Lsi02G024610 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G024610
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	transcription initiation factor TFIID subunit 13
Location	chr02: 31114047 .. 31116436 (-)
RNA-Seq Expression	Lsi02G024610
Synteny	Lsi02G024610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAAATAAAAACAAACCGAACTCAACATACTTTCATCGTCCTTTCTTTCTAATCAGACCCCTTTGCGGAAGAACACTGTAAGCTCCGGCGAACCTCCTGCGGTGACTCCGATTCTCCATCTCCGGTGAGAATCATGGCCTATTCTTAGCAGTTTCTAAATACTCCCTTTCTTTCTCTTCTCTGGCGTGTATTTTATCCGTAGATTATACGACTAATTGGACTCGATTAGCTTAAATTTACTTCACTTTTCTGTGGCTCCACTTTGAAATTCCCCCCGCTTCTGTTTCAATGCTTGCTTGATATTGTAACTTTTAATTAGGGTTTATCTTCTTTCCATCGAGTTAGTGATAGAGTTCCCTTTCTGGGAATGTTTCTATTTAGTGGTTCGATGATTCTTGATGTTTTGATATTGTTTAATTTGATTGTTTTACCTTCACGTTTAGATTATTTTCGGCTTGATTATCGTGGGTAGATAGTGAAGATGAACAATCCATCTGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCATCCCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATGTAACAGATTTCTCTTTTCTTCCTTTTATCTTCTTCATCCCAAGTTTGTATGTGAAAATGTAATTATGTGATCCTCTCTCTTTTCAGTGCAGCACATGATGTATGGTTTTGGAGATGACCCCAATGTAAGTGAAATTATCATATATTAGTATAGAAAGGAAGCTTATGTATGTTTCCATGGAAATTCAAACCTGAAATTTTCTTTTTGATACTCTCTGGTTTTTTCTGATCTTTATCTTCCATGGCTTTATATCTTTCGATGAAATCTTCTGTAGAGCTTAGAAATTGAGTGAAGTCTAGTTAGATAAAATTTTGATTGTTTAGCTCTTCATGGGAGTCTAGGAAAGGTGGATGGGGATTCTTTGAAGATATTTGCAATGATCAGTGCAAAGATCTTTTGATCTCATAAGCTCATCATAAGAACAGACATCTCCATTATTTCTGTGTTAATTTTTAATGCAAGTTGCCACCCAAATCCTTCAGCAAAATGCTTACCTGCCTGAAGAAAATTGGAAAGAACTCATCAATATTCATTGTATTTTCTAAAATTGAGTTCAAGCTTTCCATCGTGTGAATTATAAAGAATAGAATTACGGTTTTGAAATCCTGAAGCTCTGTATAATGACTGGGTTTTACGCGTCTTGATGTTAATTAAGAGCCATGATAAGAATTTCATTGGCTGCCTCTCTTTAGTCATAATTTCTTAGCAGATCAGAAGTACAATGAGAGCAAGGAAAAAATCTAGTCTGTGTGTTCTTATCTTCATTTATGAATAAAAATATCTATTCATGAGTTTCTGCTTTGTGCATTACAGCCCCTTCCAGAGTCTGTAGCGCTTATGGAGGACATAGTTGTGGAGTACATAACTGAACTGGTAATAATTTCTGTGCAATTATTAAGTATCCCTTGCTAAACCAGTGTTGTTTAGTTAGGATTATCTGAAATATATATTCTTTATAGGTGTATAAAGCACAGGAGATTGGATCGAAGAGGGGAAAACTATCTGTGGAAGACTTTTTGTATTTAATGCGCAAGGTACATTACATAGTTTCTTTCTGTATGTTTCCATATCAATGAATGAACTTAAGTTCTCTCGTTATTTGGCTATGCAGCATGGCATCCATTATCTTAAGAAATTGACATATTAAAATTTCCATAGCTGCTTTTTTAAGCATACATTTCTTGTGTACCAGCTTTTGTTATAGATCTTCATTCCAAGTGTGATTACATAAACAGAATAGCTCCATTATTTTGATCTAAAATTTGGTGCCTCAAGCGCCCTCGGCCGCAATCGTTTAACTAAGATTAGATATCAAAACTTCTTAACCTCTATGATTTTCTACAATTTAGGATCCACGCAAACTGAACCGCTCTACCGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCTAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATCAGTAAATCATAGGAAGAAGATATTTTGGAGGTCATTTGTTGCTGCAGAAACAAAGTTCGTCTCATTATGGTTCCTTGTCATATTAAAAGTCAACCGACAGGTCTTTGAACTCTCTGTCTTTGTCAACCTTTTTCTGTAGCCCTAAGGCTCCATGGTAGACAGGGCAAAACAAAGCAATTAGCTTTAATTTGTTTTTTCTGCTTAATGGCAAACAATGTACATTAACCCCCTTCCTCCTAGCCCTGACCTACTTATAAAGGTAGGGGCTTCCTTACTGTACACACACACCCCTTTTGGAATTAATGAAATGAACACCTCTTTTAAA

mRNA sequence

AGGAAATAAAAACAAACCGAACTCAACATACTTTCATCGTCCTTTCTTTCTAATCAGACCCCTTTGCGGAAGAACACTGTAAGCTCCGGCGAACCTCCTGCGGTGACTCCGATTCTCCATCTCCGATTATTTTCGGCTTGATTATCGTGGGTAGATAGTGAAGATGAACAATCCATCTGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCATCCCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACCCCAATCCCCTTCCAGAGTCTGTAGCGCTTATGGAGGACATAGTTGTGGAGTACATAACTGAACTGGTAATAATTTCTGTGTATAAAGCACAGGAGATTGGATCGAAGAGGGGAAAACTATCTGTGGAAGACTTTTTGTATTTAATGCGCAAGGTACATTACATAGATCCACGCAAACTGAACCGCTCTACCGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCTAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATCAGTAAATCATAGGAAGAAGATATTTTGGAGGTCATTTGTTGCTGCAGAAACAAAGTTCGTCTCATTATGGTTCCTTGTCATATTAAAAGTCAACCGACAGGTCTTTGAACTCTCTGTCTTTGTCAACCTTTTTCTGTAGCCCTAAGGCTCCATGGTAGACAGGGCAAAACAAAGCAATTAGCTTTAATTTGTTTTTTCTGCTTAATGGCAAACAATGTACATTAACCCCCTTCCTCCTAGCCCTGACCTACTTATAAAGGTAGGGGCTTCCTTACTGTACACACACACCCCTTTTGGAATTAATGAAATGAACACCTCTTTTAAA

Coding sequence (CDS)

ATGAACAATCCATCTGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCATCCCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACCCCAATCCCCTTCCAGAGTCTGTAGCGCTTATGGAGGACATAGTTGTGGAGTACATAACTGAACTGGTAATAATTTCTGTGTATAAAGCACAGGAGATTGGATCGAAGAGGGGAAAACTATCTGTGGAAGACTTTTTGTATTTAATGCGCAAGGTACATTACATAGATCCACGCAAACTGAACCGCTCTACCGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCTAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATCAGTAA

Protein sequence

MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMDQ

Homology

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BLAST of Lsi02G024610 vs. ExPASy Swiss-Prot
Match: Q6NQH4 (Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana OX=3702 GN=TAF13 PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.2e-33
Identity = 82/134 (61.19%), Postives = 104/134 (77.61%), Query Frame = 0


Query: 2   NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMED 61
           N P+A +SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+ED
Sbjct: 3   NTPAAAASSSSKSKAAGTSQPQE----KRKTLFQKELQHMMYGFGDEQNPLPESVALVED 62

Query: 62  IVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEEL 121
           IVVEY+T+L     +KAQEIGSKRG+L V+DFLYL+RK    D  KLNR  ELL+M EEL
Sbjct: 63  IVVEYVTDL----THKAQEIGSKRGRLLVDDFLYLIRK----DLPKLNRCRELLAMQEEL 122

Query: 122 KQARRAFEIDEDKL 133
           KQAR+AF++DE +L
Sbjct: 123 KQARKAFDVDEKEL 124

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BLAST of Lsi02G024610 vs. ExPASy Swiss-Prot
Match: Q148M7 (Transcription initiation factor TFIID subunit 13 OS=Bos taurus OX=9913 GN=TAF13 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.4e-21
Identity = 56/102 (54.90%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 25  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGK 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+     +KA  IG ++G+
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEM----THKAMSIG-RQGR 86

Query: 85  LSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQARRAFE 127
           + VED ++L+RK    DPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  VQVEDIVFLIRK----DPRKFARVKDLLTMNEELKRARKAFD 118

[Close]

BLAST of Lsi02G024610 vs. ExPASy Swiss-Prot
Match: Q15543 (Transcription initiation factor TFIID subunit 13 OS=Homo sapiens OX=9606 GN=TAF13 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.4e-21
Identity = 56/102 (54.90%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 25  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGK 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+     +KA  IG ++G+
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEM----THKAMSIG-RQGR 86

Query: 85  LSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQARRAFE 127
           + VED ++L+RK    DPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  VQVEDIVFLIRK----DPRKFARVKDLLTMNEELKRARKAFD 118

[Close]

BLAST of Lsi02G024610 vs. ExPASy Swiss-Prot
Match: P61216 (Transcription initiation factor TFIID subunit 13 OS=Mus musculus OX=10090 GN=Taf13 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.4e-21
Identity = 56/102 (54.90%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 25  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGK 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+     +KA  IG ++G+
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEM----THKAMSIG-RQGR 86

Query: 85  LSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQARRAFE 127
           + VED ++L+RK    DPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  VQVEDIVFLIRK----DPRKFARVKDLLTMNEELKRARKAFD 118

[Close]

BLAST of Lsi02G024610 vs. ExPASy Swiss-Prot
Match: Q5R9W6 (Transcription initiation factor TFIID subunit 13 OS=Pongo abelii OX=9601 GN=TAF13 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.4e-21
Identity = 56/102 (54.90%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 25  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGK 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+     +KA  IG ++G+
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEM----THKAMSIG-RQGR 86

Query: 85  LSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQARRAFE 127
           + VED ++L+RK    DPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  VQVEDIVFLIRK----DPRKFARVKDLLTMNEELKRARKAFD 118

[Close]

BLAST of Lsi02G024610 vs. ExPASy TrEMBL
Match: A0A6J1CTQ0 (transcription initiation factor TFIID subunit 13 OS=Momordica charantia OX=3673 GN=LOC111014188 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.4e-61
Identity = 134/144 (93.06%), Postives = 135/144 (93.75%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNPSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQ 120
           VEYITEL    VYKAQEIGSKRGKLSVEDFLYLMRK    DPRKLNRSTELLSMNEELKQ
Sbjct: 61  VEYITEL----VYKAQEIGSKRGKLSVEDFLYLMRK----DPRKLNRSTELLSMNEELKQ 120

Query: 121 ARRAFEIDEDKLKKAFEEEDKMDQ 145
           ARRAFEIDEDKLKKAFEEEDK+DQ
Sbjct: 121 ARRAFEIDEDKLKKAFEEEDKLDQ 136

[Close]

BLAST of Lsi02G024610 vs. ExPASy TrEMBL
Match: A0A1S3BRL0 (transcription initiation factor TFIID subunit 13 OS=Cucumis melo OX=3656 GN=LOC103492769 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 134/143 (93.71%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQ 120
           VEYITEL    VYKAQEIGSKRGKLSVEDFLYLMRK    DPRKLNRSTELLSMNEELKQ
Sbjct: 61  VEYITEL----VYKAQEIGSKRGKLSVEDFLYLMRK----DPRKLNRSTELLSMNEELKQ 120

Query: 121 ARRAFEIDEDKLKKAFEEEDKMD 144
           ARRAFEIDEDKLKKAFEEEDKMD
Sbjct: 121 ARRAFEIDEDKLKKAFEEEDKMD 135

[Close]

BLAST of Lsi02G024610 vs. ExPASy TrEMBL
Match: A0A5A7TZC2 (Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold427G00490 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 134/143 (93.71%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQ 120
           VEYITEL    VYKAQEIGSKRGKLSVEDFLYLMRK    DPRKLNRSTELLSMNEELKQ
Sbjct: 61  VEYITEL----VYKAQEIGSKRGKLSVEDFLYLMRK----DPRKLNRSTELLSMNEELKQ 120

Query: 121 ARRAFEIDEDKLKKAFEEEDKMD 144
           ARRAFEIDEDKLKKAFEEEDKMD
Sbjct: 121 ARRAFEIDEDKLKKAFEEEDKMD 135

[Close]

BLAST of Lsi02G024610 vs. ExPASy TrEMBL
Match: A0A5D3D2Q2 (Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001560 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 134/143 (93.71%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 24  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 83

Query: 61  VEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQ 120
           VEYITEL    VYKAQEIGSKRGKLSVEDFLYLMRK    DPRKLNRSTELLSMNEELKQ
Sbjct: 84  VEYITEL----VYKAQEIGSKRGKLSVEDFLYLMRK----DPRKLNRSTELLSMNEELKQ 143

Query: 121 ARRAFEIDEDKLKKAFEEEDKMD 144
           ARRAFEIDEDKLKKAFEEEDKMD
Sbjct: 144 ARRAFEIDEDKLKKAFEEEDKMD 158

[Close]

BLAST of Lsi02G024610 vs. ExPASy TrEMBL
Match: A0A0A0KB69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407540 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.8e-60
Identity = 133/143 (93.01%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNN SAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQ 120
           VEYITEL    VYKAQEIGSKRGKLSVEDFLYLMRK    DPRKLNRSTELLSMNEELKQ
Sbjct: 61  VEYITEL----VYKAQEIGSKRGKLSVEDFLYLMRK----DPRKLNRSTELLSMNEELKQ 120

Query: 121 ARRAFEIDEDKLKKAFEEEDKMD 144
           ARRAFEIDEDKLKKAFEEEDKMD
Sbjct: 121 ARRAFEIDEDKLKKAFEEEDKMD 135

[Close]

BLAST of Lsi02G024610 vs. NCBI nr
Match: XP_038899215.1 (transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_038899216.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_038899217.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida])

HSP 1 Score: 245.4 bits (625), Expect = 3.1e-61
Identity = 135/144 (93.75%), Postives = 136/144 (94.44%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQ 120
           VEYITEL    VYKAQEIGSKRGKLSVEDFLYL+RK    DPRKLNRSTELLSMNEELKQ
Sbjct: 61  VEYITEL----VYKAQEIGSKRGKLSVEDFLYLIRK----DPRKLNRSTELLSMNEELKQ 120

Query: 121 ARRAFEIDEDKLKKAFEEEDKMDQ 145
           ARRAFEIDEDKLKKAFEEEDKMDQ
Sbjct: 121 ARRAFEIDEDKLKKAFEEEDKMDQ 136

[Close]

BLAST of Lsi02G024610 vs. NCBI nr
Match: XP_022144527.1 (transcription initiation factor TFIID subunit 13 [Momordica charantia] >XP_022144536.1 transcription initiation factor TFIID subunit 13 [Momordica charantia])

HSP 1 Score: 243.8 bits (621), Expect = 9.0e-61
Identity = 134/144 (93.06%), Postives = 135/144 (93.75%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNPSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQ 120
           VEYITEL    VYKAQEIGSKRGKLSVEDFLYLMRK    DPRKLNRSTELLSMNEELKQ
Sbjct: 61  VEYITEL----VYKAQEIGSKRGKLSVEDFLYLMRK----DPRKLNRSTELLSMNEELKQ 120

Query: 121 ARRAFEIDEDKLKKAFEEEDKMDQ 145
           ARRAFEIDEDKLKKAFEEEDK+DQ
Sbjct: 121 ARRAFEIDEDKLKKAFEEEDKLDQ 136

[Close]

BLAST of Lsi02G024610 vs. NCBI nr
Match: XP_008451497.1 (PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451498.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451499.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451500.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451501.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451502.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451503.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_016901114.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_016901115.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_016901116.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >KAA0046681.1 transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa])

HSP 1 Score: 242.3 bits (617), Expect = 2.6e-60
Identity = 134/143 (93.71%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQ 120
           VEYITEL    VYKAQEIGSKRGKLSVEDFLYLMRK    DPRKLNRSTELLSMNEELKQ
Sbjct: 61  VEYITEL----VYKAQEIGSKRGKLSVEDFLYLMRK----DPRKLNRSTELLSMNEELKQ 120

Query: 121 ARRAFEIDEDKLKKAFEEEDKMD 144
           ARRAFEIDEDKLKKAFEEEDKMD
Sbjct: 121 ARRAFEIDEDKLKKAFEEEDKMD 135

[Close]

BLAST of Lsi02G024610 vs. NCBI nr
Match: TYK18217.1 (transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa])

HSP 1 Score: 242.3 bits (617), Expect = 2.6e-60
Identity = 134/143 (93.71%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 24  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 83

Query: 61  VEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQ 120
           VEYITEL    VYKAQEIGSKRGKLSVEDFLYLMRK    DPRKLNRSTELLSMNEELKQ
Sbjct: 84  VEYITEL----VYKAQEIGSKRGKLSVEDFLYLMRK----DPRKLNRSTELLSMNEELKQ 143

Query: 121 ARRAFEIDEDKLKKAFEEEDKMD 144
           ARRAFEIDEDKLKKAFEEEDKMD
Sbjct: 144 ARRAFEIDEDKLKKAFEEEDKMD 158

[Close]

BLAST of Lsi02G024610 vs. NCBI nr
Match: XP_004136002.1 (transcription initiation factor TFIID subunit 13 [Cucumis sativus] >KGN45001.1 hypothetical protein Csa_016903 [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 9.9e-60
Identity = 133/143 (93.01%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNN SAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQ 120
           VEYITEL    VYKAQEIGSKRGKLSVEDFLYLMRK    DPRKLNRSTELLSMNEELKQ
Sbjct: 61  VEYITEL----VYKAQEIGSKRGKLSVEDFLYLMRK----DPRKLNRSTELLSMNEELKQ 120

Query: 121 ARRAFEIDEDKLKKAFEEEDKMD 144
           ARRAFEIDEDKLKKAFEEEDKMD
Sbjct: 121 ARRAFEIDEDKLKKAFEEEDKMD 135

[Close]

BLAST of Lsi02G024610 vs. TAIR 10
Match: AT1G02680.1 (TBP-associated factor 13 )

HSP 1 Score: 143.3 bits (360), Expect = 1.5e-34
Identity = 82/134 (61.19%), Postives = 104/134 (77.61%), Query Frame = 0


Query: 2   NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMED 61
           N P+A +SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+ED
Sbjct: 3   NTPAAAASSSSKSKAAGTSQPQE----KRKTLFQKELQHMMYGFGDEQNPLPESVALVED 62

Query: 62  IVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEEL 121
           IVVEY+T+L     +KAQEIGSKRG+L V+DFLYL+RK    D  KLNR  ELL+M EEL
Sbjct: 63  IVVEYVTDL----THKAQEIGSKRGRLLVDDFLYLIRK----DLPKLNRCRELLAMQEEL 122

Query: 122 KQARRAFEIDEDKL 133
           KQAR+AF++DE +L
Sbjct: 123 KQARKAFDVDEKEL 124

The following BLAST results are available for this feature:

BLAST of Lsi02G024610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQH4	2.2e-33	61.19	Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana OX=3702...	[more]
Q148M7	9.4e-21	54.90	Transcription initiation factor TFIID subunit 13 OS=Bos taurus OX=9913 GN=TAF13 ...	[more]
Q15543	9.4e-21	54.90	Transcription initiation factor TFIID subunit 13 OS=Homo sapiens OX=9606 GN=TAF1...	[more]
P61216	9.4e-21	54.90	Transcription initiation factor TFIID subunit 13 OS=Mus musculus OX=10090 GN=Taf...	[more]
Q5R9W6	9.4e-21	54.90	Transcription initiation factor TFIID subunit 13 OS=Pongo abelii OX=9601 GN=TAF1...	[more]

BLAST of Lsi02G024610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTQ0	4.4e-61	93.06	transcription initiation factor TFIID subunit 13 OS=Momordica charantia OX=3673 ...	[more]
A0A1S3BRL0	1.3e-60	93.71	transcription initiation factor TFIID subunit 13 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7TZC2	1.3e-60	93.71	Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5D3D2Q2	1.3e-60	93.71	Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0KB69	4.8e-60	93.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407540 PE=4 SV=1	[more]

BLAST of Lsi02G024610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899215.1	3.1e-61	93.75	transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_03...	[more]
XP_022144527.1	9.0e-61	93.06	transcription initiation factor TFIID subunit 13 [Momordica charantia] >XP_02214...	[more]
XP_008451497.1	2.6e-60	93.71	PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_0...	[more]
TYK18217.1	2.6e-60	93.71	transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa]	[more]
XP_004136002.1	9.9e-60	93.01	transcription initiation factor TFIID subunit 13 [Cucumis sativus] >KGN45001.1 h...	[more]

BLAST of Lsi02G024610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02680.1	1.5e-34	61.19	TBP-associated factor 13	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 111..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
IPR003195	Transcription initiation factor IID, subunit 13	PFAM	PF02269	TFIID-18kDa	coord: 30..126 e-value: 4.5E-26 score: 90.7
IPR003195	Transcription initiation factor IID, subunit 13	PANTHER	PTHR11380	TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED	coord: 1..141
IPR003195	Transcription initiation factor IID, subunit 13	CDD	cd07978	TAF13	coord: 28..126 e-value: 7.13488E-38 score: 122.254
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 30..72 e-value: 2.8E-20 score: 73.7
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 31..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G024610.1	Lsi02G024610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009960	endosperm development
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003743	translation initiation factor activity