Lsi02G025440 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G025440
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
Location	chr02: 31911899 .. 31914200 (-)
RNA-Seq Expression	Lsi02G025440
Synteny	Lsi02G025440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAATGTATGAATGATGTTTATCGAAGAGACCATTTAAAACAAAGAAGAGAACCGCAGGTTGATCTCATAAACCCTAACCCTAATTTGCAGAAGAATTTCGGACGAAGAAGATGACTCAGAAAGCAACCCTATTCAAAGGTCAACAGAAGAGGAAAACCATTCCTCCCAATCGCCATGGCAAAATACCCCAAACTCGCAAAGGTATCACTCTGTTCTTTTCCCCCCTCCCCTCTTTCATGTGTTGCATTTACTCCTAAAGATCACGATTTCTCCTCCTCCCTATTCATTCGGCGTTGTCTTTCCAGGGAAAAGATTTGTGAAGCCATCAAAGACCACCAAGGAGATGGAAACAGATCGGGTACGTGTTCTCCTTTCGTGCTTGTCCAGTAATTTATACGGAATTAGTAATCGTTAGAGTAGAAACTTATGCTGATAAGTTGTCTTGTTGCGATTGGTCGAATTTTTAATGTTTCGAATGCGATTTTCTAGCTTCCGTAGTTATACTAGATGAAGTGACCATCTATTGTAAAATACTGTTCGAAGAATTTTGGATTAAGGTGCAACTGAACTTCAGGAATCGAAATAGTTAAGGTTGTGTGTACGGTAAATGTTGCATCGCCTTGCTAGTTTGCAATTCGGGTGAACTATTTTAATCCTCCATTGTTTTGGTTAGCTGAGAACAGTTCTGAATTTCCTTTGCCTTTTCATTGATGAGAATGGATTTTGTGCATGATTCTTAAGTCATCTTCTCATGGCTGAATTTGGTAGTTGATAGTCAGTTTATTTCAAATTCCACTTTGACATCATTGTTTGAGATTGTAACATGAATGTCCGACGTTTTTGTTTCTACTTTTTCTGCATGTATGCATTCAGGCATTTAATATTGGCCGTGATTAGTATCTTCTCTTTGACTGTGTTGGAGTAGTCGTTGGTGTGAAACTTCTATTGGCGAATGAAAATTTGAAAAGTTTACAAAAAGGGAAAGGCAACTACTCAAACTTCATCTCTTGTTAAATCACTCAACTTCACTCTCTAAGAATATGCATCTGTAGCAATTTTCACCATAAAAATCTACTAGAAATCCATCCGACCAATTCTTGTCTGCACTGCATCTCAATGCAAGGATTACTTGAATGATGAGAGGCAGTTTCCTCCTTTTTTTTAGGAGTGGTCTCTTGTGCGAATATATGAAACATTGTGCAAGGACAAGAGAGGAGTATTTTTGGGTTTGAATAAATTATCTTCTAAACTATGATATGGTTGGCAGACTGAGATTCCATACAGTAGAAATGTATTTAGGCTCTTGATTTGGAAGGAGTCATTTTTCTATATGCATTTGAAATTTCCTTAGTATGAACTTGTTTTTGCTTTTATCTGTTATTGGGACATTAGCCGAAGTTCCAAACCTATACTTCCATAACCTTTTTATTTATCAATAAGACTCTATCTATGAGTATAAGCATGCCAAACATTGCTCTTGTTGTCATGTTTGTGTTCACCTTTAATTTCCCTTGAATCTTTCTTTGTGTAAGGCTCCTCCTTTCAAAAGCAAGGGTAAATTTCCTTTTCGCAACTCCTTGGTTTGTCTCCCCATCTTCAAACTAGTCATGCTAATGGAAGGTTTTATTTCTTATCATACAAAGTTCTTTTTCTGTTTTAAAGTTGAAACTAGTATTGAATGGCTGATAATTGTTCCTGTATTTGCATAATGCCATAATGTTTGGGTATGAATTGTTTTTTGTTGTTGGAAATGAATAGAATGTGCTATCTTAGTGGTTGTATAGGACCCATTATGTATCCTGTTCTATATGTAATGGAGTCACAAGATTTATACTGCTTTTACCCTTTTTCCCGTGGAGAATTTACAGACTTCATGAACTTTTTCTCCATTCCTGATAAATTTGACATTCTGGGGAAAAAAACAACAGGAAGTGAGCAAGTTCATAAATTACTGCAACGAAACAAAGGCGGCTACTTTAGCAAACAAGGAAGGTGGGCAGCTGAGTATAGTGAAAACTCCGGCGGATGCTGGTAATAGTAATGCAAAGAAAGAGTAGTGAAGGATTCAGACTTGTTACAATATTGTGAAATTATTTGTGATGTTATTTCTTTCCCTTTTCTTTTTCCATCTATTCATCCACCCCGTTGAGAAGGTGAAATGGATGTATTGACGTCTTCTAACGCAGTTCTCAATTTTGTTAGGAGTAAATCTGTTACTACTACATTTATATATGATATATTTTTTTTTTCACTTTTGTAAGATCAGCTTATGCAAAAATCAAGAAAATAATCAAATTAC

mRNA sequence

AAAAAATGTATGAATGATGTTTATCGAAGAGACCATTTAAAACAAAGAAGAGAACCGCAGGTTGATCTCATAAACCCTAACCCTAATTTGCAGAAGAATTTCGGACGAAGAAGATGACTCAGAAAGCAACCCTATTCAAAGGTCAACAGAAGAGGAAAACCATTCCTCCCAATCGCCATGGCAAAATACCCCAAACTCGCAAAGGGAAAAGATTTGTGAAGCCATCAAAGACCACCAAGGAGATGGAAACAGATCGGGAAGTGAGCAAGTTCATAAATTACTGCAACGAAACAAAGGCGGCTACTTTAGCAAACAAGGAAGGTGGGCAGCTGAGTATAGTGAAAACTCCGGCGGATGCTGGTAATAGTAATGCAAAGAAAGAGTAGTGAAGGATTCAGACTTGTTACAATATTGTGAAATTATTTGTGATGTTATTTCTTTCCCTTTTCTTTTTCCATCTATTCATCCACCCCGTTGAGAAGGTGAAATGGATGTATTGACGTCTTCTAACGCAGTTCTCAATTTTGTTAGGAGTAAATCTGTTACTACTACATTTATATATGATATATTTTTTTTTTCACTTTTGTAAGATCAGCTTATGCAAAAATCAAGAAAATAATCAAATTAC

Coding sequence (CDS)

ATGACTCAGAAAGCAACCCTATTCAAAGGTCAACAGAAGAGGAAAACCATTCCTCCCAATCGCCATGGCAAAATACCCCAAACTCGCAAAGGGAAAAGATTTGTGAAGCCATCAAAGACCACCAAGGAGATGGAAACAGATCGGGAAGTGAGCAAGTTCATAAATTACTGCAACGAAACAAAGGCGGCTACTTTAGCAAACAAGGAAGGTGGGCAGCTGAGTATAGTGAAAACTCCGGCGGATGCTGGTAATAGTAATGCAAAGAAAGAGTAG

Protein sequence

MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNETKAATLANKEGGQLSIVKTPADAGNSNAKKE

Homology

[Close]

BLAST of Lsi02G025440 vs. ExPASy TrEMBL
Match: A0A5A7UV30 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00290 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.9e-38
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60
          MTQKA LFKG+QKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET
Sbjct: 1  MTQKANLFKGKQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPADAGNSNAKKE 91
          KAATLANKEGGQLSIVKTPA+A NSNAKKE
Sbjct: 61 KAATLANKEGGQLSIVKTPANADNSNAKKE 90

[Close]

BLAST of Lsi02G025440 vs. ExPASy TrEMBL
Match: A0A1S3CE62 (uncharacterized protein LOC103499958 OS=Cucumis melo OX=3656 GN=LOC103499958 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.9e-38
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60
          MTQKA LFKG+QKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET
Sbjct: 1  MTQKANLFKGKQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPADAGNSNAKKE 91
          KAATLANKEGGQLSIVKTPA+A NSNAKKE
Sbjct: 61 KAATLANKEGGQLSIVKTPANADNSNAKKE 90

[Close]

BLAST of Lsi02G025440 vs. ExPASy TrEMBL
Match: A0A0A0K6H9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420860 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.4e-38
Identity = 85/90 (94.44%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60
          MTQKA LFKG+QK KTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET
Sbjct: 1  MTQKANLFKGKQKTKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPADAGNSNAKKE 91
          KAATLANKEGGQLSIVKTPA+A NSNAKKE
Sbjct: 61 KAATLANKEGGQLSIVKTPANADNSNAKKE 90

[Close]

BLAST of Lsi02G025440 vs. ExPASy TrEMBL
Match: A0A6J1CV79 (uncharacterized protein LOC111014568 OS=Momordica charantia OX=3673 GN=LOC111014568 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36
Identity = 82/90 (91.11%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60
          MTQKA  FKGQQKRKTIPPNRHGK+PQTRKGKRFVKPSK TKEMETDRE+SKFINYCNET
Sbjct: 1  MTQKANQFKGQQKRKTIPPNRHGKVPQTRKGKRFVKPSKITKEMETDRELSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPADAGNSNAKKE 91
          KAATLANKEGGQLSIVK P DAGNS+AKKE
Sbjct: 61 KAATLANKEGGQLSIVKAPLDAGNSSAKKE 90

[Close]

BLAST of Lsi02G025440 vs. ExPASy TrEMBL
Match: A0A6J1JNC0 (uncharacterized protein LOC111488438 OS=Cucurbita maxima OX=3661 GN=LOC111488438 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.7e-36
Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60
          MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKR VKPSKTTKEMETDRE+SKFINYCNET
Sbjct: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPAD-AGNSN--AKK 90
          KAATLANKEGGQLSIVKTP+D AGNSN  AKK
Sbjct: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 92

[Close]

BLAST of Lsi02G025440 vs. NCBI nr
Match: XP_038897231.1 (uncharacterized protein LOC120085359 [Benincasa hispida])

HSP 1 Score: 171.4 bits (433), Expect = 3.5e-39
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60
          MTQKA LFKGQQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET
Sbjct: 1  MTQKANLFKGQQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPADAGNSNAKKE 91
          KAATLANKEGGQLSIVKTP+D GNSNAKKE
Sbjct: 61 KAATLANKEGGQLSIVKTPSDTGNSNAKKE 90

[Close]

BLAST of Lsi02G025440 vs. NCBI nr
Match: XP_008461352.1 (PREDICTED: uncharacterized protein LOC103499958 [Cucumis melo] >KAA0058587.1 uncharacterized protein E6C27_scaffold339G00540 [Cucumis melo var. makuwa] >TYK10387.1 uncharacterized protein E5676_scaffold459G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 3.9e-38
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60
          MTQKA LFKG+QKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET
Sbjct: 1  MTQKANLFKGKQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPADAGNSNAKKE 91
          KAATLANKEGGQLSIVKTPA+A NSNAKKE
Sbjct: 61 KAATLANKEGGQLSIVKTPANADNSNAKKE 90

[Close]

BLAST of Lsi02G025440 vs. NCBI nr
Match: XP_004135948.1 (uncharacterized protein LOC101210742 [Cucumis sativus] >KGN45093.1 hypothetical protein Csa_016027 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 1.9e-37
Identity = 85/90 (94.44%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60
          MTQKA LFKG+QK KTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET
Sbjct: 1  MTQKANLFKGKQKTKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPADAGNSNAKKE 91
          KAATLANKEGGQLSIVKTPA+A NSNAKKE
Sbjct: 61 KAATLANKEGGQLSIVKTPANADNSNAKKE 90

[Close]

BLAST of Lsi02G025440 vs. NCBI nr
Match: XP_022145051.1 (uncharacterized protein LOC111014568 [Momordica charantia])

HSP 1 Score: 162.2 bits (409), Expect = 2.1e-36
Identity = 82/90 (91.11%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60
          MTQKA  FKGQQKRKTIPPNRHGK+PQTRKGKRFVKPSK TKEMETDRE+SKFINYCNET
Sbjct: 1  MTQKANQFKGQQKRKTIPPNRHGKVPQTRKGKRFVKPSKITKEMETDRELSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPADAGNSNAKKE 91
          KAATLANKEGGQLSIVK P DAGNS+AKKE
Sbjct: 61 KAATLANKEGGQLSIVKAPLDAGNSSAKKE 90

[Close]

BLAST of Lsi02G025440 vs. NCBI nr
Match: KAG6575705.1 (hypothetical protein SDJN03_26344, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.5 bits (402), Expect = 1.4e-35
Identity = 84/92 (91.30%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60
          MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKR VKPSKTTKEMETDRE+SKFINYCNET
Sbjct: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPADAG---NSNAKK 90
          KAATLANKEGGQLSIVKTP+DAG   N+ AKK
Sbjct: 61 KAATLANKEGGQLSIVKTPSDAGGNSNNAAKK 92

[Close]

BLAST of Lsi02G025440 vs. TAIR 10
Match: AT3G52040.1 (unknown protein; Has 37 Blast hits to 37 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-25
Identity = 57/77 (74.03%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60
          MTQK+  FKGQQKRKTI PNRHGK  QTRKGKR VKP+K TKEM+TDRE++KFIN+CNE 
Sbjct: 1  MTQKSNQFKGQQKRKTIAPNRHGKSIQTRKGKRNVKPTKMTKEMDTDRELTKFINHCNEV 60

Query: 61 KAATLANKEGGQLSIVK 78
          KA   A KEGGQL+I+K
Sbjct: 61 KATNAACKEGGQLNIIK 77

The following BLAST results are available for this feature:

BLAST of Lsi02G025440 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G025440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UV30	1.9e-38	95.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CE62	1.9e-38	95.56	uncharacterized protein LOC103499958 OS=Cucumis melo OX=3656 GN=LOC103499958 PE=...	[more]
A0A0A0K6H9	9.4e-38	94.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420860 PE=4 SV=1	[more]
A0A6J1CV79	1.0e-36	91.11	uncharacterized protein LOC111014568 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1JNC0	6.7e-36	93.48	uncharacterized protein LOC111488438 OS=Cucurbita maxima OX=3661 GN=LOC111488438...	[more]

BLAST of Lsi02G025440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897231.1	3.5e-39	96.67	uncharacterized protein LOC120085359 [Benincasa hispida]	[more]
XP_008461352.1	3.9e-38	95.56	PREDICTED: uncharacterized protein LOC103499958 [Cucumis melo] >KAA0058587.1 unc...	[more]
XP_004135948.1	1.9e-37	94.44	uncharacterized protein LOC101210742 [Cucumis sativus] >KGN45093.1 hypothetical ...	[more]
XP_022145051.1	2.1e-36	91.11	uncharacterized protein LOC111014568 [Momordica charantia]	[more]
KAG6575705.1	1.4e-35	91.30	hypothetical protein SDJN03_26344, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi02G025440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52040.1	1.4e-25	74.03	unknown protein; Has 37 Blast hits to 37 proteins in 15 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019034	Uncharacterised protein family UPF0390	PFAM	PF09495	DUF2462	coord: 1..79 e-value: 2.2E-7 score: 31.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..36
None	No IPR available	PANTHER	PTHR36769	2,3-BISPHOSPHOGLYCERATE-DEPENDENT PHOSPHOGLYCERATE MUTASE	coord: 1..88
None	No IPR available	PANTHER	PTHR36769:SF1	2,3-BISPHOSPHOGLYCERATE-DEPENDENT PHOSPHOGLYCERATE MUTASE	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G025440.1	Lsi02G025440.1	mRNA