Lsi02G024660 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G024660
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr02: 31152883 .. 31157817 (-)
RNA-Seq Expression	Lsi02G024660
Synteny	Lsi02G024660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAGTTAGTTGATTATAAATTGCTGATGGGACCCAAGAAGTTTCCACAAAGCAAGAAAAAGCCTACTCTTTCTATCCTTTGCCTAGCCTTCCCAATTTAAAGAAACTGCCACCAGATAATACAAAAGTGAAAGAAAATTTCACTATTCACAGGAGCTCATACTTCCAAAATGAACCCCTAGCTAATCAAGAAACAACCCAAAAGCAAAATTTATAAACTATCAACTTATTTCAAAAATTAATAATAATAACTACCAAGTCTCAAAACATAATTCAATGACTTAATTTAAATCTTTCTTCAATCCCTAAACTTCAATTCTTAAATTATTTTAGTACTTTTTTTATAAGAATTATTTCAGCACTTCTACTTCTGTATATTTTGTTCCTCACACTTTCATAATACTTATAGCCTAGTTTCCAGTCATTTAGTACATGTAGCATAGATTTTAAGTCACTTATTTTCAATTTCAAACTCAAAACATAAAACTTAGGTCACAAATTTATCCAAACATCTTGCAAGATTTCTAACCTATTTTTTTGCAGATATCACACAAGATTTCTAAAATTTTACGCAAGATTTCTGACCTATTTTTTGCAGATATCACACAAGATTTCTAAAATTTTACTTCTCTATAAGTTATAAGTTTAAATTATCACCCTATATGTCAACTTCAACATAGTCCAACTAGTTAAAACATATACCTTCAATCTATAGGTGAGAAGTTTAAATCTCCAAATAATAATAATAATAACTCAGATTCTACAAAAAGAACGTGGATGTGTAAAACTTAAGTCATAAATTCATGCAAATATCATGGCACGACTAACATGGAAATAGATTTGTGTAAATTTATTAGAACAAAATAAAATATAAAAAAAAGGGTTTCTAAACTCAAATCACAAGCCAAGAAGAGTTTTCAAGGATAGCATACGCATGCGAAAATCAAAATGAAAGCCGAACCTATCTGAAACCTGGAATGATAAATCATTACCGTTACCATTAAGCATGCAAAGTAAATAGCTTGCAAACCTGACTGATTGGAGAAAAGGATTCAAAGGTTAAACCGCAGCAGATTATCAACTGAGGTGATTCCCCATGCCATCTAAAAGACCTGGAATAATACAATCAACTTCATTTGTTTAAGCAAGACGGAAATATACAAGATTTAGACCAAAATAACTTTCCTCATCATTAAAATTATTATGCAAAATCTAATCTCACTTCTTAACTGAGATTCCCTTTTTCCTTTTATTTGGTGAGTTGCTATTTCTACTGCTAATACAGTCTGAACAAAACCAATCACCCTCTGGAATATCCAGCAATGGAGGATTGCAGCAATCTGTATGCATGCCAATTCCACAACCATTTGAACCATCTTCATTGCCACAAATGAGCATCACTTCACCTCTATCGCGAGACCCGCACTCTTGGCAGGCAATATCGTTATCAGAACAATCATCCTGTGGGCTTGCGTCTTCGACAACTTCTTCTGCTCTACTCCGAAGGTTGCTAAAAGATTTTTCCGCCCATGTATGAGTATTGTACAAAACATGTTTATCAAGAGGATAACCAGGTTTGCAAACATACTCAACCAAGTAATCAGCCGCTACACAGGGTATCTCATCATTTAAGAACTCTTGGACCCACGAATCAGCACGTGGCATGCCAGTGCCAACAACAGCAAAATCAACTCCAGATTTAAGGAATTTAGTATAAGGTGGAGATGTGGCTAGTATTGTCCCATCTCCAGCCTTAACAGCACGCTTGAGAGTATCCTGTTTCATGGTTAGCAGATATGATGTATATGTCAAAAAAAACCAATATCTTCACAAGTAATGTTTGAAAGGAGCATTACAGCTTAAGTGGCTGTAATGTACGATAGCATACGTACCAGAGGTGGAGCAATACATTCACCATATATGATAATACGCATTCCATAGAAGGCACCATGACCTGTTTTCACCCTCAAGAGCCGCCACTTCCTAGGAGCTTCCAAATTGATTGCACCGTCTTCAGTGAGGCCGTTTTTGTACCATTCATAAGGCTCCTCCTTCAAGAACTTTCCAGCCTGACTACTATCTGCTAGATAATCAGATTTGAGAATCCACCTGCATCGTGAAACCTTGTGTTTTAGATCTTTTATGTAGATTAAGGACATGTTTGGATTGACTAGAGAAAAAAAAATATTTTTATTTAAACTCTTTTAATAAAATTTAGTTAAAATACACTTCAAAAACTATTTTGAATGGTTGTCAAACACTTCAATTGCTTTCAAAATGACTTATTTTCAAAATTAAATACTTGAAAGTTAATCCAAACGCACCCTAAGTTTTTAAAAAGTAACATACAACAATTAACTTCTAAGATTCTTACGCGAAAAGATAATATAAATAATACATCCATCACTTATTTACTTGATATTTAAATTTCATGAAATCTTAAAAAAACACAATTGACGAACGAAACGTGTTACCTTCCAGATGCTGCAGCCGAAAAAAACTTTTCAGTTCTACGGACTGGATTGGGGGCTATGAAATGTGTAGCCTGATATGACCATTGATGAGAATCTCTGCAAACCCTTCCTTTCAAATGCTTGATTACTTTCTGAAACTCCTTCCTTTCAAGACGATGTCCACTCAAGATAAAACATACAGGTTCAGGCTTTACTTCTCTCAAAACTTCTTCAACTTCCATTGAAGAATTGGCACTGATCTCTGAAGATTTTTTGTTGGCCTTTCTTTGCTTTGCATTAGACTTGACCATAGTTTTATCTAAACGATGCTTGCCAAGATCACTAGTTTTGTCACCAACATCACATGGTACATTTTCCTTCTCTGAATTATAATCGGGCATGGTTTGGACTTCAGTATTAGGCTTTGCAGCAACCAACTGGGGTTTCTTCCCAATCTTCTCATTTTTCTTACGAGTGGGTGCTTTACCAACCTTACCTTGTTTAGATTTCATTTTAGAAGAGTCTATCAACATTGTTACTTCCGTTGGACCTCTATCCCCCACATTCAATTTCAATTTCTCATCTTCTACTCTTAATTCATCCAGTTGTACATTCCCGATGGAAACAGGTTCTCTGGGTTCAATCACTTCTTTTAATGTAATTGAAGGAATCGTTTCATCAAGCACACTAGCGCTATCGTTACATTTCACTCCAGTTGTGGTCTCTTTTGCCAGCTTATCCTCATCACTTATTAGCTGAACTTCCTTAAAATTCTCCTTATCCATCATTTGCTGCTCAAAGTCTTCTTTATTTTCTGGATCAGTAGTTTTATCATCCTCATCCATGGCTTCATATTTATGAAAAAAATCCCCCATATCTGTTGTCTCCACAACCTTTTTCACTCCAATACTGACATCTTCAGGTGATGAGCTGAAGAGTTTTTCACCGTTCACACAAGGTGAAGAAACTGAATCATTCAAGGAAGTGGTTTTATTTGAGAGAAGAGAACCCTTGCGACTGGCACTGCCCAACTTCGGTCTAGAACCCAAGCTCTTTTTGGCAAACATCTTGATTCTTTGATGTTTGGAATGCAAGTCATTATTTTGAACAGAAGAATTCAAATTAGTCGGAGAAGCTGATTTCGTAGCCCTTGTACCTCTATCACTTTCAGATGTAGCCAAAACACCAATCTGCTGCCTATCTGCTTCTTTAGGTTTTCCAACCACATCTCCAGAAATCCCGTAATCATGATTTATCTTGTCAGACTTGTCAGGTGATGTGTCTTTTCCTGATATCTGGCAGGGTGTTCGAGGAGTCTTCTTGCTGCTCTCAGCAACATCTTCAGTTGGAGCGCGAACATTGTTGCTGAAAGGTAGGTCGCACGTCAATGGTTTCTTAATAGAACTAGAGCTGTTGGTAATAGCCCTACTATGCTGCAAGTTCTTAGCACGACACGCGCCAGAATCATTGTTATTAAAAGAAACACTTCTCATTTCCAATCCTAAAATTTTTTCGTCTACGGAGGGGTTATTCAAGGTGCGTGATTTTGTGTTCTCACTCATTGTATGAGATCGAGAGACGTCATAAGATACATCTGAAATGCTTTTCAGAGGCAATCTAGCATTTGAATCTCCTGTACCAAATAAATCAGTTCCCCTTGAAGAATTTGGTTCATGGCCAGAGAAAGTAGCATACGTTACTTGCTCCATCTTTTCTAAAGATGCAACACCAATAGTATCTTTCATTTCACCTGTTGCCATTTTACATGAGACATCAGCTCTGTCCAATCTTTCTCCGGAAAACAGTGGAAGTGGCGACTTCAATGGGGTTCTCCTAGAGTAACTGGTAGCACACAGCTGCGGGGACCTTGCTGCATTTGATGGACTTGTCACTGCCTCATTTTTCACTTTCTGCTTCTCAGATTCAGAAGTTTTCATATGCATGTCAGATGGCACAGAAGCCCAAGGAGTACTAAAAACATCATCTTCCTGACAAATAGGTCCCCCAACAGCATCATGTTTATCAGAATTTCCAGAAGGAATAAATCTAGTGTTGGTAATAGGAACTGTCAACATGCTCTTAGTATCAGCAATGTTTGTGCGGCCATCCAATGTCTTTGAAGCTGGCAGTGTATTAGATATTTCACTGGTTGAATGCAAACCAAATTTCATGTCGTCGGGACTCTTGGTGTTTTTCCTTGCAAAATGTTTGGTGATGCTACTGTTAGACTCCTCTTCAGAATCCTTAGCCTCAGCTTCAAGCATCTCCATGTCATATCCACTGTAGAGAAATGCAAAGAGAATTTGAGAACATGGGTGGATATATTCAGAAAACATGAATTTAATCAGCAGGCTAACATGCAGAAGAACATAGTACAAGTATTTGGAGGGACACACCCAGCATTGGTTATTCAAAATGGCAATGCCATAAACAAACGGAAGCATACATCAGTTAGCATCCCGATGAGCTACATCTAG

mRNA sequence

ATGGGAAGATCTGAACAAAACCAATCACCCTCTGGAATATCCAGCAATGGAGGATTGCAGCAATCTGTATGCATGCCAATTCCACAACCATTTGAACCATCTTCATTGCCACAAATGAGCATCACTTCACCTCTATCGCGAGACCCGCACTCTTGGCAGGCAATATCGTTATCAGAACAATCATCCTGTGGGCTTGCGTCTTCGACAACTTCTTCTGCTCTACTCCGAAGGTTGCTAAAAGATTTTTCCGCCCATGTTTTCCAACCACATCTCCAGAAATCCCGGTGTTCGAGGAGTCTTCTTGCTGCTCTCAGCAACATCTTCAGTTGGAGCGCGAACATTGTTGCTGAAAGAGGCAATCTAGCATTTGAATCTCCTGTACCAAATAAATCAGTTCCCCTTGAAGAATTTGGTTCATGGCCAGAGAAAGTAGCATACGTTACTTGCTCCATCTTTTCTAAAGATGCAACACCAATAGTATCTTTCATTTCACCTGTTGCCATTTTACATGAGACATCAGCTCTGTCCAATCTTTCTCCGGAAAACAGTGGAAGTGGCGACTTCAATGGGGTTCTCCTAGAACTCCTCTTCAGAATCCTTAGCCTCAGCTTCAAGCATCTCCATGTCATATCCACTGTAGAGAAATGCAAAGAGAATTTGAGAACATGGGTGGATATATTCAGAAAACATGAATTTAATCAGCAGGCTAACATGCAGAAGAACATAGTACAAGTATTTGGAGGGACACACCCAGCATTGGTTATTCAAAATGGCAATGCCATAAACAAACGGAAGCATACATCAGTTAGCATCCCGATGAGCTACATCTAG

Coding sequence (CDS)

ATGGGAAGATCTGAACAAAACCAATCACCCTCTGGAATATCCAGCAATGGAGGATTGCAGCAATCTGTATGCATGCCAATTCCACAACCATTTGAACCATCTTCATTGCCACAAATGAGCATCACTTCACCTCTATCGCGAGACCCGCACTCTTGGCAGGCAATATCGTTATCAGAACAATCATCCTGTGGGCTTGCGTCTTCGACAACTTCTTCTGCTCTACTCCGAAGGTTGCTAAAAGATTTTTCCGCCCATGTTTTCCAACCACATCTCCAGAAATCCCGGTGTTCGAGGAGTCTTCTTGCTGCTCTCAGCAACATCTTCAGTTGGAGCGCGAACATTGTTGCTGAAAGAGGCAATCTAGCATTTGAATCTCCTGTACCAAATAAATCAGTTCCCCTTGAAGAATTTGGTTCATGGCCAGAGAAAGTAGCATACGTTACTTGCTCCATCTTTTCTAAAGATGCAACACCAATAGTATCTTTCATTTCACCTGTTGCCATTTTACATGAGACATCAGCTCTGTCCAATCTTTCTCCGGAAAACAGTGGAAGTGGCGACTTCAATGGGGTTCTCCTAGAACTCCTCTTCAGAATCCTTAGCCTCAGCTTCAAGCATCTCCATGTCATATCCACTGTAGAGAAATGCAAAGAGAATTTGAGAACATGGGTGGATATATTCAGAAAACATGAATTTAATCAGCAGGCTAACATGCAGAAGAACATAGTACAAGTATTTGGAGGGACACACCCAGCATTGGTTATTCAAAATGGCAATGCCATAAACAAACGGAAGCATACATCAGTTAGCATCCCGATGAGCTACATCTAG

Protein sequence

MGRSEQNQSPSGISSNGGLQQSVCMPIPQPFEPSSLPQMSITSPLSRDPHSWQAISLSEQSSCGLASSTTSSALLRRLLKDFSAHVFQPHLQKSRCSRSLLAALSNIFSWSANIVAERGNLAFESPVPNKSVPLEEFGSWPEKVAYVTCSIFSKDATPIVSFISPVAILHETSALSNLSPENSGSGDFNGVLLELLFRILSLSFKHLHVISTVEKCKENLRTWVDIFRKHEFNQQANMQKNIVQVFGGTHPALVIQNGNAINKRKHTSVSIPMSYI

Homology

[Close]

BLAST of Lsi02G024660 vs. ExPASy TrEMBL
Match: A0A0A9TJP2 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-07
Identity = 39/73 (53.42%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 1  MGRSEQNQSPSGISSNGGLQQSVCMPIPQPFEPSSLPQMSITSPLSRDPHSWQAISLSEQ 60
          M    QNQSPSG +  GG QQS+C+PIPQP  PSS PQ+SITSP S  PH+ Q  S    
Sbjct: 1  MSHLGQNQSPSGTACRGGSQQSMCVPIPQPATPSSSPQISITSPRSLRPHTEQLRSTGLS 60

Query: 61 SSCGLASSTTSSA 74
          SS     S+ S A
Sbjct: 61 SSLSSDGSSLSMA 73

[Close]

BLAST of Lsi02G024660 vs. ExPASy TrEMBL
Match: A0A0A9Q5J6 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-05
Identity = 36/73 (49.32%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 1  MGRSEQNQSPSGISSNGGLQQSVCMPIPQPFEPSSLPQMSITSPLSRDPHSWQAISLSEQ 60
          M    QNQSPSG +  GG QQ +C+PIPQP  PSS P+++ITSP S  PH+ Q  S    
Sbjct: 1  MSHLGQNQSPSGTACRGGSQQLMCVPIPQPATPSSSPEITITSPRSLRPHTEQLRSTGLS 60

Query: 61 SSCGLASSTTSSA 74
          SS     S+ S A
Sbjct: 61 SSLSSDGSSLSMA 73

The following BLAST results are available for this feature:

BLAST of Lsi02G024660 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G024660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A9TJP2	6.9e-07	53.42	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A0A9Q5J6	1.7e-05	49.32	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of Lsi02G024660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of Lsi02G024660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G024660.1	Lsi02G024660.1	mRNA