQSIKTVNRFSASGRINQQPLRRFRSNSVSE 60

Query: 61  SSVSVPEEVELKEDVDDPTLELAYLDPETDPESITEWELDFCSRPILDIRGKKVWELVAC 120
           SSVS PEEVEL ED DDPTLELAYLD  TDPESITEWELDFCSRPILDIRGKKVWELVAC
Sbjct: 61  SSVSAPEEVELNEDEDDPTLELAYLDAATDPESITEWELDFCSRPILDIRGKKVWELVAC 120

Query: 121 DNSLSLQYTKYFPNNVINSITLRDAISAITEELGVPLPEKIRFFRSQMQTIITKACTELG 180
           DNSLSLQYTKYFPNNVINSITLRDAIS+ITEELGVPLPEKIRFFRSQMQTIITKACTELG
Sbjct: 121 DNSLSLQYTKYFPNNVINSITLRDAISSITEELGVPLPEKIRFFRSQMQTIITKACTELG 180

Query: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKWAFV 240
           IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKWAFV
Sbjct: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKWAFV 240

Query: 241 QLPFSAVQEEVSNLKETFMFGSSLDLDLLGIEIDEKTMIPGLSVATSRAQPLAAWMNGME 300
           QLPFSAVQEEVSNLKETFMFGSSLDLDLLGIEIDEKTMIPGLSVATSRAQPLAAWMNGME
Sbjct: 241 QLPFSAVQEEVSNLKETFMFGSSLDLDLLGIEIDEKTMIPGLSVATSRAQPLAAWMNGME 300

Query: 301 VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL 360
           VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL
Sbjct: 301 VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL 360

Query: 361 DSEDCVGFWLLLDLPPPPV 380
           DSEDCVGFWLLLDLPPPPV
Sbjct: 361 DSEDCVGFWLLLDLPPPPV 379

[Close]

BLAST of Lsi02G025640 vs. NCBI nr
Match: XP_008461309.1 (PREDICTED: uncharacterized protein LOC103499936 [Cucumis melo] >KAA0058619.1 DUF1092 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 724.9 bits (1870), Expect = 3.5e-205
Identity = 360/379 (94.99%), Postives = 369/379 (97.36%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFRKSKHSSLPFSQSIKTANRFSASGRINQQPLRRFRSNSVSE 60
           MATLSFNPTRIRTL GLHF KSK  S PFSQSIKTANRFSA+GRI+QQPLRRF+SNSVSE
Sbjct: 1   MATLSFNPTRIRTLVGLHFTKSKPISSPFSQSIKTANRFSANGRISQQPLRRFQSNSVSE 60

Query: 61  SSVSVPEEVELKEDVDDPTLELAYLDPETDPESITEWELDFCSRPILDIRGKKVWELVAC 120
           SSVSVPEEVEL ED DDPTLE+AYLD ETDPESITEWELDFCSRPILDIRGKKVWELV C
Sbjct: 61  SSVSVPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC 120

Query: 121 DNSLSLQYTKYFPNNVINSITLRDAISAITEELGVPLPEKIRFFRSQMQTIITKACTELG 180
           DNSLSLQYTKYFPNNVINSITLRDAIS+I EELGVPLPEKIRFFRSQMQTIITKACTELG
Sbjct: 121 DNSLSLQYTKYFPNNVINSITLRDAISSIAEELGVPLPEKIRFFRSQMQTIITKACTELG 180

Query: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKWAFV 240
           IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGE+WAFV
Sbjct: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV 240

Query: 241 QLPFSAVQEEVSNLKETFMFGSSLDLDLLGIEIDEKTMIPGLSVATSRAQPLAAWMNGME 300
           QLPFSAVQEE+SNLKETFMFGSSLDLDLLGI+ID+KTMIPGLSVATSRAQPLAAWMNGME
Sbjct: 241 QLPFSAVQEEISNLKETFMFGSSLDLDLLGIDIDDKTMIPGLSVATSRAQPLAAWMNGME 300

Query: 301 VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL 360
           VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL
Sbjct: 301 VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL 360

Query: 361 DSEDCVGFWLLLDLPPPPV 380
           DSEDCVGFWLLLDLPPPPV
Sbjct: 361 DSEDCVGFWLLLDLPPPPV 379

[Close]

BLAST of Lsi02G025640 vs. NCBI nr
Match: TYK10428.1 (DUF1092 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 721.8 bits (1862), Expect = 3.0e-204
Identity = 358/379 (94.46%), Postives = 368/379 (97.10%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFRKSKHSSLPFSQSIKTANRFSASGRINQQPLRRFRSNSVSE 60
           MATLSFNPTRIRTL GLHF KSK  S PFSQSIKTANRFSA+GRI+QQPLRRF+SNSVSE
Sbjct: 1   MATLSFNPTRIRTLVGLHFTKSKPISSPFSQSIKTANRFSANGRISQQPLRRFQSNSVSE 60

Query: 61  SSVSVPEEVELKEDVDDPTLELAYLDPETDPESITEWELDFCSRPILDIRGKKVWELVAC 120
           SSVSVPEEVEL ED DDPTLE+AYLD ETDPESITEWELDFCSRPILDIRGKKVWELV C
Sbjct: 61  SSVSVPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC 120

Query: 121 DNSLSLQYTKYFPNNVINSITLRDAISAITEELGVPLPEKIRFFRSQMQTIITKACTELG 180
           DNSL+LQYTKYFPNNVINSITLRDAIS+I EELGVPLPEK RFFRSQMQTIITKACTELG
Sbjct: 121 DNSLALQYTKYFPNNVINSITLRDAISSIAEELGVPLPEKTRFFRSQMQTIITKACTELG 180

Query: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKWAFV 240
           IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGE+WAFV
Sbjct: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV 240

Query: 241 QLPFSAVQEEVSNLKETFMFGSSLDLDLLGIEIDEKTMIPGLSVATSRAQPLAAWMNGME 300
           QLPFSAVQEE+SNLKETFMFGSSLDLDLLGI+ID+KTMIPGLSVATSRAQPLAAWMNGME
Sbjct: 241 QLPFSAVQEEISNLKETFMFGSSLDLDLLGIDIDDKTMIPGLSVATSRAQPLAAWMNGME 300

Query: 301 VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL 360
           VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL
Sbjct: 301 VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL 360

Query: 361 DSEDCVGFWLLLDLPPPPV 380
           DSEDCVGFWLLLDLPPPPV
Sbjct: 361 DSEDCVGFWLLLDLPPPPV 379

[Close]

BLAST of Lsi02G025640 vs. NCBI nr
Match: XP_004135937.1 (protein TAB2 homolog, chloroplastic [Cucumis sativus] >KGN45119.1 hypothetical protein Csa_016475 [Cucumis sativus])

HSP 1 Score: 716.5 bits (1848), Expect = 1.2e-202
Identity = 355/379 (93.67%), Postives = 366/379 (96.57%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFRKSKHSSLPFSQSIKTANRFSASGRINQQPLRRFRSNSVSE 60
           MATLSFNPTRIRTLGGLHF KSK    PFSQSIKTANRFSA+GRI+QQPL RFRSNSVSE
Sbjct: 1   MATLSFNPTRIRTLGGLHFTKSKPIYSPFSQSIKTANRFSANGRISQQPLPRFRSNSVSE 60

Query: 61  SSVSVPEEVELKEDVDDPTLELAYLDPETDPESITEWELDFCSRPILDIRGKKVWELVAC 120
           SSV+ PEEVEL ED DDPTLE+AYLD ETDPESITEWELDFCSRPILDIRGKKVWELV C
Sbjct: 61  SSVTAPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC 120

Query: 121 DNSLSLQYTKYFPNNVINSITLRDAISAITEELGVPLPEKIRFFRSQMQTIITKACTELG 180
           DNSLSLQYTKYFPNNVINSITLRDA+S+I EELGVPLP+KIRFFRSQMQTIITKACTELG
Sbjct: 121 DNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTELG 180

Query: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKWAFV 240
           IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGE+WAFV
Sbjct: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV 240

Query: 241 QLPFSAVQEEVSNLKETFMFGSSLDLDLLGIEIDEKTMIPGLSVATSRAQPLAAWMNGME 300
           QLPFSAVQEE+SNLKETFMFGSSLDLDLLGIEID+KTMIPGLSVATSRAQPLAAWMNGME
Sbjct: 241 QLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNGME 300

Query: 301 VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL 360
           VYSVEADTSRA LILSVGIATRYVYATYKKTPVT+AEAEAWEAAKKACGGLHFLAIQDDL
Sbjct: 301 VYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQDDL 360

Query: 361 DSEDCVGFWLLLDLPPPPV 380
           DSEDCVGFWLLLDLPPPPV
Sbjct: 361 DSEDCVGFWLLLDLPPPPV 379

[Close]

BLAST of Lsi02G025640 vs. NCBI nr
Match: XP_022959769.1 (protein TAB2 homolog, chloroplastic [Cucurbita moschata])

HSP 1 Score: 699.9 bits (1805), Expect = 1.2e-197
Identity = 351/381 (92.13%), Postives = 361/381 (94.75%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFRKSKHSSLPFSQSIKTANRFSASGRINQQPLRRFRSNSVSE 60
           MATLSFNPTRIRT GGLH  K K  SLPFSQSIKT  RFSA  RINQQ LRRFRSNSVSE
Sbjct: 1   MATLSFNPTRIRTPGGLHLCKPKPRSLPFSQSIKTPKRFSADFRINQQLLRRFRSNSVSE 60

Query: 61  SSVSVPEEVE--LKEDVDDPTLELAYLDPETDPESITEWELDFCSRPILDIRGKKVWELV 120
           SS+SVPEEVE  + ED DDPTLELAYLD ETDPESITEWELDFCSRPILDIRGKKVWELV
Sbjct: 61  SSISVPEEVEVAVDEDEDDPTLELAYLDSETDPESITEWELDFCSRPILDIRGKKVWELV 120

Query: 121 ACDNSLSLQYTKYFPNNVINSITLRDAISAITEELGVPLPEKIRFFRSQMQTIITKACTE 180
           ACDNSLSLQYTKYFPNNVINSITLRDAIS+ITEELGVPLPEKIRFFRSQMQTIITKACTE
Sbjct: 121 ACDNSLSLQYTKYFPNNVINSITLRDAISSITEELGVPLPEKIRFFRSQMQTIITKACTE 180

Query: 181 LGIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKWA 240
           LG+KPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELP+NLFGE+WA
Sbjct: 181 LGVKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGERWA 240

Query: 241 FVQLPFSAVQEEVSNLKETFMFGSSLDLDLLGIEIDEKTMIPGLSVATSRAQPLAAWMNG 300
           FVQLPFSAVQEEVSNL  +FMFGSSLDLDLLGIEID+ TMIPGLSVA+SRAQPLAAWMNG
Sbjct: 241 FVQLPFSAVQEEVSNLNASFMFGSSLDLDLLGIEIDDNTMIPGLSVASSRAQPLAAWMNG 300

Query: 301 MEVYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQD 360
           MEVYSVEADTSRACLILSVGI+TRYVYATYKK PVTTAEAEAWEAAKKACGGLHFLAIQD
Sbjct: 301 MEVYSVEADTSRACLILSVGISTRYVYATYKKNPVTTAEAEAWEAAKKACGGLHFLAIQD 360

Query: 361 DLDSEDCVGFWLLLDLPPPPV 380
           DLDSEDCVGFWLLLDLPPPPV
Sbjct: 361 DLDSEDCVGFWLLLDLPPPPV 381

[Close]

BLAST of Lsi02G025640 vs. TAIR 10
Match: AT3G08010.1 (RNA binding )

HSP 1 Score: 558.1 bits (1437), Expect = 5.3e-159
Identity = 280/381 (73.49%), Postives = 320/381 (83.99%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFRKSKHSSLPFSQSIKTANRFSASGRINQQPLRRFRSNSVSE 60
           MATL FN  RI+T       K       F++ IKT + FS+   + +    RF S S+ E
Sbjct: 1   MATLGFNTRRIQTPSLPRIPKPS----SFTKPIKTHHLFSSETLLKR---CRFVSRSLPE 60

Query: 61  SSVSVPEEVELKEDV--DDPTLELAYLDPETDPESITEWELDFCSRPILDIRGKKVWELV 120
           SS+S+ +E E+  +V  DDPT EL+YLDPE+D +SI EWELDFCSRPILD RGKK+WELV
Sbjct: 61  SSLSITKEQEVANEVEEDDPTSELSYLDPESDADSIKEWELDFCSRPILDSRGKKIWELV 120

Query: 121 ACDNSLSLQYTKYFPNNVINSITLRDAISAITEELGVPLPEKIRFFRSQMQTIITKACTE 180
            CD SLSLQ TKYFPNNVINSITL+DAI  IT++LGVPLPEKIRFFRSQMQTIITKAC E
Sbjct: 121 VCDASLSLQVTKYFPNNVINSITLKDAIVTITQDLGVPLPEKIRFFRSQMQTIITKACKE 180

Query: 181 LGIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKWA 240
           L IK +PSKRCLSL LWL+ERY+TVYTRHPGFQKGS PLL+LDNPFPM LPENLFGEKWA
Sbjct: 181 LAIKAVPSKRCLSLFLWLQERYDTVYTRHPGFQKGSLPLLSLDNPFPMNLPENLFGEKWA 240

Query: 241 FVQLPFSAVQEEVSNLKETFMFGSSLDLDLLGIEIDEKTMIPGLSVATSRAQPLAAWMNG 300
           FVQLP+SAV+EE+S+  E F+FG+SLDLDLLGIE+DE T+IPGLSVATSRA+PLAAWMNG
Sbjct: 241 FVQLPYSAVREEISDFDEKFVFGASLDLDLLGIEVDENTLIPGLSVATSRAKPLAAWMNG 300

Query: 301 MEVYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQD 360
           +EV S+EAD+S+ CLILSVGIATRYVYATYKKTPVTT EAEAWE+AKK  GGLHFLAIQD
Sbjct: 301 LEVCSIEADSSKGCLILSVGIATRYVYATYKKTPVTTDEAEAWESAKKTSGGLHFLAIQD 360

Query: 361 DLDSEDCVGFWLLLDLPPPPV 380
           DLDS+DCVGFWLL+DLPPPPV
Sbjct: 361 DLDSDDCVGFWLLIDLPPPPV 374

The following BLAST results are available for this feature:

BLAST of Lsi02G025640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SFB3	7.4e-158	73.49	Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATAB2 PE=...	[more]
B4FTR7	1.5e-137	68.67	Protein TAB2 homolog, chloroplastic OS=Zea mays OX=4577 GN=TAB2 PE=2 SV=1	[more]
Q6K9C1	6.8e-135	67.36	Protein TAB2 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]

BLAST of Lsi02G025640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UYM5	1.7e-205	94.99	DUF1092 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S3CEE7	1.7e-205	94.99	uncharacterized protein LOC103499936 OS=Cucumis melo OX=3656 GN=LOC103499936 PE=...	[more]
A0A5D3CGT0	1.4e-204	94.46	DUF1092 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0K8A7	6.0e-203	93.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G427090 PE=4 SV=1	[more]
A0A6J1H921	5.8e-198	92.13	protein TAB2 homolog, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC11146074...	[more]

BLAST of Lsi02G025640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900264.1	4.0e-209	97.36	protein TAB2 homolog, chloroplastic [Benincasa hispida]	[more]
XP_008461309.1	3.5e-205	94.99	PREDICTED: uncharacterized protein LOC103499936 [Cucumis melo] >KAA0058619.1 DUF...	[more]
TYK10428.1	3.0e-204	94.46	DUF1092 domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_004135937.1	1.2e-202	93.67	protein TAB2 homolog, chloroplastic [Cucumis sativus] >KGN45119.1 hypothetical p...	[more]
XP_022959769.1	1.2e-197	92.13	protein TAB2 homolog, chloroplastic [Cucurbita moschata]	[more]

BLAST of Lsi02G025640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08010.1	5.3e-159	73.49	RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009472	Tab2-like	PFAM	PF06485	Tab2_like	coord: 97..371 e-value: 5.0E-89 score: 298.4
IPR009472	Tab2-like	PANTHER	PTHR34556	FAMILY NOT NAMED	coord: 1..379

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G025640.1	Lsi02G025640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding